Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:15:47 (6716): wrapper (7.7.26015): starting
09:15:47 (6716): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 09:15:47] Arguments: --nthreads 12
[2025-12-14 09:15:47] Threads: 12
[2025-12-14 09:15:47] Checking for CVMFS
[2025-12-14 09:15:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 09:15:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 09:15:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 09:15:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 09:15:47] 2.11.2.0 22587 28251 90216 153998 2 56 17793834 20275201 1 130560 0 9553444 99.893 1837843 41228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 09:15:47] CVMFS is ok
[2025-12-14 09:15:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 09:15:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 09:15:47] Further information can be found at the LHC@home message board.
[2025-12-14 09:15:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 09:15:47] Checking for apptainer binary...
[2025-12-14 09:15:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 09:15:47] Running /usr/bin/apptainer --version
[2025-12-14 09:15:47] apptainer version 1.3.2-1.el7
[2025-12-14 09:15:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 09:15:49] c-205-13.aglt2.org
[2025-12-14 09:15:49] apptainer works
[2025-12-14 09:15:49] Set ATHENA_PROC_NUMBER=12
[2025-12-14 09:15:49] Set ATHENA_CORE_NUMBER=12
[2025-12-14 09:15:49] Starting ATLAS job with PandaID=6929438496
[2025-12-14 09:15:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 10:57:19]  *** The last 200 lines of the pilot log: ***
[2025-12-14 10:57:19] 2025-12-14 15:56:25,844 | INFO     | summary of transferred files:
[2025-12-14 10:57:19] 2025-12-14 15:56:25,844 | INFO     |  -- lfn=log.47898763._010156.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 10:57:19] 2025-12-14 15:56:25,844 | INFO     | stage-out finished correctly
[2025-12-14 10:57:19] 2025-12-14 15:56:26,303 | INFO     | PID=10411 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 10:57:19] 2025-12-14 15:56:26,932 | WARNING  | process 16819 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 10:57:19] 2025-12-14 15:56:26,933 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929438496/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,933 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929438496/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,934 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-14 10:57:19] 2025-12-14 15:56:26,934 | WARNING  | maxPSS not found in memory monitor output
[2025-12-14 10:57:19] 2025-12-14 15:56:26,934 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3878180 B
[2025-12-14 10:57:19] 2025-12-14 15:56:26,935 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16086 B
[2025-12-14 10:57:19] 2025-12-14 15:56:26,935 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 10:57:19] 2025-12-14 15:56:26,951 | INFO     | sufficient remaining disk space (29317136384 B)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,952 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,953 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929438496: 4186957 B (within 2768240640 B limit)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,953 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929438496/HITS.47898763._010156.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,953 | INFO     | total size of present files: 0 B (workdir size: 4186957 B)
[2025-12-14 10:57:19] 2025-12-14 15:56:26,954 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929438496/HITS.47898763._010156.pool.root.1 since it does not exist
[2025-12-14 10:57:19] 2025-12-14 15:56:27,043 | INFO     | number of running child processes to parent process 16819: 1
[2025-12-14 10:57:19] 2025-12-14 15:56:27,043 | INFO     | maximum number of monitored processes: 6
[2025-12-14 10:57:19] 2025-12-14 15:56:27,303 | INFO     | time since job start (6023s) is within the limit (174528.0s)
[2025-12-14 10:57:19] 2025-12-14 15:56:27,533 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 10:57:19] 2025-12-14 15:56:27,614 | INFO     | job 6929438496 has state=finished
[2025-12-14 10:57:19] 2025-12-14 15:56:27,614 | INFO     | preparing for final server update for job 6929438496 in state='finished'
[2025-12-14 10:57:19] 2025-12-14 15:56:27,614 | INFO     | this job has now completed (state=finished)
[2025-12-14 10:57:19] 2025-12-14 15:56:27,614 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 10:57:19] 2025-12-14 15:56:27,614 | INFO     | log transfer has been attempted: DONE
[2025-12-14 10:57:19] 2025-12-14 15:56:27,615 | INFO     | job 6929438496 has finished - writing final server update
[2025-12-14 10:57:19] 2025-12-14 15:56:27,615 | INFO     | total number of processed events: 400 (read)
[2025-12-14 10:57:19] 2025-12-14 15:56:27,616 | INFO     | executing command: lscpu
[2025-12-14 10:57:19] 2025-12-14 15:56:27,640 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 10:57:19] 2025-12-14 15:56:29,309 | INFO     | time since job start (6025s) is within the limit (174528.0s)
[2025-12-14 10:57:19] 2025-12-14 15:56:29,546 | INFO     | monitor loop #446: job 0:6929438496 is in state 'finished'
[2025-12-14 10:57:19] 2025-12-14 15:56:29,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 10:57:19] 2025-12-14 15:56:31,314 | INFO     | time since job start (6027s) is within the limit (174528.0s)
[2025-12-14 10:57:19] 2025-12-14 15:56:32,050 | INFO     | monitor loop #447: job 0:6929438496 is in state 'finished'
[2025-12-14 10:57:19] 2025-12-14 15:56:32,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 10:57:19] 2025-12-14 15:56:33,319 | INFO     | time since job start (6029s) is within the limit (174528.0s)
[2025-12-14 10:57:19] 2025-12-14 15:56:33,621 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 10:57:19] 2025-12-14 15:56:33,625 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-14 10:57:19] 2025-12-14 15:56:33,627 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929438496/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 10:57:19] 2025-12-14 15:56:33,628 | INFO     | extracted standard info from prmon json
[2025-12-14 10:57:19] 2025-12-14 15:56:33,628 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 10:57:19] 2025-12-14 15:56:33,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 10:57:19] 2025-12-14 15:56:33,629 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 10:57:19] 2025-12-14 15:56:33,629 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 10:57:19] 2025-12-14 15:56:33,631 | INFO     | fitting pss+swap vs Time
[2025-12-14 10:57:19] 2025-12-14 15:56:33,631 | INFO     | sum of square deviations: 241429643.0
[2025-12-14 10:57:19] 2025-12-14 15:56:33,632 | INFO     | sum of deviations: -15341084041.000002
[2025-12-14 10:57:19] 2025-12-14 15:56:33,632 | INFO     | mean x: 1765724873.5
[2025-12-14 10:57:19] 2025-12-14 15:56:33,632 | INFO     | mean y: 2809272.804347826
[2025-12-14 10:57:19] 2025-12-14 15:56:33,632 | INFO     | intersect: 112201681544.87079
[2025-12-14 10:57:19] 2025-12-14 15:56:33,632 | INFO     | chi2: 0.11087423852118505
[2025-12-14 10:57:19] 2025-12-14 15:56:33,632 | INFO     | current memory leak: -63.54 B/s (using 92 data points, chi2=0.11)
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | could have reported an average CPU frequency of 2145 MHz (7 samples)
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | ..............................
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | . Timing measurements:
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | . get job = 0 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | . initial setup = 2 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | . payload setup = 7 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | . stage-in = 0 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,633 | INFO     | . payload execution = 5994 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,634 | INFO     | . stage-out = 0 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,634 | INFO     | . log creation = 0 s
[2025-12-14 10:57:19] 2025-12-14 15:56:33,634 | INFO     | ..............................
[2025-12-14 10:57:19] 2025-12-14 15:56:34,136 | INFO     | 
[2025-12-14 10:57:19] 2025-12-14 15:56:34,136 | INFO     | job summary report
[2025-12-14 10:57:19] 2025-12-14 15:56:34,136 | INFO     | --------------------------------------------------
[2025-12-14 10:57:19] 2025-12-14 15:56:34,136 | INFO     | PanDA job id: 6929438496
[2025-12-14 10:57:19] 2025-12-14 15:56:34,136 | INFO     | task id: 47898763
[2025-12-14 10:57:19] 2025-12-14 15:56:34,136 | INFO     | errors: (none)
[2025-12-14 10:57:19] 2025-12-14 15:56:34,137 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 10:57:19] 2025-12-14 15:56:34,137 | INFO     | pilot state: finished 
[2025-12-14 10:57:19] 2025-12-14 15:56:34,137 | INFO     | transexitcode: 0
[2025-12-14 10:57:19] 2025-12-14 15:56:34,137 | INFO     | exeerrorcode: 0
[2025-12-14 10:57:19] 2025-12-14 15:56:34,137 | INFO     | exeerrordiag: 
[2025-12-14 10:57:19] 2025-12-14 15:56:34,137 | INFO     | exitcode: 0
[2025-12-14 10:57:19] 2025-12-14 15:56:34,138 | INFO     | exitmsg: OK
[2025-12-14 10:57:19] 2025-12-14 15:56:34,138 | INFO     | cpuconsumptiontime: 65910 s
[2025-12-14 10:57:19] 2025-12-14 15:56:34,138 | INFO     | nevents: 400
[2025-12-14 10:57:19] 2025-12-14 15:56:34,138 | INFO     | neventsw: 0
[2025-12-14 10:57:19] 2025-12-14 15:56:34,138 | INFO     | pid: 16819
[2025-12-14 10:57:19] 2025-12-14 15:56:34,138 | INFO     | pgrp: 16819
[2025-12-14 10:57:19] 2025-12-14 15:56:34,139 | INFO     | corecount: 12
[2025-12-14 10:57:19] 2025-12-14 15:56:34,139 | INFO     | event service: False
[2025-12-14 10:57:19] 2025-12-14 15:56:34,139 | INFO     | sizes: {0: 2283128, 1: 2283984, 6: 2284246, 12: 2284274, 6005: 2310997, 6006: 2319995, 6008: 2320207, 6014: 2320401}
[2025-12-14 10:57:19] 2025-12-14 15:56:34,139 | INFO     | --------------------------------------------------
[2025-12-14 10:57:19] 2025-12-14 15:56:34,139 | INFO     | 
[2025-12-14 10:57:19] 2025-12-14 15:56:34,139 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 10:57:19] 2025-12-14 15:56:34,164 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,164 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,164 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,165 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,165 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,165 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,165 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,165 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,165 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,166 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,166 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,166 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,166 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,166 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,167 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,167 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,167 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 10:57:19] 2025-12-14 15:56:34,167 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,167 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 10:57:19] 2025-12-14 15:56:34,168 | INFO     | job 6929438496 has completed (purged errors)
[2025-12-14 10:57:19] 2025-12-14 15:56:34,168 | INFO     | overall cleanup function is called
[2025-12-14 10:57:19] 2025-12-14 15:56:35,173 | INFO     | --- collectZombieJob: --- 10, [16819]
[2025-12-14 10:57:19] 2025-12-14 15:56:35,173 | INFO     | zombie collector waiting for pid 16819
[2025-12-14 10:57:19] 2025-12-14 15:56:35,173 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 10:57:19] 2025-12-14 15:56:35,173 | INFO     | collected zombie processes
[2025-12-14 10:57:19] 2025-12-14 15:56:35,173 | INFO     | will attempt to kill all subprocesses of pid=16819
[2025-12-14 10:57:19] 2025-12-14 15:56:35,267 | INFO     | process IDs to be killed: [16819] (in reverse order)
[2025-12-14 10:57:19] 2025-12-14 15:56:35,364 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 10:57:19] 2025-12-14 15:56:35,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 10:57:19] 2025-12-14 15:56:35,368 | INFO     | did not find any defunct processes belonging to 16819
[2025-12-14 10:57:19] 2025-12-14 15:56:35,371 | INFO     | did not find any defunct processes belonging to 16819
[2025-12-14 10:57:19] 2025-12-14 15:56:35,371 | INFO     | ready for new job
[2025-12-14 10:57:19] 2025-12-14 15:56:35,371 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 10:57:19] 2025-12-14 15:56:35,373 | INFO     | ***************************************
[2025-12-14 10:57:19] 2025-12-14 15:56:35,373 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 10:57:19] 2025-12-14 15:56:35,373 | INFO     | ***************************************
[2025-12-14 10:57:19] 2025-12-14 15:56:35,373 | INFO     | 
[2025-12-14 10:57:19] 2025-12-14 15:56:35,374 | INFO     | architecture information:
[2025-12-14 10:57:19] 2025-12-14 15:56:35,374 | INFO     | executing command: cat /etc/os-release
[2025-12-14 10:57:19] 2025-12-14 15:56:35,390 | INFO     | cat /etc/os-release:
[2025-12-14 10:57:19] NAME="CentOS Linux"
[2025-12-14 10:57:19] VERSION="7 (Core)"
[2025-12-14 10:57:19] ID="centos"
[2025-12-14 10:57:19] ID_LIKE="rhel fedora"
[2025-12-14 10:57:19] VERSION_ID="7"
[2025-12-14 10:57:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 10:57:19] ANSI_COLOR="0;31"
[2025-12-14 10:57:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 10:57:19] HOME_URL="https://www.centos.org/"
[2025-12-14 10:57:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 10:57:19] 
[2025-12-14 10:57:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 10:57:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 10:57:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 10:57:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 10:57:19] 
[2025-12-14 10:57:19] 2025-12-14 15:56:35,390 | INFO     | ***************************************
[2025-12-14 10:57:19] 2025-12-14 15:56:35,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 10:57:19] 2025-12-14 15:56:35,911 | INFO     | sufficient remaining disk space (29322379264 B)
[2025-12-14 10:57:19] 2025-12-14 15:56:35,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 10:57:19] 2025-12-14 15:56:35,912 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 10:57:19] 2025-12-14 15:56:35,912 | INFO     | update_server=False
[2025-12-14 10:57:19] 2025-12-14 15:56:35,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 10:57:19] 2025-12-14 15:56:35,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 10:57:19] 2025-12-14 15:56:35,913 | INFO     | aborting loop
[2025-12-14 10:57:19] 2025-12-14 15:56:36,404 | INFO     | all job control threads have been joined
[2025-12-14 10:57:19] 2025-12-14 15:56:36,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 10:57:19] 2025-12-14 15:56:36,829 | INFO     | all data control threads have been joined
[2025-12-14 10:57:19] 2025-12-14 15:56:36,917 | INFO     | [job] retrieve thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:36,918 | INFO     | [job] job monitor thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,011 | INFO     | all payload control threads have been joined
[2025-12-14 10:57:19] 2025-12-14 15:56:37,254 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,263 | INFO     | [payload] validate_post thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,342 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,406 | INFO     | [payload] failed_post thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,409 | INFO     | [job] control thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,639 | INFO     | [data] copytool_in thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,834 | INFO     | [data] control thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:37,986 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:38,016 | INFO     | [payload] control thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:38,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 10:57:19] 2025-12-14 15:56:38,144 | INFO     | [job] validate thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:38,447 | INFO     | [data] copytool_out thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:38,723 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 10:57:19] 2025-12-14 15:56:39,728 | INFO     | [job] queue monitor thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:42,128 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:56:46,243 | INFO     | job.realtimelogging is not enabled
[2025-12-14 10:57:19] 2025-12-14 15:56:47,249 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 10:57:19] 2025-12-14 15:57:06,525 | INFO     | PID=10411 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 10:57:19] 2025-12-14 15:57:06,525 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 10:57:19] 2025-12-14 15:57:06,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 10:57:19] 2025-12-14 15:57:06,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 10:57:19] 2025-12-14 15:57:13,219 | INFO     | [monitor] cgroup control has ended
[2025-12-14 10:57:19] 2025-12-14 15:57:14,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139926481155904)>', '<ExcThread(monitor, started 139926041507584)>']
[2025-12-14 10:57:19] 2025-12-14 15:57:14,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 10:57:19] 2025-12-14 15:57:14,558 | INFO     | [monitor] control thread has ended
[2025-12-14 10:57:19] 2025-12-14 15:57:19,326 | INFO     | all workflow threads have been joined
[2025-12-14 10:57:19] 2025-12-14 15:57:19,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 10:57:19] 2025-12-14 15:57:19,326 | INFO     | traces error code: 0
[2025-12-14 10:57:19] 2025-12-14 15:57:19,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 10:57:19] 2025-12-14 15:57:19,409 [wrapper] ==== pilot stdout END ====
[2025-12-14 10:57:19] 2025-12-14 15:57:19,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 10:57:19] 2025-12-14 15:57:19,416 [wrapper] pilotpid: 10411
[2025-12-14 10:57:19] 2025-12-14 15:57:19,420 [wrapper] Pilot exit status: 0
[2025-12-14 10:57:19] 2025-12-14 15:57:19,435 [wrapper] pandaids: 6929438496
[2025-12-14 10:57:19] 2025-12-14 15:57:19,481 [wrapper] cleanup supervisor_pilot 15916 10412
[2025-12-14 10:57:19] 2025-12-14 15:57:19,485 [wrapper] Test setup, not cleaning
[2025-12-14 10:57:19] 2025-12-14 15:57:19,489 [wrapper] apfmon messages muted
[2025-12-14 10:57:19] 2025-12-14 15:57:19,493 [wrapper] ==== wrapper stdout END ====
[2025-12-14 10:57:19] 2025-12-14 15:57:19,496 [wrapper] ==== wrapper stderr END ====
[2025-12-14 10:57:19]  *** Error codes and diagnostics ***
[2025-12-14 10:57:19]     "exeErrorCode": 0,
[2025-12-14 10:57:19]     "exeErrorDiag": "",
[2025-12-14 10:57:19]     "pilotErrorCode": 0,
[2025-12-14 10:57:19]     "pilotErrorDiag": "",
[2025-12-14 10:57:19]  *** Listing of results directory ***
[2025-12-14 10:57:19] total 437272
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 03:33 pilot3.tar.gz
[2025-12-14 10:57:19] -rwx------ 1 boincer umatlas     36322 Dec 14 03:34 runpilot2-wrapper.sh
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 03:35 queuedata.json
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas       100 Dec 14 09:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 10:57:19] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 09:15 run_atlas
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas       105 Dec 14 09:15 job.xml
[2025-12-14 10:57:19] -rw-r--r-- 2 boincer umatlas 220978802 Dec 14 09:15 EVNT.47898761._000432.pool.root.1
[2025-12-14 10:57:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 09:15 start_atlas.sh
[2025-12-14 10:57:19] drwxrwx--x 2 boincer umatlas      4096 Dec 14 09:15 shared
[2025-12-14 10:57:19] -rw-r--r-- 2 boincer umatlas    592397 Dec 14 09:15 input.tar.gz
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas         0 Dec 14 09:15 boinc_lockfile
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas      2506 Dec 14 09:15 pandaJob.out
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas        57 Dec 14 09:15 setup.sh.local
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas    991024 Dec 14 09:16 agis_schedconf.cvmfs.json
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas   1516240 Dec 14 09:16 agis_ddmendpoints.agis.ALL.json
[2025-12-14 10:57:19] drwx------ 5 boincer umatlas      4096 Dec 14 09:16 pilot3
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas      5953 Dec 14 10:47 init_data.xml
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas 220374753 Dec 14 10:55 HITS.47898763._010156.pool.root.1
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas       529 Dec 14 10:56 boinc_task_state.xml
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas      1046 Dec 14 10:56 memory_monitor_summary.json
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas        95 Dec 14 10:56 pilot_heartbeat.json
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas    393849 Dec 14 10:56 log.47898763._010156.job.log.tgz.1
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas      7864 Dec 14 10:56 heartbeat.json
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 10:57 boinc_mmap_file
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas        27 Dec 14 10:57 wrapper_checkpoint.txt
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas      4818 Dec 14 10:57 pilotlog.txt
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas    858148 Dec 14 10:57 log.47898763._010156.job.log.1
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas       357 Dec 14 10:57 output.list
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas       620 Dec 14 10:57 runtime_log
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas   1269760 Dec 14 10:57 result.tar.gz
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas       659 Dec 14 10:57 yAmMDmdjwo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHEVKDmRImC5n.diag
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 10:57 runtime_log.err
[2025-12-14 10:57:19] -rw-r--r-- 1 boincer umatlas     22538 Dec 14 10:57 stderr.txt
[2025-12-14 10:57:19] HITS file was successfully produced:
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas 220374753 Dec 14 10:55 shared/HITS.pool.root.1
[2025-12-14 10:57:19]  *** Contents of shared directory: ***
[2025-12-14 10:57:19] total 432848
[2025-12-14 10:57:19] -rw-r--r-- 2 boincer umatlas 220978802 Dec 14 09:15 ATLAS.root_0
[2025-12-14 10:57:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 09:15 start_atlas.sh
[2025-12-14 10:57:19] -rw-r--r-- 2 boincer umatlas    592397 Dec 14 09:15 input.tar.gz
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas 220374753 Dec 14 10:55 HITS.pool.root.1
[2025-12-14 10:57:19] -rw------- 1 boincer umatlas   1269760 Dec 14 10:57 result.tar.gz
10:57:21 (6716): run_atlas exited; CPU time 65900.209586
10:57:21 (6716): called boinc_finish(0)

</stderr_txt>
]]>

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