Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:23 (1746212): wrapper (7.7.26015): starting
01:27:23 (1746212): wrapper: running run_atlas (--nthreads 2)
[2025-12-15 01:27:23] Arguments: --nthreads 2
[2025-12-15 01:27:23] Threads: 2
[2025-12-15 01:27:23] Checking for CVMFS
[2025-12-15 01:27:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-15 01:27:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-15 01:27:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-15 01:27:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-15 01:27:24] 2.9.2.0 1260249 2476 58732 154013 1 57 21411915 36864001 0 130560 0 1280609 99.987 87390 7757 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-15 01:27:24] CVMFS is ok
[2025-12-15 01:27:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-15 01:27:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-15 01:27:24] Further information can be found at the LHC@home message board.
[2025-12-15 01:27:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-15 01:27:24] Checking for apptainer binary...
[2025-12-15 01:27:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-15 01:27:24] Running /usr/bin/apptainer --version
[2025-12-15 01:27:24] apptainer version 1.4.1-1.1
[2025-12-15 01:27:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-15 01:27:24] thA334a
[2025-12-15 01:27:24] apptainer works
[2025-12-15 01:27:24] Set ATHENA_PROC_NUMBER=2
[2025-12-15 01:27:24] Set ATHENA_CORE_NUMBER=2
[2025-12-15 01:27:24] Starting ATLAS job with PandaID=6929335968
[2025-12-15 01:27:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 04:20:59]  *** The last 200 lines of the pilot log: ***
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 04:20:59] 2025-12-15 03:20:28,289 | INFO     | job 6929335968 has completed (purged errors)
[2025-12-15 04:20:59] 2025-12-15 03:20:28,290 | INFO     | overall cleanup function is called
[2025-12-15 04:20:59] 2025-12-15 03:20:29,295 | INFO     | --- collectZombieJob: --- 10, [1756343]
[2025-12-15 04:20:59] 2025-12-15 03:20:29,296 | INFO     | zombie collector waiting for pid 1756343
[2025-12-15 04:20:59] 2025-12-15 03:20:29,296 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 04:20:59] 2025-12-15 03:20:29,296 | INFO     | collected zombie processes
[2025-12-15 04:20:59] 2025-12-15 03:20:29,297 | INFO     | will attempt to kill all subprocesses of pid=1756343
[2025-12-15 04:20:59] 2025-12-15 03:20:29,330 | INFO     | process IDs to be killed: [1756343] (in reverse order)
[2025-12-15 04:20:59] 2025-12-15 03:20:29,350 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 04:20:59] 2025-12-15 03:20:29,350 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 04:20:59] 2025-12-15 03:20:29,351 | INFO     | did not find any defunct processes belonging to 1756343
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | did not find any defunct processes belonging to 1756343
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | ready for new job
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | ***************************************
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | ***************************************
[2025-12-15 04:20:59] 2025-12-15 03:20:29,352 | INFO     | 
[2025-12-15 04:20:59] 2025-12-15 03:20:29,353 | INFO     | architecture information:
[2025-12-15 04:20:59] 2025-12-15 03:20:29,353 | INFO     | executing command: cat /etc/os-release
[2025-12-15 04:20:59] 2025-12-15 03:20:29,361 | INFO     | cat /etc/os-release:
[2025-12-15 04:20:59] NAME="CentOS Linux"
[2025-12-15 04:20:59] VERSION="7 (Core)"
[2025-12-15 04:20:59] ID="centos"
[2025-12-15 04:20:59] ID_LIKE="rhel fedora"
[2025-12-15 04:20:59] VERSION_ID="7"
[2025-12-15 04:20:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 04:20:59] ANSI_COLOR="0;31"
[2025-12-15 04:20:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 04:20:59] HOME_URL="https://www.centos.org/"
[2025-12-15 04:20:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 04:20:59] 
[2025-12-15 04:20:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 04:20:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 04:20:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 04:20:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 04:20:59] 
[2025-12-15 04:20:59] 2025-12-15 03:20:29,361 | INFO     | ***************************************
[2025-12-15 04:20:59] 2025-12-15 03:20:29,865 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | INFO     | sufficient remaining disk space (503006101504 B)
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | INFO     | update_server=False
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 04:20:59] 2025-12-15 03:20:29,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 04:20:59] 2025-12-15 03:20:30,001 | INFO     | all data control threads have been joined
[2025-12-15 04:20:59] 2025-12-15 03:20:30,298 | INFO     | all payload control threads have been joined
[2025-12-15 04:20:59] 2025-12-15 03:20:30,307 | INFO     | all job control threads have been joined
[2025-12-15 04:20:59] 2025-12-15 03:20:30,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 04:20:59] 2025-12-15 03:20:30,756 | INFO     | aborting loop
[2025-12-15 04:20:59] 2025-12-15 03:20:30,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 04:20:59] 2025-12-15 03:20:30,883 | INFO     | [job] queue monitor thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:30,884 | INFO     | [job] retrieve thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,006 | INFO     | [data] control thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,124 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,304 | INFO     | [payload] control thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,313 | INFO     | [job] control thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,365 | INFO     | [job] validate thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,464 | INFO     | [payload] failed_post thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,762 | INFO     | [job] job monitor thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,884 | INFO     | [data] copytool_out thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,903 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,922 | INFO     | [data] copytool_in thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:31,993 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:32,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:32,160 | INFO     | [payload] validate_post thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:34,809 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 04:20:59] 2025-12-15 03:20:52,242 | INFO     | [monitor] cgroup control has ended
[2025-12-15 04:20:59] 2025-12-15 03:20:53,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140362993411904)>', '<ExcThread(monitor, started 140362643384064)>']
[2025-12-15 04:20:59] 2025-12-15 03:20:58,030 | INFO     | all workflow threads have been joined
[2025-12-15 04:20:59] 2025-12-15 03:20:58,030 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 04:20:59] 2025-12-15 03:20:58,030 | INFO     | traces error code: 0
[2025-12-15 04:20:59] 2025-12-15 03:20:58,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 04:20:59] 2025-12-15 03:20:58,636 | INFO     | 10372s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-15 04:20:59] 2025-12-15 03:20:59,687 | INFO     | PID=1749922 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-15 04:20:59] 2025-12-15 03:20:59,687 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 04:20:59] 2025-12-15 03:20:59,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 04:20:59] 2025-12-15 03:20:59,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 04:20:59] 2025-12-15 03:20:59,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 04:20:59] 2025-12-15 03:20:59,687 | INFO     | [monitor] control thread has ended
[2025-12-15 04:20:59] 2025-12-15 03:20:59,725 [wrapper] ==== pilot stdout END ====
[2025-12-15 04:20:59] 2025-12-15 03:20:59,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 04:20:59] 2025-12-15 03:20:59,730 [wrapper] pilotpid: 1749922
[2025-12-15 04:20:59] 2025-12-15 03:20:59,733 [wrapper] Pilot exit status: 0
[2025-12-15 04:20:59] 2025-12-15 03:20:59,738 [wrapper] pandaids: 6929335968
[2025-12-15 04:20:59] 2025-12-15 03:20:59,750 [wrapper] cleanup supervisor_pilot 1775138 1749923
[2025-12-15 04:20:59] 2025-12-15 03:20:59,752 [wrapper] Test setup, not cleaning
[2025-12-15 04:20:59] 2025-12-15 03:20:59,754 [wrapper] apfmon messages muted
[2025-12-15 04:20:59] 2025-12-15 03:20:59,756 [wrapper] ==== wrapper stdout END ====
[2025-12-15 04:20:59] 2025-12-15 03:20:59,758 [wrapper] ==== wrapper stderr END ====
[2025-12-15 04:20:59]  *** Error codes and diagnostics ***
[2025-12-15 04:20:59]     "exeErrorCode": 0,
[2025-12-15 04:20:59]     "exeErrorDiag": "",
[2025-12-15 04:20:59]     "pilotErrorCode": 0,
[2025-12-15 04:20:59]     "pilotErrorDiag": "",
[2025-12-15 04:20:59]  *** Listing of results directory ***
[2025-12-15 04:20:59] total 442956
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc    579449 Dec 13 18:18 pilot3.tar.gz
[2025-12-15 04:20:59] -rwx------ 1 boinc boinc     36322 Dec 13 18:20 runpilot2-wrapper.sh
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc      5112 Dec 13 18:21 queuedata.json
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc       100 Dec 15 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 04:20:59] -rwxr-xr-x 1 boinc boinc      7986 Dec 15 01:27 run_atlas
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc       105 Dec 15 01:27 job.xml
[2025-12-15 04:20:59] -rw-r--r-- 2 boinc boinc 224361048 Dec 15 01:27 EVNT.47898761._000297.pool.root.1
[2025-12-15 04:20:59] -rw-r--r-- 2 boinc boinc    592401 Dec 15 01:27 input.tar.gz
[2025-12-15 04:20:59] -rw-r--r-- 2 boinc boinc     15847 Dec 15 01:27 start_atlas.sh
[2025-12-15 04:20:59] drwxrwx--x 2 boinc boinc      4096 Dec 15 01:27 shared
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc         0 Dec 15 01:27 boinc_setup_complete
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc      6207 Dec 15 01:27 init_data.xml
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc         0 Dec 15 01:27 boinc_lockfile
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc      2504 Dec 15 01:27 pandaJob.out
[2025-12-15 04:20:59] -rw------- 1 boinc boinc    991024 Dec 15 01:27 agis_schedconf.cvmfs.json
[2025-12-15 04:20:59] -rw------- 1 boinc boinc   1516240 Dec 15 01:27 agis_ddmendpoints.agis.ALL.json
[2025-12-15 04:20:59] drwx------ 5 boinc boinc      4096 Dec 15 01:27 pilot3
[2025-12-15 04:20:59] -rw------- 1 boinc boinc 221778504 Dec 15 04:19 HITS.47898763._006154.pool.root.1
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc       530 Dec 15 04:20 boinc_task_state.xml
[2025-12-15 04:20:59] -rw------- 1 boinc boinc      1016 Dec 15 04:20 memory_monitor_summary.json
[2025-12-15 04:20:59] -rw------- 1 boinc boinc    301751 Dec 15 04:20 log.47898763._006154.job.log.tgz.1
[2025-12-15 04:20:59] -rw------- 1 boinc boinc        95 Dec 15 04:20 pilot_heartbeat.json
[2025-12-15 04:20:59] -rw------- 1 boinc boinc      7757 Dec 15 04:20 heartbeat.json
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc      8192 Dec 15 04:20 boinc_mmap_file
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc        28 Dec 15 04:20 wrapper_checkpoint.txt
[2025-12-15 04:20:59] -rw------- 1 boinc boinc       863 Dec 15 04:20 pilotlog.txt
[2025-12-15 04:20:59] -rw------- 1 boinc boinc   1473864 Dec 15 04:20 log.47898763._006154.job.log.1
[2025-12-15 04:20:59] -rw------- 1 boinc boinc       357 Dec 15 04:20 output.list
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc       620 Dec 15 04:20 runtime_log
[2025-12-15 04:20:59] -rw------- 1 boinc boinc   1792000 Dec 15 04:20 result.tar.gz
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc      8903 Dec 15 04:20 runtime_log.err
[2025-12-15 04:20:59] -rw------- 1 boinc boinc       663 Dec 15 04:20 TwJODmcTio8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmL2TKDmTfB7Um.diag
[2025-12-15 04:20:59] -rw-r--r-- 1 boinc boinc     11659 Dec 15 04:20 stderr.txt
[2025-12-15 04:20:59] HITS file was successfully produced:
[2025-12-15 04:20:59] -rw------- 1 boinc boinc 221778504 Dec 15 04:19 shared/HITS.pool.root.1
[2025-12-15 04:20:59]  *** Contents of shared directory: ***
[2025-12-15 04:20:59] total 438044
[2025-12-15 04:20:59] -rw-r--r-- 2 boinc boinc 224361048 Dec 15 01:27 ATLAS.root_0
[2025-12-15 04:20:59] -rw-r--r-- 2 boinc boinc    592401 Dec 15 01:27 input.tar.gz
[2025-12-15 04:20:59] -rw-r--r-- 2 boinc boinc     15847 Dec 15 01:27 start_atlas.sh
[2025-12-15 04:20:59] -rw------- 1 boinc boinc 221778504 Dec 15 04:19 HITS.pool.root.1
[2025-12-15 04:20:59] -rw------- 1 boinc boinc   1792000 Dec 15 04:20 result.tar.gz
04:21:21 (1746212): run_atlas exited; CPU time 20266.385230
04:21:21 (1746212): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN