Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:34:27 (21803): wrapper (7.7.26015): starting
07:34:27 (21803): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 07:34:27] Arguments: --nthreads 12
[2025-12-14 07:34:27] Threads: 12
[2025-12-14 07:34:27] Checking for CVMFS
[2025-12-14 07:34:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 07:34:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 07:34:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 07:34:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 07:34:27] 2.11.2.0 22587 28150 90940 153996 3 56 17701562 20275200 1 130560 0 9469786 99.892 1835088 41219 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 07:34:27] CVMFS is ok
[2025-12-14 07:34:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 07:34:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 07:34:27] Further information can be found at the LHC@home message board.
[2025-12-14 07:34:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 07:34:27] Checking for apptainer binary...
[2025-12-14 07:34:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 07:34:27] Running /usr/bin/apptainer --version
[2025-12-14 07:34:27] apptainer version 1.3.2-1.el7
[2025-12-14 07:34:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 07:34:29] c-205-13.aglt2.org
[2025-12-14 07:34:29] apptainer works
[2025-12-14 07:34:29] Set ATHENA_PROC_NUMBER=12
[2025-12-14 07:34:29] Set ATHENA_CORE_NUMBER=12
[2025-12-14 07:34:29] Starting ATLAS job with PandaID=6929435778
[2025-12-14 07:34:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 09:15:22]  *** The last 200 lines of the pilot log: ***
[2025-12-14 09:15:22]  protocol_id=None
[2025-12-14 09:15:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 09:15:22]  replicas=None
[2025-12-14 09:15:22]  scope=mc23_13p6TeV
[2025-12-14 09:15:22]  status=None
[2025-12-14 09:15:22]  status_code=0
[2025-12-14 09:15:22]  storage_token=
[2025-12-14 09:15:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929435778/log.47898763._008190.job.log.tgz.1
[2025-12-14 09:15:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/7c/log.47898763._008190.job.log.tgz.1
[2025-12-14 09:15:22]  workdir=None
[2025-12-14 09:15:22] ]
[2025-12-14 09:15:22] 2025-12-14 14:14:41,244 | INFO     | transferring file log.47898763._008190.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929435778/log.47898763._008190.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 09:15:22] 2025-12-14 14:14:41,244 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929435778/log.47898763._008190.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._008190.job
[2025-12-14 09:15:22] 2025-12-14 14:14:41,271 | INFO     | adding to output.list: log.47898763._008190.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/7c/log.47898763._008190.job.log.tg
[2025-12-14 09:15:22] 2025-12-14 14:14:41,272 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 09:15:22] 2025-12-14 14:14:41,272 | INFO     | summary of transferred files:
[2025-12-14 09:15:22] 2025-12-14 14:14:41,272 | INFO     |  -- lfn=log.47898763._008190.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 09:15:22] 2025-12-14 14:14:41,272 | INFO     | stage-out finished correctly
[2025-12-14 09:15:22] 2025-12-14 14:14:41,353 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 09:15:22] 2025-12-14 14:14:43,157 | INFO     | time since job start (5999s) is within the limit (174528.0s)
[2025-12-14 09:15:22] 2025-12-14 14:14:43,549 | INFO     | job 6929435778 has state=finished
[2025-12-14 09:15:22] 2025-12-14 14:14:43,549 | INFO     | preparing for final server update for job 6929435778 in state='finished'
[2025-12-14 09:15:22] 2025-12-14 14:14:43,550 | INFO     | this job has now completed (state=finished)
[2025-12-14 09:15:22] 2025-12-14 14:14:43,550 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 09:15:22] 2025-12-14 14:14:43,550 | INFO     | log transfer has been attempted: DONE
[2025-12-14 09:15:22] 2025-12-14 14:14:43,550 | INFO     | job 6929435778 has finished - writing final server update
[2025-12-14 09:15:22] 2025-12-14 14:14:43,551 | INFO     | total number of processed events: 400 (read)
[2025-12-14 09:15:22] 2025-12-14 14:14:43,552 | INFO     | executing command: lscpu
[2025-12-14 09:15:22] 2025-12-14 14:14:43,578 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 09:15:22] 2025-12-14 14:14:44,276 | INFO     | PID=25488 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 09:15:22] 2025-12-14 14:14:45,277 | INFO     | time since job start (6001s) is within the limit (174528.0s)
[2025-12-14 09:15:22] 2025-12-14 14:14:46,875 | WARNING  | process 32670 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 09:15:22] 2025-12-14 14:14:46,875 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929435778/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 09:15:22] 2025-12-14 14:14:46,962 | INFO     | number of running child processes to parent process 32670: 1
[2025-12-14 09:15:22] 2025-12-14 14:14:46,962 | INFO     | maximum number of monitored processes: 6
[2025-12-14 09:15:22] 2025-12-14 14:14:47,281 | INFO     | time since job start (6003s) is within the limit (174528.0s)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,286 | INFO     | time since job start (6005s) is within the limit (174528.0s)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,465 | INFO     | monitor loop #443: job 0:6929435778 is in state 'finished'
[2025-12-14 09:15:22] 2025-12-14 14:14:49,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,470 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 09:15:22] 2025-12-14 14:14:49,474 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-14 09:15:22] 2025-12-14 14:14:49,476 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929435778/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,477 | INFO     | extracted standard info from prmon json
[2025-12-14 09:15:22] 2025-12-14 14:14:49,477 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 09:15:22] 2025-12-14 14:14:49,477 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 09:15:22] 2025-12-14 14:14:49,478 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 09:15:22] 2025-12-14 14:14:49,478 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 09:15:22] 2025-12-14 14:14:49,480 | INFO     | fitting pss+swap vs Time
[2025-12-14 09:15:22] 2025-12-14 14:14:49,481 | INFO     | sum of square deviations: 233641590.0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,481 | INFO     | sum of deviations: -15291866008.000002
[2025-12-14 09:15:22] 2025-12-14 14:14:49,481 | INFO     | mean x: 1765718763.0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,481 | INFO     | mean y: 2784516.3076923075
[2025-12-14 09:15:22] 2025-12-14 14:14:49,481 | INFO     | intersect: 115569258497.27792
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | chi2: 0.07173203105595104
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | current memory leak: -65.45 B/s (using 91 data points, chi2=0.07)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | could have reported an average CPU frequency of 2152 MHz (7 samples)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | ..............................
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | . Timing measurements:
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | . get job = 0 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,482 | INFO     | . initial setup = 2 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,483 | INFO     | . payload setup = 6 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,483 | INFO     | . stage-in = 0 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,483 | INFO     | . payload execution = 5969 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,483 | INFO     | . stage-out = 0 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,483 | INFO     | . log creation = 0 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,483 | INFO     | ..............................
[2025-12-14 09:15:22] 2025-12-14 14:14:49,562 | INFO     | 
[2025-12-14 09:15:22] 2025-12-14 14:14:49,562 | INFO     | job summary report
[2025-12-14 09:15:22] 2025-12-14 14:14:49,563 | INFO     | --------------------------------------------------
[2025-12-14 09:15:22] 2025-12-14 14:14:49,563 | INFO     | PanDA job id: 6929435778
[2025-12-14 09:15:22] 2025-12-14 14:14:49,563 | INFO     | task id: 47898763
[2025-12-14 09:15:22] 2025-12-14 14:14:49,563 | INFO     | errors: (none)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,563 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 09:15:22] 2025-12-14 14:14:49,563 | INFO     | pilot state: finished 
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | transexitcode: 0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | exeerrorcode: 0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | exeerrordiag: 
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | exitcode: 0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | exitmsg: OK
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | cpuconsumptiontime: 66742 s
[2025-12-14 09:15:22] 2025-12-14 14:14:49,564 | INFO     | nevents: 400
[2025-12-14 09:15:22] 2025-12-14 14:14:49,565 | INFO     | neventsw: 0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,565 | INFO     | pid: 32670
[2025-12-14 09:15:22] 2025-12-14 14:14:49,565 | INFO     | pgrp: 32670
[2025-12-14 09:15:22] 2025-12-14 14:14:49,565 | INFO     | corecount: 12
[2025-12-14 09:15:22] 2025-12-14 14:14:49,565 | INFO     | event service: False
[2025-12-14 09:15:22] 2025-12-14 14:14:49,565 | INFO     | sizes: {0: 2283952, 5: 2284214, 11: 2284270, 5979: 2311056, 5980: 2320109, 5981: 2320109, 5989: 2320431}
[2025-12-14 09:15:22] 2025-12-14 14:14:49,566 | INFO     | --------------------------------------------------
[2025-12-14 09:15:22] 2025-12-14 14:14:49,566 | INFO     | 
[2025-12-14 09:15:22] 2025-12-14 14:14:49,566 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 09:15:22] 2025-12-14 14:14:49,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,591 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,594 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,594 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 09:15:22] 2025-12-14 14:14:49,594 | INFO     | job 6929435778 has completed (purged errors)
[2025-12-14 09:15:22] 2025-12-14 14:14:49,595 | INFO     | overall cleanup function is called
[2025-12-14 09:15:22] 2025-12-14 14:14:50,603 | INFO     | --- collectZombieJob: --- 10, [32670]
[2025-12-14 09:15:22] 2025-12-14 14:14:50,603 | INFO     | zombie collector waiting for pid 32670
[2025-12-14 09:15:22] 2025-12-14 14:14:50,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 09:15:22] 2025-12-14 14:14:50,603 | INFO     | collected zombie processes
[2025-12-14 09:15:22] 2025-12-14 14:14:50,604 | INFO     | will attempt to kill all subprocesses of pid=32670
[2025-12-14 09:15:22] 2025-12-14 14:14:50,693 | INFO     | process IDs to be killed: [32670] (in reverse order)
[2025-12-14 09:15:22] 2025-12-14 14:14:50,745 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 09:15:22] 2025-12-14 14:14:50,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 09:15:22] 2025-12-14 14:14:50,749 | INFO     | did not find any defunct processes belonging to 32670
[2025-12-14 09:15:22] 2025-12-14 14:14:50,752 | INFO     | did not find any defunct processes belonging to 32670
[2025-12-14 09:15:22] 2025-12-14 14:14:50,752 | INFO     | ready for new job
[2025-12-14 09:15:22] 2025-12-14 14:14:50,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 09:15:22] 2025-12-14 14:14:50,754 | INFO     | ***************************************
[2025-12-14 09:15:22] 2025-12-14 14:14:50,754 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 09:15:22] 2025-12-14 14:14:50,754 | INFO     | ***************************************
[2025-12-14 09:15:22] 2025-12-14 14:14:50,754 | INFO     | 
[2025-12-14 09:15:22] 2025-12-14 14:14:50,755 | INFO     | architecture information:
[2025-12-14 09:15:22] 2025-12-14 14:14:50,755 | INFO     | executing command: cat /etc/os-release
[2025-12-14 09:15:22] 2025-12-14 14:14:50,770 | INFO     | cat /etc/os-release:
[2025-12-14 09:15:22] NAME="CentOS Linux"
[2025-12-14 09:15:22] VERSION="7 (Core)"
[2025-12-14 09:15:22] ID="centos"
[2025-12-14 09:15:22] ID_LIKE="rhel fedora"
[2025-12-14 09:15:22] VERSION_ID="7"
[2025-12-14 09:15:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 09:15:22] ANSI_COLOR="0;31"
[2025-12-14 09:15:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 09:15:22] HOME_URL="https://www.centos.org/"
[2025-12-14 09:15:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 09:15:22] 
[2025-12-14 09:15:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 09:15:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 09:15:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 09:15:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 09:15:22] 
[2025-12-14 09:15:22] 2025-12-14 14:14:50,770 | INFO     | ***************************************
[2025-12-14 09:15:22] 2025-12-14 14:14:51,274 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 09:15:22] 2025-12-14 14:14:51,327 | INFO     | sufficient remaining disk space (29315039232 B)
[2025-12-14 09:15:22] 2025-12-14 14:14:51,327 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 09:15:22] 2025-12-14 14:14:51,328 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 09:15:22] 2025-12-14 14:14:51,328 | INFO     | update_server=False
[2025-12-14 09:15:22] 2025-12-14 14:14:51,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 09:15:22] 2025-12-14 14:14:51,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:15:22] 2025-12-14 14:14:51,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:15:22] 2025-12-14 14:14:51,329 | INFO     | aborting loop
[2025-12-14 09:15:22] 2025-12-14 14:14:51,637 | INFO     | all data control threads have been joined
[2025-12-14 09:15:22] 2025-12-14 14:14:51,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 09:15:22] 2025-12-14 14:14:51,938 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 09:15:22] 2025-12-14 14:14:52,055 | INFO     | all job control threads have been joined
[2025-12-14 09:15:22] 2025-12-14 14:14:52,133 | INFO     | all payload control threads have been joined
[2025-12-14 09:15:22] 2025-12-14 14:14:52,334 | INFO     | [job] retrieve thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:52,334 | INFO     | [job] queue monitor thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:52,335 | INFO     | [job] job monitor thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:52,641 | INFO     | [data] control thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:52,693 | INFO     | [payload] validate_post thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:52,813 | INFO     | [data] copytool_in thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,061 | INFO     | [job] control thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,068 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,103 | INFO     | [job] validate thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,134 | INFO     | [payload] control thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,528 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,601 | INFO     | [payload] failed_post thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,764 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,764 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,870 | INFO     | [data] copytool_out thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:53,870 | INFO     | [monitor] cgroup control has ended
[2025-12-14 09:15:22] 2025-12-14 14:14:55,944 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 09:15:22] 2025-12-14 14:14:56,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140061886359360)>', '<ExcThread(monitor, started 140061215545088)>']
[2025-12-14 09:15:22] 2025-12-14 14:15:01,475 | INFO     | all workflow threads have been joined
[2025-12-14 09:15:22] 2025-12-14 14:15:01,475 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 09:15:22] 2025-12-14 14:15:01,475 | INFO     | traces error code: 0
[2025-12-14 09:15:22] 2025-12-14 14:15:01,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 09:15:22] 2025-12-14 14:15:22,476 | INFO     | PID=25488 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 09:15:22] 2025-12-14 14:15:22,481 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 09:15:22] 2025-12-14 14:15:22,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 09:15:22] 2025-12-14 14:15:22,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 09:15:22] 2025-12-14 14:15:22,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 09:15:22] 2025-12-14 14:15:22,481 | INFO     | [monitor] control thread has ended
[2025-12-14 09:15:22] 2025-12-14 14:15:22,569 [wrapper] ==== pilot stdout END ====
[2025-12-14 09:15:22] 2025-12-14 14:15:22,572 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 09:15:22] 2025-12-14 14:15:22,576 [wrapper] pilotpid: 25488
[2025-12-14 09:15:22] 2025-12-14 14:15:22,579 [wrapper] Pilot exit status: 0
[2025-12-14 09:15:22] 2025-12-14 14:15:22,594 [wrapper] pandaids: 6929435778
[2025-12-14 09:15:22] 2025-12-14 14:15:22,635 [wrapper] cleanup supervisor_pilot 31042 25489
[2025-12-14 09:15:22] 2025-12-14 14:15:22,639 [wrapper] Test setup, not cleaning
[2025-12-14 09:15:22] 2025-12-14 14:15:22,643 [wrapper] apfmon messages muted
[2025-12-14 09:15:22] 2025-12-14 14:15:22,647 [wrapper] ==== wrapper stdout END ====
[2025-12-14 09:15:22] 2025-12-14 14:15:22,651 [wrapper] ==== wrapper stderr END ====
[2025-12-14 09:15:22]  *** Error codes and diagnostics ***
[2025-12-14 09:15:22]     "exeErrorCode": 0,
[2025-12-14 09:15:22]     "exeErrorDiag": "",
[2025-12-14 09:15:22]     "pilotErrorCode": 0,
[2025-12-14 09:15:22]     "pilotErrorDiag": "",
[2025-12-14 09:15:22]  *** Listing of results directory ***
[2025-12-14 09:15:22] total 441436
[2025-12-14 09:15:22] -rwx------ 1 boincer umatlas     36322 Dec 14 02:47 runpilot2-wrapper.sh
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas      5112 Dec 14 02:47 queuedata.json
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas    579449 Dec 14 02:47 pilot3.tar.gz
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas       100 Dec 14 07:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 09:15:22] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 07:34 run_atlas
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas       105 Dec 14 07:34 job.xml
[2025-12-14 09:15:22] -rw-r--r-- 2 boincer umatlas 224126348 Dec 14 07:34 EVNT.47898761._000328.pool.root.1
[2025-12-14 09:15:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 07:34 start_atlas.sh
[2025-12-14 09:15:22] drwxrwx--x 2 boincer umatlas      4096 Dec 14 07:34 shared
[2025-12-14 09:15:22] -rw-r--r-- 2 boincer umatlas    592389 Dec 14 07:34 input.tar.gz
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas         0 Dec 14 07:34 boinc_lockfile
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas      2504 Dec 14 07:34 pandaJob.out
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas        57 Dec 14 07:34 setup.sh.local
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas    991728 Dec 14 07:34 agis_schedconf.cvmfs.json
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas   1516240 Dec 14 07:34 agis_ddmendpoints.agis.ALL.json
[2025-12-14 09:15:22] drwx------ 5 boincer umatlas      4096 Dec 14 07:34 pilot3
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas      5953 Dec 14 09:09 init_data.xml
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas 221467584 Dec 14 09:14 HITS.47898763._008190.pool.root.1
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas       529 Dec 14 09:14 boinc_task_state.xml
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas      1044 Dec 14 09:14 memory_monitor_summary.json
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas    404000 Dec 14 09:14 log.47898763._008190.job.log.tgz.1
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas      7848 Dec 14 09:14 heartbeat.json
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 09:15 boinc_mmap_file
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas        27 Dec 14 09:15 wrapper_checkpoint.txt
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas        95 Dec 14 09:15 pilot_heartbeat.json
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas       745 Dec 14 09:15 pilotlog.txt
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas    852663 Dec 14 09:15 log.47898763._008190.job.log.1
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas       357 Dec 14 09:15 output.list
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas       620 Dec 14 09:15 runtime_log
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas   1280000 Dec 14 09:15 result.tar.gz
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 09:15 runtime_log.err
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas       660 Dec 14 09:15 eUXNDm1zvo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8mQKDm1IuwKn.diag
[2025-12-14 09:15:22] -rw-r--r-- 1 boincer umatlas     21948 Dec 14 09:15 stderr.txt
[2025-12-14 09:15:22] HITS file was successfully produced:
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas 221467584 Dec 14 09:14 shared/HITS.pool.root.1
[2025-12-14 09:15:22]  *** Contents of shared directory: ***
[2025-12-14 09:15:22] total 437008
[2025-12-14 09:15:22] -rw-r--r-- 2 boincer umatlas 224126348 Dec 14 07:34 ATLAS.root_0
[2025-12-14 09:15:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 07:34 start_atlas.sh
[2025-12-14 09:15:22] -rw-r--r-- 2 boincer umatlas    592389 Dec 14 07:34 input.tar.gz
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas 221467584 Dec 14 09:14 HITS.pool.root.1
[2025-12-14 09:15:22] -rw------- 1 boincer umatlas   1280000 Dec 14 09:15 result.tar.gz
09:15:24 (21803): run_atlas exited; CPU time 66735.875926
09:15:24 (21803): called boinc_finish(0)

</stderr_txt>
]]>

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