Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:16:42 (189221): wrapper (7.7.26015): starting
03:16:42 (189221): wrapper: running run_atlas (--nthreads 4)
[2025-12-16 03:16:42] Arguments: --nthreads 4
[2025-12-16 03:16:42] Threads: 4
[2025-12-16 03:16:42] Checking for CVMFS
[2025-12-16 03:16:42] No cvmfs_config command found, will try listing directly
[2025-12-16 03:16:42] CVMFS is ok
[2025-12-16 03:16:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 03:16:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-16 03:16:42] Further information can be found at the LHC@home message board.
[2025-12-16 03:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 03:16:42] Checking for apptainer binary...
[2025-12-16 03:16:42] which: no apptainer in ((null))
[2025-12-16 03:16:42] apptainer is not installed, using version from CVMFS
[2025-12-16 03:16:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 03:16:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-12-16 03:16:42] apptainer works
[2025-12-16 03:16:42] Set ATHENA_PROC_NUMBER=4
[2025-12-16 03:16:42] Set ATHENA_CORE_NUMBER=4
[2025-12-16 03:16:42] Starting ATLAS job with PandaID=6929364838
[2025-12-16 03:16:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 09:32:34]  *** The last 200 lines of the pilot log: ***
[2025-12-16 09:32:34] 2025-12-16 08:05:40,480 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2574.0478749999997
[2025-12-16 09:32:34] 2025-12-16 08:05:40,489 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6929364838/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,489 | INFO     | extracted standard info from prmon json
[2025-12-16 09:32:34] 2025-12-16 08:05:40,490 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 09:32:34] 2025-12-16 08:05:40,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 09:32:34] 2025-12-16 08:05:40,491 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 09:32:34] 2025-12-16 08:05:40,491 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 09:32:34] 2025-12-16 08:05:40,498 | INFO     | fitting pss+swap vs Time
[2025-12-16 09:32:34] 2025-12-16 08:05:40,499 | INFO     | sum of square deviations: 12512874612.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,503 | INFO     | sum of deviations: -36391284413.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,503 | INFO     | mean x: 1765861869.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,503 | INFO     | mean y: 2362187.664723032
[2025-12-16 09:32:34] 2025-12-16 08:05:40,504 | INFO     | intersect: 5138031128.774604
[2025-12-16 09:32:34] 2025-12-16 08:05:40,504 | INFO     | chi2: 2.258300118611239
[2025-12-16 09:32:34] 2025-12-16 08:05:40,505 | INFO     | sum of square deviations: 11973599384.5
[2025-12-16 09:32:34] 2025-12-16 08:05:40,509 | INFO     | sum of deviations: -14320360945.499994
[2025-12-16 09:32:34] 2025-12-16 08:05:40,509 | INFO     | mean x: 1765861716.5
[2025-12-16 09:32:34] 2025-12-16 08:05:40,509 | INFO     | mean y: 2368358.103550296
[2025-12-16 09:32:34] 2025-12-16 08:05:40,509 | INFO     | intersect: 2114329544.382722
[2025-12-16 09:32:34] 2025-12-16 08:05:40,510 | INFO     | chi2: 1.4971782060397247
[2025-12-16 09:32:34] 2025-12-16 08:05:40,510 | INFO     | current chi2=1.4971782060397247 (change=33.70331101251381 %)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,511 | INFO     | sum of square deviations: 11450045382.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,514 | INFO     | sum of deviations: -13823822623.000013
[2025-12-16 09:32:34] 2025-12-16 08:05:40,515 | INFO     | mean x: 1765861564.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,515 | INFO     | mean y: 2368502.7447447446
[2025-12-16 09:32:34] 2025-12-16 08:05:40,515 | INFO     | intersect: 2134321366.083133
[2025-12-16 09:32:34] 2025-12-16 08:05:40,516 | INFO     | chi2: 1.4970798012758857
[2025-12-16 09:32:34] 2025-12-16 08:05:40,516 | INFO     | current chi2=1.4970798012758857 (change=0.006572682092356945 %)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,516 | INFO     | right removable region: 332
[2025-12-16 09:32:34] 2025-12-16 08:05:40,517 | INFO     | sum of square deviations: 11973599384.5
[2025-12-16 09:32:34] 2025-12-16 08:05:40,520 | INFO     | sum of deviations: -81010101114.5
[2025-12-16 09:32:34] 2025-12-16 08:05:40,520 | INFO     | mean x: 1765862021.5
[2025-12-16 09:32:34] 2025-12-16 08:05:40,521 | INFO     | mean y: 2374709.198224852
[2025-12-16 09:32:34] 2025-12-16 08:05:40,521 | INFO     | intersect: 11949714545.968958
[2025-12-16 09:32:34] 2025-12-16 08:05:40,521 | INFO     | chi2: 0.9270773147143342
[2025-12-16 09:32:34] 2025-12-16 08:05:40,522 | INFO     | current chi2=0.9270773147143342 (change=58.94800221307837 %)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,522 | INFO     | sum of square deviations: 11450045382.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,526 | INFO     | sum of deviations: -82224106553.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,526 | INFO     | mean x: 1765862174.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,526 | INFO     | mean y: 2375062.6546546547
[2025-12-16 09:32:34] 2025-12-16 08:05:40,526 | INFO     | intersect: 12683236553.487148
[2025-12-16 09:32:34] 2025-12-16 08:05:40,527 | INFO     | chi2: 0.9211162047166471
[2025-12-16 09:32:34] 2025-12-16 08:05:40,527 | INFO     | current chi2=0.9211162047166471 (change=0.643000308935819 %)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,527 | INFO     | left removable region: 20
[2025-12-16 09:32:34] 2025-12-16 08:05:40,528 | INFO     | sum of square deviations: 9417545878.0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,531 | INFO     | sum of deviations: -46036773932.00001
[2025-12-16 09:32:34] 2025-12-16 08:05:40,531 | INFO     | mean x: 1765862143.5
[2025-12-16 09:32:34] 2025-12-16 08:05:40,532 | INFO     | mean y: 2377883.3525641025
[2025-12-16 09:32:34] 2025-12-16 08:05:40,532 | INFO     | intersect: 8634626385.087599
[2025-12-16 09:32:34] 2025-12-16 08:05:40,532 | INFO     | chi2: 0.13505795374951435
[2025-12-16 09:32:34] 2025-12-16 08:05:40,533 | INFO     | current memory leak: -4.89 B/s (using 312 data points, chi2=0.14)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,533 | INFO     | could have reported an average CPU frequency of 2533 MHz (15 samples)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,533 | INFO     | ..............................
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . Timing measurements:
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . get job = 0 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . initial setup = 1 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . payload setup = 5 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . stage-in = 0 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . payload execution = 20895 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . stage-out = 1 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,534 | INFO     | . log creation = 0 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,535 | INFO     | ..............................
[2025-12-16 09:32:34] 2025-12-16 08:05:40,647 | INFO     | 
[2025-12-16 09:32:34] 2025-12-16 08:05:40,648 | INFO     | job summary report
[2025-12-16 09:32:34] 2025-12-16 08:05:40,648 | INFO     | --------------------------------------------------
[2025-12-16 09:32:34] 2025-12-16 08:05:40,648 | INFO     | PanDA job id: 6929364838
[2025-12-16 09:32:34] 2025-12-16 08:05:40,648 | INFO     | task id: 47898763
[2025-12-16 09:32:34] 2025-12-16 08:05:40,648 | INFO     | errors: (none)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,648 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | pilot state: finished 
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | transexitcode: 0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | exeerrorcode: 0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | exeerrordiag: 
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | exitcode: 0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | exitmsg: OK
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | cpuconsumptiontime: 79237 s
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | nevents: 400
[2025-12-16 09:32:34] 2025-12-16 08:05:40,649 | INFO     | neventsw: 0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | pid: 209970
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | pgrp: 209970
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | corecount: 4
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | event service: False
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | sizes: {0: 2283790, 1: 2283989, 5: 2284251, 11: 2284307, 20905: 2317841, 20907: 2326861, 20908: 2327045, 20913: 2327239}
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | --------------------------------------------------
[2025-12-16 09:32:34] 2025-12-16 08:05:40,650 | INFO     | 
[2025-12-16 09:32:34] 2025-12-16 08:05:40,651 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-12-16 09:32:34] 2025-12-16 08:05:40,674 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,675 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,677 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 09:32:34] 2025-12-16 08:05:40,677 | INFO     | job 6929364838 has completed (purged errors)
[2025-12-16 09:32:34] 2025-12-16 08:05:40,677 | INFO     | overall cleanup function is called
[2025-12-16 09:32:34] 2025-12-16 08:05:41,684 | INFO     | --- collectZombieJob: --- 10, [209970]
[2025-12-16 09:32:34] 2025-12-16 08:05:41,685 | INFO     | zombie collector waiting for pid 209970
[2025-12-16 09:32:34] 2025-12-16 08:05:41,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 09:32:34] 2025-12-16 08:05:41,685 | INFO     | collected zombie processes
[2025-12-16 09:32:34] 2025-12-16 08:05:41,685 | INFO     | will attempt to kill all subprocesses of pid=209970
[2025-12-16 09:32:34] 2025-12-16 08:05:42,044 | INFO     | process IDs to be killed: [209970] (in reverse order)
[2025-12-16 09:32:34] 2025-12-16 08:05:42,134 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 09:32:34] 2025-12-16 08:05:42,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 09:32:34] 2025-12-16 08:05:42,144 | INFO     | did not find any defunct processes belonging to 209970
[2025-12-16 09:32:34] 2025-12-16 08:05:42,152 | INFO     | did not find any defunct processes belonging to 209970
[2025-12-16 09:32:34] 2025-12-16 08:05:42,153 | INFO     | ready for new job
[2025-12-16 09:32:34] 2025-12-16 08:05:42,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 09:32:34] 2025-12-16 08:05:42,156 | INFO     | ***************************************
[2025-12-16 09:32:34] 2025-12-16 08:05:42,156 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 09:32:34] 2025-12-16 08:05:42,156 | INFO     | ***************************************
[2025-12-16 09:32:34] 2025-12-16 08:05:42,156 | INFO     | 
[2025-12-16 09:32:34] 2025-12-16 08:05:42,159 | INFO     | architecture information:
[2025-12-16 09:32:34] 2025-12-16 08:05:42,159 | INFO     | executing command: cat /etc/os-release
[2025-12-16 09:32:34] 2025-12-16 08:05:42,174 | INFO     | cat /etc/os-release:
[2025-12-16 09:32:34] NAME="CentOS Linux"
[2025-12-16 09:32:34] VERSION="7 (Core)"
[2025-12-16 09:32:34] ID="centos"
[2025-12-16 09:32:34] ID_LIKE="rhel fedora"
[2025-12-16 09:32:34] VERSION_ID="7"
[2025-12-16 09:32:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 09:32:34] ANSI_COLOR="0;31"
[2025-12-16 09:32:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 09:32:34] HOME_URL="https://www.centos.org/"
[2025-12-16 09:32:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 09:32:34] 
[2025-12-16 09:32:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 09:32:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 09:32:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 09:32:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 09:32:34] 
[2025-12-16 09:32:34] 2025-12-16 08:05:42,174 | INFO     | ***************************************
[2025-12-16 09:32:34] 2025-12-16 08:05:42,677 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-12-16 09:32:34] 2025-12-16 08:05:42,694 | INFO     | sufficient remaining disk space (1671466844160 B)
[2025-12-16 09:32:34] 2025-12-16 08:05:42,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 09:32:34] 2025-12-16 08:05:42,695 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 09:32:34] 2025-12-16 08:05:42,695 | INFO     | update_server=False
[2025-12-16 09:32:34] 2025-12-16 08:05:42,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 09:32:34] 2025-12-16 08:05:42,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 09:32:34] 2025-12-16 08:05:42,754 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-16 09:32:34] 2025-12-16 08:05:42,754 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-16 09:32:34] 2025-12-16 08:05:42,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 09:32:34] 2025-12-16 08:05:42,755 | INFO     | will abort loop
[2025-12-16 09:32:34] 2025-12-16 08:05:42,877 | INFO     | all payload control threads have been joined
[2025-12-16 09:32:34] 2025-12-16 08:05:42,900 | INFO     | all job control threads have been joined
[2025-12-16 09:32:34] 2025-12-16 08:05:43,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 09:32:34] 2025-12-16 08:05:43,500 | INFO     | all data control threads have been joined
[2025-12-16 09:32:34] 2025-12-16 08:05:43,700 | INFO     | [job] retrieve thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:43,758 | INFO     | [payload] validate_post thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:43,760 | INFO     | [job] job monitor thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:43,882 | INFO     | [payload] control thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:43,900 | INFO     | [job] control thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,366 | INFO     | [payload] failed_post thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,453 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,470 | INFO     | [data] copytool_in thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,506 | INFO     | [data] control thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,538 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,775 | INFO     | [job] validate thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:44,988 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:45,476 | INFO     | [data] copytool_out thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:45,656 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 09:32:34] 2025-12-16 08:05:46,662 | INFO     | [job] queue monitor thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:46,701 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:05:53,147 | INFO     | job.realtimelogging is not enabled
[2025-12-16 09:32:34] 2025-12-16 08:05:54,152 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 09:32:34] 2025-12-16 08:06:12,299 | INFO     | PID=195952 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-16 09:32:34] 2025-12-16 08:06:12,299 | INFO     | .. there are 3 such processes running
[2025-12-16 09:32:34] 2025-12-16 08:06:12,300 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 09:32:34] 2025-12-16 08:06:12,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 09:32:34] 2025-12-16 08:06:12,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 09:32:34] 2025-12-16 08:06:26,854 | INFO     | [monitor] cgroup control has ended
[2025-12-16 09:32:34] 2025-12-16 08:06:28,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23104400525120)>', '<ExcThread(monitor, started 23104090769152)>']
[2025-12-16 09:32:34] 2025-12-16 08:06:28,379 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 09:32:34] 2025-12-16 08:06:28,380 | INFO     | [monitor] control thread has ended
[2025-12-16 09:32:34] 2025-12-16 08:06:33,305 | INFO     | all workflow threads have been joined
[2025-12-16 09:32:34] 2025-12-16 08:06:33,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 09:32:34] 2025-12-16 08:06:33,306 | INFO     | traces error code: 0
[2025-12-16 09:32:34] 2025-12-16 08:06:33,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 09:32:34] 2025-12-16 08:06:33,445 [wrapper] ==== pilot stdout END ====
[2025-12-16 09:32:34] 2025-12-16 08:06:33,450 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 09:32:34] 2025-12-16 08:06:33,452 [wrapper] pilotpid: 195952
[2025-12-16 09:32:34] 2025-12-16 08:06:33,454 [wrapper] Pilot exit status: 0
[2025-12-16 09:32:34] 2025-12-16 08:06:33,464 [wrapper] pandaids: 6929364838
[2025-12-16 09:32:34] 2025-12-16 08:06:33,520 [wrapper] cleanup supervisor_pilot  472279 195953
[2025-12-16 09:32:34] 2025-12-16 08:06:33,524 [wrapper] Test setup, not cleaning
[2025-12-16 09:32:34] 2025-12-16 08:06:33,527 [wrapper] apfmon messages muted
[2025-12-16 09:32:34] 2025-12-16 08:06:33,529 [wrapper] ==== wrapper stdout END ====
[2025-12-16 09:32:34] 2025-12-16 08:06:33,532 [wrapper] ==== wrapper stderr END ====
[2025-12-16 09:32:34]  *** Error codes and diagnostics ***
[2025-12-16 09:32:34]     "exeErrorCode": 0,
[2025-12-16 09:32:34]     "exeErrorDiag": "",
[2025-12-16 09:32:34]     "pilotErrorCode": 0,
[2025-12-16 09:32:34]     "pilotErrorDiag": "",
[2025-12-16 09:32:34]  *** Listing of results directory ***
[2025-12-16 09:32:34] total 451312
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc      5112 Dec 14 02:02 queuedata.json
[2025-12-16 09:32:34] -rwx------ 1 boinc boinc     36322 Dec 14 02:02 runpilot2-wrapper.sh
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc    579449 Dec 14 02:02 pilot3.tar.gz
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc       100 Dec 16 03:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 09:32:34] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 03:16 run_atlas
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc       105 Dec 16 03:16 job.xml
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc      6425 Dec 16 03:16 init_data.xml
[2025-12-16 09:32:34] -rw-r--r-- 2 boinc boinc 224789964 Dec 16 03:16 EVNT.47898761._000172.pool.root.1
[2025-12-16 09:32:34] -rw-r--r-- 2 boinc boinc     15847 Dec 16 03:16 start_atlas.sh
[2025-12-16 09:32:34] drwxrwx--x 2 boinc boinc      4096 Dec 16 03:16 shared
[2025-12-16 09:32:34] -rw-r--r-- 2 boinc boinc    592389 Dec 16 03:16 input.tar.gz
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc         0 Dec 16 03:16 boinc_lockfile
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc      2503 Dec 16 03:16 pandaJob.out
[2025-12-16 09:32:34] -rw------- 1 boinc boinc    994523 Dec 16 03:16 agis_schedconf.cvmfs.json
[2025-12-16 09:32:34] drwx------ 5 boinc boinc      4096 Dec 16 03:16 pilot3
[2025-12-16 09:32:34] -rw------- 1 boinc boinc 226573256 Dec 16 09:04 HITS.47898763._007404.pool.root.1
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc       529 Dec 16 09:05 boinc_task_state.xml
[2025-12-16 09:32:34] -rw------- 1 boinc boinc      1036 Dec 16 09:05 memory_monitor_summary.json
[2025-12-16 09:32:34] -rw------- 1 boinc boinc   1516240 Dec 16 09:05 agis_ddmendpoints.agis.ALL.json
[2025-12-16 09:32:34] -rw------- 1 boinc boinc    487475 Dec 16 09:05 log.47898763._007404.job.log.tgz.1
[2025-12-16 09:32:34] -rw------- 1 boinc boinc      7841 Dec 16 09:05 heartbeat.json
[2025-12-16 09:32:34] -rw------- 1 boinc boinc        95 Dec 16 09:06 pilot_heartbeat.json
[2025-12-16 09:32:34] -rw------- 1 boinc boinc      5091 Dec 16 09:06 pilotlog.txt
[2025-12-16 09:32:34] -rw------- 1 boinc boinc   2939925 Dec 16 09:06 log.47898763._007404.job.log.1
[2025-12-16 09:32:34] -rw------- 1 boinc boinc       357 Dec 16 09:06 output.list
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc       620 Dec 16 09:06 runtime_log
[2025-12-16 09:32:34] -rw------- 1 boinc boinc   3450880 Dec 16 09:06 result.tar.gz
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc      9206 Dec 16 09:06 runtime_log.err
[2025-12-16 09:32:34] -rw------- 1 boinc boinc       666 Dec 16 09:06 PYvNDmIgpo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmENQKDmDwtqNm.diag
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc        26 Dec 16 09:32 wrapper_checkpoint.txt
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc      8192 Dec 16 09:32 boinc_mmap_file
[2025-12-16 09:32:34] -rw-r--r-- 1 boinc boinc     20871 Dec 16 09:32 stderr.txt
[2025-12-16 09:32:34] HITS file was successfully produced:
[2025-12-16 09:32:34] -rw------- 1 boinc boinc 226573256 Dec 16 09:04 shared/HITS.pool.root.1
[2025-12-16 09:32:34]  *** Contents of shared directory: ***
[2025-12-16 09:32:34] total 444764
[2025-12-16 09:32:34] -rw-r--r-- 2 boinc boinc 224789964 Dec 16 03:16 ATLAS.root_0
[2025-12-16 09:32:34] -rw-r--r-- 2 boinc boinc     15847 Dec 16 03:16 start_atlas.sh
[2025-12-16 09:32:34] -rw-r--r-- 2 boinc boinc    592389 Dec 16 03:16 input.tar.gz
[2025-12-16 09:32:34] -rw------- 1 boinc boinc 226573256 Dec 16 09:04 HITS.pool.root.1
[2025-12-16 09:32:34] -rw------- 1 boinc boinc   3450880 Dec 16 09:06 result.tar.gz
09:32:36 (189221): run_atlas exited; CPU time 80055.196244
09:32:36 (189221): called boinc_finish(0)

</stderr_txt>
]]>

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