Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:00:45 (25598): wrapper (7.7.26015): starting
15:00:45 (25598): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 15:00:45] Arguments: --nthreads 8
[2025-12-14 15:00:45] Threads: 8
[2025-12-14 15:00:45] Checking for CVMFS
[2025-12-14 15:00:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 15:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 15:00:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 15:00:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 15:00:45] 2.11.0.0 7894 91670 125260 153997 1 188 3637882 4096001 1834 130560 2 14604962 99.732 6857389 534 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-14 15:00:45] CVMFS is ok
[2025-12-14 15:00:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 15:00:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 15:00:45] Further information can be found at the LHC@home message board.
[2025-12-14 15:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 15:00:45] Checking for apptainer binary...
[2025-12-14 15:00:45] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-14 15:00:45] apptainer is not installed, using version from CVMFS
[2025-12-14 15:00:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 15:00:45] WARNING: Environment variable TMPDIR already has value [/tmp/job_10974510/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node075
[2025-12-14 15:00:45] apptainer works
[2025-12-14 15:00:45] Set ATHENA_PROC_NUMBER=8
[2025-12-14 15:00:45] Set ATHENA_CORE_NUMBER=8
[2025-12-14 15:00:45] Starting ATLAS job with PandaID=6929309382
[2025-12-14 15:00:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10974510/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 16:04:20]  *** The last 200 lines of the pilot log: ***
[2025-12-14 16:04:20]  is_altstaged=None
[2025-12-14 16:04:20]  is_tar=False
[2025-12-14 16:04:20]  lfn=log.47898836._001680.job.log.tgz.1
[2025-12-14 16:04:20]  mtime=0
[2025-12-14 16:04:20]  protocol_id=None
[2025-12-14 16:04:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 16:04:20]  replicas=None
[2025-12-14 16:04:20]  scope=mc23_13p6TeV
[2025-12-14 16:04:20]  status=None
[2025-12-14 16:04:20]  status_code=0
[2025-12-14 16:04:20]  storage_token=
[2025-12-14 16:04:20]  surl=/tmp/job_10974510/atlas/pilot/slots/0/PanDA_Pilot-6929309382/log.47898836._001680.job.log.tgz.1
[2025-12-14 16:04:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/22/log.47898836._001680.job.log.tgz.1
[2025-12-14 16:04:20]  workdir=None
[2025-12-14 16:04:20] ]
[2025-12-14 16:04:20] 2025-12-14 15:03:45,222 | INFO     | transferring file log.47898836._001680.job.log.tgz.1 from /tmp/job_10974510/atlas/pilot/slots/0/PanDA_Pilot-6929309382/log.47898836._001680.job.log.tgz.1 to /tmp/j
[2025-12-14 16:04:20] 2025-12-14 15:03:45,223 | INFO     | executing command: /usr/bin/env mv /tmp/job_10974510/atlas/pilot/slots/0/PanDA_Pilot-6929309382/log.47898836._001680.job.log.tgz.1 /tmp/job_10974510/atlas/pilot/sl
[2025-12-14 16:04:20] 2025-12-14 15:03:45,230 | INFO     | adding to output.list: log.47898836._001680.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/22/log.47898836._001680.job.log.tg
[2025-12-14 16:04:20] 2025-12-14 15:03:45,231 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 16:04:20] 2025-12-14 15:03:45,231 | INFO     | summary of transferred files:
[2025-12-14 16:04:20] 2025-12-14 15:03:45,231 | INFO     |  -- lfn=log.47898836._001680.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 16:04:20] 2025-12-14 15:03:45,231 | INFO     | stage-out finished correctly
[2025-12-14 16:04:20] 2025-12-14 15:03:45,488 | INFO     | time since job start (3775s) is within the limit (174528.0s)
[2025-12-14 16:04:20] 2025-12-14 15:03:45,488 | INFO     | 3776s have passed since pilot start - server update state is 'RUNNING'
[2025-12-14 16:04:20] 2025-12-14 15:03:45,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | job 6929309382 has state=finished
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | preparing for final server update for job 6929309382 in state='finished'
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | this job has now completed (state=finished)
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | log transfer has been attempted: DONE
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | job 6929309382 has finished - writing final server update
[2025-12-14 16:04:20] 2025-12-14 15:03:46,059 | INFO     | total number of processed events: 400 (read)
[2025-12-14 16:04:20] 2025-12-14 15:03:46,060 | INFO     | executing command: lscpu
[2025-12-14 16:04:20] 2025-12-14 15:03:46,092 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 16:04:20] 2025-12-14 15:03:46,636 | INFO     | monitor loop #281: job 0:6929309382 is in state 'finished'
[2025-12-14 16:04:20] 2025-12-14 15:03:46,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 16:04:20] 2025-12-14 15:03:47,492 | INFO     | time since job start (3777s) is within the limit (174528.0s)
[2025-12-14 16:04:20] 2025-12-14 15:03:47,785 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 16:04:20] 2025-12-14 15:03:47,789 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2848.9574843749997
[2025-12-14 16:04:20] 2025-12-14 15:03:47,794 | INFO     | using path: /tmp/job_10974510/atlas/pilot/slots/0/PanDA_Pilot-6929309382/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 16:04:20] 2025-12-14 15:03:47,795 | INFO     | extracted standard info from prmon json
[2025-12-14 16:04:20] 2025-12-14 15:03:47,795 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 16:04:20] 2025-12-14 15:03:47,795 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 16:04:20] 2025-12-14 15:03:47,795 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 16:04:20] 2025-12-14 15:03:47,795 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | fitting pss+swap vs Time
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | sum of square deviations: 51573060.0
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | sum of deviations: 250550728.9999999
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | mean x: 1765722820.0
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | mean y: 2517780.109090909
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | intersect: -8575665088.290334
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | chi2: 0.0017317763320936492
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | current memory leak: 4.86 B/s (using 55 data points, chi2=0.00)
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | could have reported an average CPU frequency of 2790 MHz (6 samples)
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | ..............................
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | . Timing measurements:
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | . get job = 0 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,796 | INFO     | . initial setup = 1 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,797 | INFO     | . payload setup = 2 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,797 | INFO     | . stage-in = 0 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,797 | INFO     | . payload execution = 3754 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,797 | INFO     | . stage-out = 0 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,797 | INFO     | . log creation = 0 s
[2025-12-14 16:04:20] 2025-12-14 15:03:47,797 | INFO     | ..............................
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | 
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | job summary report
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | --------------------------------------------------
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | PanDA job id: 6929309382
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | task id: 47898836
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | errors: (none)
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | pilot state: finished 
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | transexitcode: 0
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | exeerrorcode: 0
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | exeerrordiag: 
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | exitcode: 0
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | exitmsg: OK
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | cpuconsumptiontime: 27432 s
[2025-12-14 16:04:20] 2025-12-14 15:03:48,201 | INFO     | nevents: 400
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | neventsw: 0
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | pid: 3809
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | pgrp: 3809
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | corecount: 8
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | event service: False
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | sizes: {0: 2284131, 2: 2284393, 11: 2284421, 3760: 2310369, 3762: 2319453, 3764: 2319591}
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | --------------------------------------------------
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | 
[2025-12-14 16:04:20] 2025-12-14 15:03:48,202 | INFO     | executing command: ls -lF /tmp/job_10974510/atlas/pilot/slots/0
[2025-12-14 16:04:20] 2025-12-14 15:03:48,211 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,211 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,211 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | job 6929309382 has completed (purged errors)
[2025-12-14 16:04:20] 2025-12-14 15:03:48,212 | INFO     | overall cleanup function is called
[2025-12-14 16:04:20] 2025-12-14 15:03:49,215 | INFO     | --- collectZombieJob: --- 10, [3809]
[2025-12-14 16:04:20] 2025-12-14 15:03:49,215 | INFO     | zombie collector waiting for pid 3809
[2025-12-14 16:04:20] 2025-12-14 15:03:49,215 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 16:04:20] 2025-12-14 15:03:49,215 | INFO     | collected zombie processes
[2025-12-14 16:04:20] 2025-12-14 15:03:49,215 | INFO     | will attempt to kill all subprocesses of pid=3809
[2025-12-14 16:04:20] 2025-12-14 15:03:49,324 | INFO     | process IDs to be killed: [3809] (in reverse order)
[2025-12-14 16:04:20] 2025-12-14 15:03:49,364 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 16:04:20] 2025-12-14 15:03:49,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 16:04:20] 2025-12-14 15:03:49,368 | INFO     | did not find any defunct processes belonging to 3809
[2025-12-14 16:04:20] 2025-12-14 15:03:49,371 | INFO     | did not find any defunct processes belonging to 3809
[2025-12-14 16:04:20] 2025-12-14 15:03:49,371 | INFO     | ready for new job
[2025-12-14 16:04:20] 2025-12-14 15:03:49,371 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 16:04:20] 2025-12-14 15:03:49,372 | INFO     | ***************************************
[2025-12-14 16:04:20] 2025-12-14 15:03:49,372 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 16:04:20] 2025-12-14 15:03:49,372 | INFO     | ***************************************
[2025-12-14 16:04:20] 2025-12-14 15:03:49,372 | INFO     | 
[2025-12-14 16:04:20] 2025-12-14 15:03:49,385 | INFO     | architecture information:
[2025-12-14 16:04:20] 2025-12-14 15:03:49,385 | INFO     | executing command: cat /etc/os-release
[2025-12-14 16:04:20] 2025-12-14 15:03:49,391 | INFO     | cat /etc/os-release:
[2025-12-14 16:04:20] NAME="CentOS Linux"
[2025-12-14 16:04:20] VERSION="7 (Core)"
[2025-12-14 16:04:20] ID="centos"
[2025-12-14 16:04:20] ID_LIKE="rhel fedora"
[2025-12-14 16:04:20] VERSION_ID="7"
[2025-12-14 16:04:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 16:04:20] ANSI_COLOR="0;31"
[2025-12-14 16:04:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 16:04:20] HOME_URL="https://www.centos.org/"
[2025-12-14 16:04:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 16:04:20] 
[2025-12-14 16:04:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 16:04:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 16:04:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 16:04:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 16:04:20] 
[2025-12-14 16:04:20] 2025-12-14 15:03:49,391 | INFO     | ***************************************
[2025-12-14 16:04:20] 2025-12-14 15:03:49,894 | INFO     | executing command: df -mP /tmp/job_10974510/atlas/pilot/slots/0
[2025-12-14 16:04:20] 2025-12-14 15:03:49,900 | INFO     | sufficient remaining disk space (221376413696 B)
[2025-12-14 16:04:20] 2025-12-14 15:03:49,900 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 16:04:20] 2025-12-14 15:03:49,900 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 16:04:20] 2025-12-14 15:03:49,900 | INFO     | update_server=False
[2025-12-14 16:04:20] 2025-12-14 15:03:49,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 16:04:20] 2025-12-14 15:03:50,077 | INFO     | all payload control threads have been joined
[2025-12-14 16:04:20] 2025-12-14 15:03:50,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 16:04:20] 2025-12-14 15:03:50,144 | INFO     | aborting loop
[2025-12-14 16:04:20] 2025-12-14 15:03:50,392 | INFO     | all data control threads have been joined
[2025-12-14 16:04:20] 2025-12-14 15:03:50,404 | INFO     | all job control threads have been joined
[2025-12-14 16:04:20] 2025-12-14 15:03:50,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 16:04:20] 2025-12-14 15:03:50,905 | INFO     | [job] retrieve thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,063 | INFO     | [payload] validate_post thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,082 | INFO     | [payload] control thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,147 | INFO     | [job] job monitor thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,318 | INFO     | [data] copytool_in thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,397 | INFO     | [data] control thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,409 | INFO     | [job] control thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 16:04:20] 2025-12-14 15:03:51,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:51,852 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:52,253 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:52,280 | INFO     | [payload] failed_post thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:52,299 | INFO     | [job] validate thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:52,343 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:52,794 | INFO     | [data] copytool_out thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:52,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 16:04:20] 2025-12-14 15:03:53,860 | INFO     | [job] queue monitor thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:55,696 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 16:04:20] 2025-12-14 15:03:56,115 | INFO     | [monitor] cgroup control has ended
[2025-12-14 16:04:20] 2025-12-14 15:03:57,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-14 16:04:20] 2025-12-14 15:04:02,374 | INFO     | all workflow threads have been joined
[2025-12-14 16:04:20] 2025-12-14 15:04:02,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 16:04:20] 2025-12-14 15:04:02,374 | INFO     | traces error code: 0
[2025-12-14 16:04:20] 2025-12-14 15:04:02,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | INFO     | PID=29391 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | INFO     | .. there are 5 such processes running
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | CRITICAL | thread 'MainThread' is not alive
[2025-12-14 16:04:20] 2025-12-14 15:04:20,689 | INFO     | [monitor] control thread has ended
[2025-12-14 16:04:20] 2025-12-14 15:04:20,742 [wrapper] ==== pilot stdout END ====
[2025-12-14 16:04:20] 2025-12-14 15:04:20,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 16:04:20] 2025-12-14 15:04:20,744 [wrapper] pilotpid: 29391
[2025-12-14 16:04:20] 2025-12-14 15:04:20,746 [wrapper] Pilot exit status: 0
[2025-12-14 16:04:20] 2025-12-14 15:04:20,750 [wrapper] pandaids: 6929309382
[2025-12-14 16:04:20] 2025-12-14 15:04:20,775 [wrapper] cleanup supervisor_pilot 16522 29392
[2025-12-14 16:04:20] 2025-12-14 15:04:20,776 [wrapper] Test setup, not cleaning
[2025-12-14 16:04:20] 2025-12-14 15:04:20,777 [wrapper] apfmon messages muted
[2025-12-14 16:04:20] 2025-12-14 15:04:20,778 [wrapper] ==== wrapper stdout END ====
[2025-12-14 16:04:20] 2025-12-14 15:04:20,779 [wrapper] ==== wrapper stderr END ====
[2025-12-14 16:04:20]  *** Error codes and diagnostics ***
[2025-12-14 16:04:20]     "exeErrorCode": 0,
[2025-12-14 16:04:20]     "exeErrorDiag": "",
[2025-12-14 16:04:20]     "pilotErrorCode": 0,
[2025-12-14 16:04:20]     "pilotErrorDiag": "",
[2025-12-14 16:04:20]  *** Listing of results directory ***
[2025-12-14 16:04:20] total 412696
[2025-12-14 16:04:20] -rwx------ 1 mf493845 unix-user     36322 Dec 13 12:40 runpilot2-wrapper.sh
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user    579449 Dec 13 12:45 pilot3.tar.gz
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      5112 Dec 13 12:45 queuedata.json
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user       100 Dec 14 14:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 16:04:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec 14 14:05 run_atlas
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user       105 Dec 14 14:05 job.xml
[2025-12-14 16:04:20] -rw-r--r-- 2 mf493845 unix-user 218086333 Dec 14 15:00 EVNT.47898833._000088.pool.root.1
[2025-12-14 16:04:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 15:00 start_atlas.sh
[2025-12-14 16:04:20] drwxrwx--x 2 mf493845 unix-user       100 Dec 14 15:00 shared
[2025-12-14 16:04:20] -rw-r--r-- 2 mf493845 unix-user    592401 Dec 14 15:00 input.tar.gz
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      6391 Dec 14 15:00 init_data.xml
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user         0 Dec 14 15:00 boinc_setup_complete
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      8192 Dec 14 15:00 boinc_mmap_file
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user         0 Dec 14 15:00 boinc_lockfile
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      2548 Dec 14 15:00 pandaJob.out
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user    991736 Dec 14 15:00 agis_schedconf.cvmfs.json
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user   1516240 Dec 14 15:00 agis_ddmendpoints.agis.ALL.json
[2025-12-14 16:04:20] drwx------ 5 mf493845 unix-user       440 Dec 14 15:00 pilot3
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user 198861157 Dec 14 16:03 HITS.47898836._001680.pool.root.1
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      1027 Dec 14 16:03 memory_monitor_summary.json
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user        95 Dec 14 16:03 pilot_heartbeat.json
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user    302856 Dec 14 16:03 log.47898836._001680.job.log.tgz.1
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      7766 Dec 14 16:03 heartbeat.json
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user       890 Dec 14 16:04 pilotlog.txt
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user    582488 Dec 14 16:04 log.47898836._001680.job.log.1
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user       357 Dec 14 16:04 output.list
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user       620 Dec 14 16:04 runtime_log
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user    901120 Dec 14 16:04 result.tar.gz
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user      9220 Dec 14 16:04 runtime_log.err
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user       641 Dec 14 16:04 JjyNDmy9co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwOPKDmzsxaYm.diag
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user     21948 Dec 14 16:04 stderr.txt
[2025-12-14 16:04:20] HITS file was successfully produced:
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user 198861157 Dec 14 16:03 shared/HITS.pool.root.1
[2025-12-14 16:04:20]  *** Contents of shared directory: ***
[2025-12-14 16:04:20] total 408656
[2025-12-14 16:04:20] -rw-r--r-- 2 mf493845 unix-user 218086333 Dec 14 15:00 ATLAS.root_0
[2025-12-14 16:04:20] -rw-r--r-- 2 mf493845 unix-user     15847 Dec 14 15:00 start_atlas.sh
[2025-12-14 16:04:20] -rw-r--r-- 2 mf493845 unix-user    592401 Dec 14 15:00 input.tar.gz
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user 198861157 Dec 14 16:03 HITS.pool.root.1
[2025-12-14 16:04:20] -rw------- 1 mf493845 unix-user    901120 Dec 14 16:04 result.tar.gz
16:04:21 (25598): run_atlas exited; CPU time 27488.591763
16:04:21 (25598): called boinc_finish(0)

</stderr_txt>
]]>

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