Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:10:48 (416101): wrapper (7.7.26015): starting
07:10:48 (416101): wrapper: running run_atlas (--nthreads 9)
[2025-12-14 07:10:48] Arguments: --nthreads 9
[2025-12-14 07:10:48] Threads: 9
[2025-12-14 07:10:48] Checking for CVMFS
[2025-12-14 07:10:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 07:10:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 07:10:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 07:10:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 07:10:50] 2.13.2.0 8902 61745 384216 153994 1 402 39516255 40960001 23126 16776704 0 154190335 99.579 176998903 35462 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 07:10:50] CVMFS is ok
[2025-12-14 07:10:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 07:10:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 07:10:51] Further information can be found at the LHC@home message board.
[2025-12-14 07:10:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 07:10:51] Checking for apptainer binary...
[2025-12-14 07:10:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 07:10:51] Running /usr/bin/apptainer --version
[2025-12-14 07:10:51] apptainer version 1.4.4-1.el9
[2025-12-14 07:10:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 07:10:51] c-211-35-2.aglt2.org
[2025-12-14 07:10:51] apptainer works
[2025-12-14 07:10:51] Set ATHENA_PROC_NUMBER=9
[2025-12-14 07:10:51] Set ATHENA_CORE_NUMBER=9
[2025-12-14 07:10:51] Starting ATLAS job with PandaID=6929301148
[2025-12-14 07:10:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 10:07:07]  *** The last 200 lines of the pilot log: ***
[2025-12-14 10:07:07] 2025-12-14 15:06:27,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 10:07:07] 2025-12-14 15:06:28,777 | INFO     | time since job start (10489s) is within the limit (174528.0s)
[2025-12-14 10:07:07] 2025-12-14 15:06:30,087 | INFO     | monitor loop #701: job 0:6929301148 is in state 'finished'
[2025-12-14 10:07:07] 2025-12-14 15:06:30,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 10:07:07] 2025-12-14 15:06:30,784 | INFO     | time since job start (10491s) is within the limit (174528.0s)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,593 | INFO     | monitor loop #702: job 0:6929301148 is in state 'finished'
[2025-12-14 10:07:07] 2025-12-14 15:06:32,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,746 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 10:07:07] 2025-12-14 15:06:32,767 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2725.191510416667
[2025-12-14 10:07:07] 2025-12-14 15:06:32,784 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929301148/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,785 | INFO     | extracted standard info from prmon json
[2025-12-14 10:07:07] 2025-12-14 15:06:32,785 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 10:07:07] 2025-12-14 15:06:32,785 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 10:07:07] 2025-12-14 15:06:32,786 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 10:07:07] 2025-12-14 15:06:32,786 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 10:07:07] 2025-12-14 15:06:32,799 | INFO     | fitting pss+swap vs Time
[2025-12-14 10:07:07] 2025-12-14 15:06:32,801 | INFO     | sum of square deviations: 1523406658.0235274
[2025-12-14 10:07:07] 2025-12-14 15:06:32,804 | INFO     | sum of deviations: 52820557310.89413
[2025-12-14 10:07:07] 2025-12-14 15:06:32,805 | INFO     | mean x: 1765719580.552941
[2025-12-14 10:07:07] 2025-12-14 15:06:32,806 | INFO     | mean y: 2481886.511764706
[2025-12-14 10:07:07] 2025-12-14 15:06:32,807 | INFO     | intersect: -61219708398.89013
[2025-12-14 10:07:07] 2025-12-14 15:06:32,808 | INFO     | chi2: 3.8810389814185853
[2025-12-14 10:07:07] 2025-12-14 15:06:32,808 | INFO     | sum of square deviations: 1392904630.5090945
[2025-12-14 10:07:07] 2025-12-14 15:06:32,809 | INFO     | sum of deviations: 61885408421.4546
[2025-12-14 10:07:07] 2025-12-14 15:06:32,809 | INFO     | mean x: 1765719428.0545454
[2025-12-14 10:07:07] 2025-12-14 15:06:32,809 | INFO     | mean y: 2492174.727272727
[2025-12-14 10:07:07] 2025-12-14 15:06:32,809 | INFO     | intersect: -78446717892.80959
[2025-12-14 10:07:07] 2025-12-14 15:06:32,809 | INFO     | chi2: 3.1970180415347356
[2025-12-14 10:07:07] 2025-12-14 15:06:32,809 | INFO     | current chi2=3.1970180415347356 (change=17.624686151279743 %)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,810 | INFO     | right removable region: 164
[2025-12-14 10:07:07] 2025-12-14 15:06:32,810 | INFO     | sum of square deviations: 1392899140.5090945
[2025-12-14 10:07:07] 2025-12-14 15:06:32,811 | INFO     | sum of deviations: 6636209386.018181
[2025-12-14 10:07:07] 2025-12-14 15:06:32,811 | INFO     | mean x: 1765719733.0545454
[2025-12-14 10:07:07] 2025-12-14 15:06:32,811 | INFO     | mean y: 2535649.775757576
[2025-12-14 10:07:07] 2025-12-14 15:06:32,811 | INFO     | intersect: -8409908241.3816185
[2025-12-14 10:07:07] 2025-12-14 15:06:32,811 | INFO     | chi2: 1.0347286294314948
[2025-12-14 10:07:07] 2025-12-14 15:06:32,812 | INFO     | current chi2=1.0347286294314948 (change=73.33887563651102 %)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,813 | INFO     | sum of square deviations: 1270066185.4937472
[2025-12-14 10:07:07] 2025-12-14 15:06:32,813 | INFO     | sum of deviations: -7469467854.75625
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | mean x: 1765719885.55625
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | mean y: 2553095.80625
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | intersect: 10387041775.456423
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | chi2: 0.7792808762500283
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | current chi2=0.7792808762500283 (change=24.687415223237398 %)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | left removable region: 20
[2025-12-14 10:07:07] 2025-12-14 15:06:32,814 | INFO     | sum of square deviations: 925881065.5555586
[2025-12-14 10:07:07] 2025-12-14 15:06:32,815 | INFO     | sum of deviations: -2657888139.333334
[2025-12-14 10:07:07] 2025-12-14 15:06:32,815 | INFO     | mean x: 1765720007.5555556
[2025-12-14 10:07:07] 2025-12-14 15:06:32,815 | INFO     | mean y: 2574034.1666666665
[2025-12-14 10:07:07] 2025-12-14 15:06:32,816 | INFO     | intersect: 5071352779.144536
[2025-12-14 10:07:07] 2025-12-14 15:06:32,816 | INFO     | chi2: 0.0032345159734062604
[2025-12-14 10:07:07] 2025-12-14 15:06:32,816 | INFO     | current memory leak: -2.87 B/s (using 144 data points, chi2=0.00)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | could have reported an average CPU frequency of 2675 MHz (9 samples)
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | ..............................
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . Timing measurements:
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . get job = 0 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . initial setup = 3 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . payload setup = 39 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . stage-in = 0 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . payload execution = 10367 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . stage-out = 1 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,821 | INFO     | . log creation = 0 s
[2025-12-14 10:07:07] 2025-12-14 15:06:32,822 | INFO     | ..............................
[2025-12-14 10:07:07] 2025-12-14 15:06:32,836 | INFO     | time since job start (10493s) is within the limit (174528.0s)
[2025-12-14 10:07:07] 2025-12-14 15:06:33,010 | INFO     | 
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | job summary report
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | --------------------------------------------------
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | PanDA job id: 6929301148
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | task id: 47898763
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | errors: (none)
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | pilot state: finished 
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | transexitcode: 0
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | exeerrorcode: 0
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | exeerrordiag: 
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | exitcode: 0
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | exitmsg: OK
[2025-12-14 10:07:07] 2025-12-14 15:06:33,012 | INFO     | cpuconsumptiontime: 59961 s
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | nevents: 400
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | neventsw: 0
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | pid: 456719
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | pgrp: 456719
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | corecount: 9
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | event service: False
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | sizes: {0: 2283124, 1: 2283809, 2: 2284008, 3: 2284008, 14: 2284036, 25: 2284064, 28: 2284482, 36: 2284510, 10411: 2313531, 10413: 2322585, 10433: 2322787}
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | --------------------------------------------------
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | 
[2025-12-14 10:07:07] 2025-12-14 15:06:33,013 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-14 10:07:07] 2025-12-14 15:06:33,080 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,080 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 10:07:07] 2025-12-14 15:06:33,082 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,082 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 10:07:07] 2025-12-14 15:06:33,082 | INFO     | job 6929301148 has completed (purged errors)
[2025-12-14 10:07:07] 2025-12-14 15:06:33,082 | INFO     | overall cleanup function is called
[2025-12-14 10:07:07] 2025-12-14 15:06:34,099 | INFO     | --- collectZombieJob: --- 10, [456719]
[2025-12-14 10:07:07] 2025-12-14 15:06:34,100 | INFO     | zombie collector waiting for pid 456719
[2025-12-14 10:07:07] 2025-12-14 15:06:34,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 10:07:07] 2025-12-14 15:06:34,100 | INFO     | collected zombie processes
[2025-12-14 10:07:07] 2025-12-14 15:06:34,100 | INFO     | will attempt to kill all subprocesses of pid=456719
[2025-12-14 10:07:07] 2025-12-14 15:06:34,809 | INFO     | process IDs to be killed: [456719] (in reverse order)
[2025-12-14 10:07:07] 2025-12-14 15:06:35,059 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 10:07:07] 2025-12-14 15:06:35,060 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 10:07:07] 2025-12-14 15:06:35,100 | INFO     | did not find any defunct processes belonging to 456719
[2025-12-14 10:07:07] 2025-12-14 15:06:35,135 | INFO     | did not find any defunct processes belonging to 456719
[2025-12-14 10:07:07] 2025-12-14 15:06:35,136 | INFO     | ready for new job
[2025-12-14 10:07:07] 2025-12-14 15:06:35,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 10:07:07] 2025-12-14 15:06:35,142 | INFO     | ***************************************
[2025-12-14 10:07:07] 2025-12-14 15:06:35,142 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 10:07:07] 2025-12-14 15:06:35,142 | INFO     | ***************************************
[2025-12-14 10:07:07] 2025-12-14 15:06:35,142 | INFO     | 
[2025-12-14 10:07:07] 2025-12-14 15:06:35,164 | INFO     | architecture information:
[2025-12-14 10:07:07] 2025-12-14 15:06:35,167 | INFO     | executing command: cat /etc/os-release
[2025-12-14 10:07:07] 2025-12-14 15:06:35,238 | INFO     | cat /etc/os-release:
[2025-12-14 10:07:07] NAME="CentOS Linux"
[2025-12-14 10:07:07] VERSION="7 (Core)"
[2025-12-14 10:07:07] ID="centos"
[2025-12-14 10:07:07] ID_LIKE="rhel fedora"
[2025-12-14 10:07:07] VERSION_ID="7"
[2025-12-14 10:07:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 10:07:07] ANSI_COLOR="0;31"
[2025-12-14 10:07:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 10:07:07] HOME_URL="https://www.centos.org/"
[2025-12-14 10:07:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 10:07:07] 
[2025-12-14 10:07:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 10:07:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 10:07:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 10:07:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 10:07:07] 
[2025-12-14 10:07:07] 2025-12-14 15:06:35,238 | INFO     | ***************************************
[2025-12-14 10:07:07] 2025-12-14 15:06:35,742 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-14 10:07:07] 2025-12-14 15:06:35,787 | INFO     | sufficient remaining disk space (127518375936 B)
[2025-12-14 10:07:07] 2025-12-14 15:06:35,787 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 10:07:07] 2025-12-14 15:06:35,788 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 10:07:07] 2025-12-14 15:06:35,788 | INFO     | update_server=False
[2025-12-14 10:07:07] 2025-12-14 15:06:35,788 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 10:07:07] 2025-12-14 15:06:36,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 10:07:07] 2025-12-14 15:06:36,084 | INFO     | all data control threads have been joined
[2025-12-14 10:07:07] 2025-12-14 15:06:36,102 | INFO     | all job control threads have been joined
[2025-12-14 10:07:07] 2025-12-14 15:06:36,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 10:07:07] 2025-12-14 15:06:36,109 | INFO     | aborting loop
[2025-12-14 10:07:07] 2025-12-14 15:06:36,577 | INFO     | all payload control threads have been joined
[2025-12-14 10:07:07] 2025-12-14 15:06:36,793 | INFO     | [job] retrieve thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:36,998 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,021 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,090 | INFO     | [data] control thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,108 | INFO     | [job] control thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,114 | INFO     | [job] job monitor thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 10:07:07] 2025-12-14 15:06:37,452 | INFO     | [job] validate thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,506 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,583 | INFO     | [payload] control thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,761 | INFO     | [payload] failed_post thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,926 | INFO     | [data] copytool_in thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:37,979 | INFO     | [payload] validate_post thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:38,024 | INFO     | [data] copytool_out thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:38,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 10:07:07] 2025-12-14 15:06:39,032 | INFO     | [job] queue monitor thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:41,182 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:46,238 | INFO     | job.realtimelogging is not enabled
[2025-12-14 10:07:07] 2025-12-14 15:06:47,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 10:07:07] 2025-12-14 15:06:56,760 | INFO     | [monitor] cgroup control has ended
[2025-12-14 10:07:07] 2025-12-14 15:06:58,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473548105536)>', '<ExcThread(monitor, started 140472458663680)>']
[2025-12-14 10:07:07] 2025-12-14 15:07:03,787 | INFO     | all workflow threads have been joined
[2025-12-14 10:07:07] 2025-12-14 15:07:03,793 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 10:07:07] 2025-12-14 15:07:03,793 | INFO     | traces error code: 0
[2025-12-14 10:07:07] 2025-12-14 15:07:03,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 10:07:07] 2025-12-14 15:07:06,501 | INFO     | PID=425624 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 10:07:07] 2025-12-14 15:07:06,502 | INFO     | .. there are 24 such processes running
[2025-12-14 10:07:07] 2025-12-14 15:07:06,502 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 10:07:07] 2025-12-14 15:07:06,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 10:07:07] 2025-12-14 15:07:06,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 10:07:07] 2025-12-14 15:07:06,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 10:07:07] 2025-12-14 15:07:06,503 | INFO     | [monitor] control thread has ended
[2025-12-14 10:07:07] 2025-12-14 15:07:06,717 [wrapper] ==== pilot stdout END ====
[2025-12-14 10:07:07] 2025-12-14 15:07:06,739 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 10:07:07] 2025-12-14 15:07:06,752 [wrapper] pilotpid: 425624
[2025-12-14 10:07:07] 2025-12-14 15:07:06,765 [wrapper] Pilot exit status: 0
[2025-12-14 10:07:07] 2025-12-14 15:07:06,818 [wrapper] pandaids: 6929301148
[2025-12-14 10:07:07] 2025-12-14 15:07:06,992 [wrapper] cleanup supervisor_pilot  814491 425625
[2025-12-14 10:07:07] 2025-12-14 15:07:07,008 [wrapper] Test setup, not cleaning
[2025-12-14 10:07:07] 2025-12-14 15:07:07,011 [wrapper] apfmon messages muted
[2025-12-14 10:07:07] 2025-12-14 15:07:07,014 [wrapper] ==== wrapper stdout END ====
[2025-12-14 10:07:07] 2025-12-14 15:07:07,016 [wrapper] ==== wrapper stderr END ====
[2025-12-14 10:07:07]  *** Error codes and diagnostics ***
[2025-12-14 10:07:07]     "exeErrorCode": 0,
[2025-12-14 10:07:07]     "exeErrorDiag": "",
[2025-12-14 10:07:07]     "pilotErrorCode": 0,
[2025-12-14 10:07:07]     "pilotErrorDiag": "",
[2025-12-14 10:07:07]  *** Listing of results directory ***
[2025-12-14 10:07:07] total 447096
[2025-12-14 10:07:07] -rwx------. 1 boincer umatlas     36322 Dec 13 06:39 runpilot2-wrapper.sh
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 06:43 pilot3.tar.gz
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 06:43 queuedata.json
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas       100 Dec 14 07:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 10:07:07] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 07:10 run_atlas
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas       105 Dec 14 07:10 job.xml
[2025-12-14 10:07:07] -rw-r--r--. 2 boincer umatlas 225979082 Dec 14 07:10 EVNT.47898761._000218.pool.root.1
[2025-12-14 10:07:07] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 07:10 start_atlas.sh
[2025-12-14 10:07:07] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 07:10 shared
[2025-12-14 10:07:07] -rw-r--r--. 2 boincer umatlas    592398 Dec 14 07:10 input.tar.gz
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas         0 Dec 14 07:10 boinc_lockfile
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas      2504 Dec 14 07:10 pandaJob.out
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas        57 Dec 14 07:10 setup.sh.local
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas    991728 Dec 14 07:11 agis_schedconf.cvmfs.json
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas   1516240 Dec 14 07:11 agis_ddmendpoints.agis.ALL.json
[2025-12-14 10:07:07] drwx------. 5 boincer umatlas      4096 Dec 14 07:11 pilot3
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas      6878 Dec 14 10:03 init_data.xml
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas 224264868 Dec 14 10:04 HITS.47898763._003570.pool.root.1
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas       530 Dec 14 10:04 boinc_task_state.xml
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas      1046 Dec 14 10:06 memory_monitor_summary.json
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas    429854 Dec 14 10:06 log.47898763._003570.job.log.tgz.1
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas      7829 Dec 14 10:06 heartbeat.json
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 10:07 boinc_mmap_file
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas        27 Dec 14 10:07 wrapper_checkpoint.txt
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas        95 Dec 14 10:07 pilot_heartbeat.json
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas       822 Dec 14 10:07 pilotlog.txt
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas   1401970 Dec 14 10:07 log.47898763._003570.job.log.1
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas       357 Dec 14 10:07 output.list
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas       620 Dec 14 10:07 runtime_log
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas   1853440 Dec 14 10:07 result.tar.gz
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas      9353 Dec 14 10:07 runtime_log.err
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas       656 Dec 14 10:07 GJ4NDmM9co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoKPKDmFx3HYm.diag
[2025-12-14 10:07:07] -rw-r--r--. 1 boincer umatlas     21410 Dec 14 10:07 stderr.txt
[2025-12-14 10:07:07] HITS file was successfully produced:
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas 224264868 Dec 14 10:04 shared/HITS.pool.root.1
[2025-12-14 10:07:07]  *** Contents of shared directory: ***
[2025-12-14 10:07:07] total 442108
[2025-12-14 10:07:07] -rw-r--r--. 2 boincer umatlas 225979082 Dec 14 07:10 ATLAS.root_0
[2025-12-14 10:07:07] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 07:10 start_atlas.sh
[2025-12-14 10:07:07] -rw-r--r--. 2 boincer umatlas    592398 Dec 14 07:10 input.tar.gz
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas 224264868 Dec 14 10:04 HITS.pool.root.1
[2025-12-14 10:07:07] -rw-------. 1 boincer umatlas   1853440 Dec 14 10:07 result.tar.gz
10:07:09 (416101): run_atlas exited; CPU time 60366.728887
10:07:09 (416101): called boinc_finish(0)

</stderr_txt>
]]>

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