Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:28 (3818866): wrapper (7.7.26015): starting
07:28:28 (3818866): wrapper: running run_atlas (--nthreads 9)
[2025-12-14 07:28:28] Arguments: --nthreads 9
[2025-12-14 07:28:28] Threads: 9
[2025-12-14 07:28:28] Checking for CVMFS
[2025-12-14 07:28:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 07:28:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 07:28:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 07:28:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 07:28:31] 2.13.2.0 6383 60269 248460 153996 1 195 36432379 40960001 9753 16776704 0 75568273 99.734 47678917 37043 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 07:28:31] CVMFS is ok
[2025-12-14 07:28:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 07:28:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 07:28:31] Further information can be found at the LHC@home message board.
[2025-12-14 07:28:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 07:28:31] Checking for apptainer binary...
[2025-12-14 07:28:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 07:28:31] Running /usr/bin/apptainer --version
[2025-12-14 07:28:31] apptainer version 1.4.4-1.el9
[2025-12-14 07:28:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 07:28:32] c-210-37-2.aglt2.org
[2025-12-14 07:28:32] apptainer works
[2025-12-14 07:28:32] Set ATHENA_PROC_NUMBER=9
[2025-12-14 07:28:32] Set ATHENA_CORE_NUMBER=9
[2025-12-14 07:28:32] Starting ATLAS job with PandaID=6929409932
[2025-12-14 07:28:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 14:07:28]  *** The last 200 lines of the pilot log: ***
[2025-12-14 14:07:28] 2025-12-14 19:06:26,270 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 14:07:28] 2025-12-14 19:06:26,286 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2683.18175
[2025-12-14 14:07:28] 2025-12-14 19:06:26,347 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6929409932/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,348 | INFO     | extracted standard info from prmon json
[2025-12-14 14:07:28] 2025-12-14 19:06:26,349 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 14:07:28] 2025-12-14 19:06:26,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 14:07:28] 2025-12-14 19:06:26,366 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 14:07:28] 2025-12-14 19:06:26,367 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 14:07:28] 2025-12-14 19:06:26,426 | INFO     | fitting pss+swap vs Time
[2025-12-14 14:07:28] 2025-12-14 19:06:26,427 | INFO     | sum of square deviations: 18112479007.739582
[2025-12-14 14:07:28] 2025-12-14 19:06:26,515 | INFO     | sum of deviations: -104626600581.4562
[2025-12-14 14:07:28] 2025-12-14 19:06:26,515 | INFO     | mean x: 1765727274.2551546
[2025-12-14 14:07:28] 2025-12-14 19:06:26,516 | INFO     | mean y: 2557185.8530927836
[2025-12-14 14:07:28] 2025-12-14 19:06:26,516 | INFO     | intersect: 10202267682.706446
[2025-12-14 14:07:28] 2025-12-14 19:06:26,516 | INFO     | chi2: 3.4255847772731447
[2025-12-14 14:07:28] 2025-12-14 19:06:26,606 | INFO     | sum of square deviations: 17421313381.37869
[2025-12-14 14:07:28] 2025-12-14 19:06:26,615 | INFO     | sum of deviations: -51555598585.65276
[2025-12-14 14:07:28] 2025-12-14 19:06:26,616 | INFO     | mean x: 1765727121.762402
[2025-12-14 14:07:28] 2025-12-14 19:06:26,616 | INFO     | mean y: 2568806.92689295
[2025-12-14 14:07:28] 2025-12-14 19:06:26,616 | INFO     | intersect: 5227956624.052438
[2025-12-14 14:07:28] 2025-12-14 19:06:26,617 | INFO     | chi2: 1.9117491450662665
[2025-12-14 14:07:28] 2025-12-14 19:06:26,617 | INFO     | current chi2=1.9117491450662665 (change=44.19203524753899 %)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,618 | INFO     | sum of square deviations: 16747961676.476227
[2025-12-14 14:07:28] 2025-12-14 19:06:26,626 | INFO     | sum of deviations: -51050169007.47614
[2025-12-14 14:07:28] 2025-12-14 19:06:26,630 | INFO     | mean x: 1765726969.2698412
[2025-12-14 14:07:28] 2025-12-14 19:06:26,630 | INFO     | mean y: 2568921.396825397
[2025-12-14 14:07:28] 2025-12-14 19:06:26,631 | INFO     | intersect: 5384755837.2466135
[2025-12-14 14:07:28] 2025-12-14 19:06:26,631 | INFO     | chi2: 1.9102968358158758
[2025-12-14 14:07:28] 2025-12-14 19:06:26,631 | INFO     | current chi2=1.9102968358158758 (change=0.07596756374332243 %)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,631 | INFO     | right removable region: 377
[2025-12-14 14:07:28] 2025-12-14 19:06:26,632 | INFO     | sum of square deviations: 17421158074.85117
[2025-12-14 14:07:28] 2025-12-14 19:06:26,664 | INFO     | sum of deviations: -160853157380.99475
[2025-12-14 14:07:28] 2025-12-14 19:06:26,665 | INFO     | mean x: 1765727426.765013
[2025-12-14 14:07:28] 2025-12-14 19:06:26,665 | INFO     | mean y: 2569503.955613577
[2025-12-14 14:07:28] 2025-12-14 19:06:26,665 | INFO     | intersect: 16305896208.70443
[2025-12-14 14:07:28] 2025-12-14 19:06:26,666 | INFO     | chi2: 1.992764438355372
[2025-12-14 14:07:28] 2025-12-14 19:06:26,666 | INFO     | current chi2=1.992764438355372 (change=41.827029020672356 %)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,666 | INFO     | sum of square deviations: 16747651429.38618
[2025-12-14 14:07:28] 2025-12-14 19:06:26,694 | INFO     | sum of deviations: -145735780636.4497
[2025-12-14 14:07:28] 2025-12-14 19:06:26,694 | INFO     | mean x: 1765727579.2751322
[2025-12-14 14:07:28] 2025-12-14 19:06:26,694 | INFO     | mean y: 2566069.994708995
[2025-12-14 14:07:28] 2025-12-14 19:06:26,694 | INFO     | intersect: 15367686859.734089
[2025-12-14 14:07:28] 2025-12-14 19:06:26,715 | INFO     | chi2: 1.9596732516369748
[2025-12-14 14:07:28] 2025-12-14 19:06:26,715 | INFO     | current chi2=1.9596732516369748 (change=1.6605669030157582 %)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,715 | INFO     | left removable region: 20
[2025-12-14 14:07:28] 2025-12-14 19:06:26,716 | INFO     | sum of square deviations: 14108577215.663877
[2025-12-14 14:07:28] 2025-12-14 19:06:26,738 | INFO     | sum of deviations: -51614711707.94112
[2025-12-14 14:07:28] 2025-12-14 19:06:26,739 | INFO     | mean x: 1765727548.8067226
[2025-12-14 14:07:28] 2025-12-14 19:06:26,739 | INFO     | mean y: 2568236.725490196
[2025-12-14 14:07:28] 2025-12-14 19:06:26,739 | INFO     | intersect: 6462292487.67577
[2025-12-14 14:07:28] 2025-12-14 19:06:26,739 | INFO     | chi2: 0.28082683043419027
[2025-12-14 14:07:28] 2025-12-14 19:06:26,740 | INFO     | current memory leak: -3.66 B/s (using 357 data points, chi2=0.28)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | could have reported an average CPU frequency of 2705 MHz (16 samples)
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | ..............................
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . Timing measurements:
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . get job = 0 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . initial setup = 4 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . payload setup = 17 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . stage-in = 0 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . payload execution = 23674 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . stage-out = 6 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | . log creation = 0 s
[2025-12-14 14:07:28] 2025-12-14 19:06:26,741 | INFO     | ..............................
[2025-12-14 14:07:28] 2025-12-14 19:06:27,663 | INFO     | 
[2025-12-14 14:07:28] 2025-12-14 19:06:27,670 | INFO     | job summary report
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | --------------------------------------------------
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | PanDA job id: 6929409932
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | task id: 47886933
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | errors: (none)
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | pilot state: finished 
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | transexitcode: 0
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | exeerrorcode: 0
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | exeerrordiag: 
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | exitcode: 0
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | exitmsg: OK
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | cpuconsumptiontime: 46881 s
[2025-12-14 14:07:28] 2025-12-14 19:06:27,671 | INFO     | nevents: 400
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | neventsw: 0
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | pid: 3832042
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | pgrp: 3832042
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | corecount: 9
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | event service: False
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | sizes: {0: 2283739, 1: 2283823, 2: 2283994, 13: 2284022, 24: 2284078, 35: 2284106, 36: 2284524, 46: 2284552, 23696: 2319370, 23704: 2328368, 23706: 2328424, 23748:
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | --------------------------------------------------
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | 
[2025-12-14 14:07:28] 2025-12-14 19:06:27,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-14 14:07:28] 2025-12-14 19:06:28,160 | INFO     | time since job start (23812s) is within the limit (174528.0s)
[2025-12-14 14:07:28] 2025-12-14 19:06:28,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,202 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,202 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,203 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 14:07:28] 2025-12-14 19:06:28,204 | INFO     | job 6929409932 has completed (purged errors)
[2025-12-14 14:07:28] 2025-12-14 19:06:28,204 | INFO     | overall cleanup function is called
[2025-12-14 14:07:28] 2025-12-14 19:06:29,219 | INFO     | --- collectZombieJob: --- 10, [3832042]
[2025-12-14 14:07:28] 2025-12-14 19:06:29,219 | INFO     | zombie collector waiting for pid 3832042
[2025-12-14 14:07:28] 2025-12-14 19:06:29,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 14:07:28] 2025-12-14 19:06:29,219 | INFO     | collected zombie processes
[2025-12-14 14:07:28] 2025-12-14 19:06:29,219 | INFO     | will attempt to kill all subprocesses of pid=3832042
[2025-12-14 14:07:28] 2025-12-14 19:06:29,704 | INFO     | process IDs to be killed: [3832042] (in reverse order)
[2025-12-14 14:07:28] 2025-12-14 19:06:30,171 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 14:07:28] 2025-12-14 19:06:30,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 14:07:28] 2025-12-14 19:06:30,181 | INFO     | did not find any defunct processes belonging to 3832042
[2025-12-14 14:07:28] 2025-12-14 19:06:30,200 | INFO     | did not find any defunct processes belonging to 3832042
[2025-12-14 14:07:28] 2025-12-14 19:06:30,201 | INFO     | ready for new job
[2025-12-14 14:07:28] 2025-12-14 19:06:30,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 14:07:28] 2025-12-14 19:06:30,208 | INFO     | ***************************************
[2025-12-14 14:07:28] 2025-12-14 19:06:30,209 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 14:07:28] 2025-12-14 19:06:30,209 | INFO     | ***************************************
[2025-12-14 14:07:28] 2025-12-14 19:06:30,209 | INFO     | 
[2025-12-14 14:07:28] 2025-12-14 19:06:30,216 | INFO     | architecture information:
[2025-12-14 14:07:28] 2025-12-14 19:06:30,216 | INFO     | executing command: cat /etc/os-release
[2025-12-14 14:07:28] 2025-12-14 19:06:30,256 | INFO     | cat /etc/os-release:
[2025-12-14 14:07:28] NAME="CentOS Linux"
[2025-12-14 14:07:28] VERSION="7 (Core)"
[2025-12-14 14:07:28] ID="centos"
[2025-12-14 14:07:28] ID_LIKE="rhel fedora"
[2025-12-14 14:07:28] VERSION_ID="7"
[2025-12-14 14:07:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 14:07:28] ANSI_COLOR="0;31"
[2025-12-14 14:07:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 14:07:28] HOME_URL="https://www.centos.org/"
[2025-12-14 14:07:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 14:07:28] 
[2025-12-14 14:07:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 14:07:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 14:07:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 14:07:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 14:07:28] 
[2025-12-14 14:07:28] 2025-12-14 19:06:30,257 | INFO     | ***************************************
[2025-12-14 14:07:28] 2025-12-14 19:06:30,760 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-14 14:07:28] 2025-12-14 19:06:30,869 | INFO     | sufficient remaining disk space (74249666560 B)
[2025-12-14 14:07:28] 2025-12-14 19:06:30,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 14:07:28] 2025-12-14 19:06:30,869 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 14:07:28] 2025-12-14 19:06:30,870 | INFO     | update_server=False
[2025-12-14 14:07:28] 2025-12-14 19:06:30,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 14:07:28] 2025-12-14 19:06:30,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 14:07:28] 2025-12-14 19:06:30,877 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 14:07:28] 2025-12-14 19:06:30,877 | INFO     | aborting loop
[2025-12-14 14:07:28] 2025-12-14 19:06:31,123 | INFO     | all data control threads have been joined
[2025-12-14 14:07:28] 2025-12-14 19:06:31,511 | INFO     | all payload control threads have been joined
[2025-12-14 14:07:28] 2025-12-14 19:06:31,876 | INFO     | [job] retrieve thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:31,883 | INFO     | [job] job monitor thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:32,133 | INFO     | [data] control thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:32,253 | INFO     | [payload] validate_post thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:32,310 | INFO     | all job control threads have been joined
[2025-12-14 14:07:28] 2025-12-14 19:06:32,516 | INFO     | [payload] control thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:32,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 14:07:28] 2025-12-14 19:06:32,679 | INFO     | [payload] failed_post thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:32,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 14:07:28] 2025-12-14 19:06:32,878 | INFO     | [data] copytool_out thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:32,947 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,211 | INFO     | [job] validate thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,340 | INFO     | [job] control thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,373 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,379 | INFO     | [data] copytool_in thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,383 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,396 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:33,684 | INFO     | [job] queue monitor thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:06:36,759 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 14:07:28] 2025-12-14 19:07:00,185 | INFO     | 23818s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-14 14:07:28] 2025-12-14 19:07:04,448 | INFO     | PID=3822857 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 14:07:28] 2025-12-14 19:07:04,448 | INFO     | .. there are 10 such processes running
[2025-12-14 14:07:28] 2025-12-14 19:07:04,449 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 14:07:28] 2025-12-14 19:07:04,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 14:07:28] 2025-12-14 19:07:04,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 14:07:28] 2025-12-14 19:07:20,380 | INFO     | [monitor] cgroup control has ended
[2025-12-14 14:07:28] 2025-12-14 19:07:20,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311623141184)>', '<ExcThread(monitor, started 140310969558784)>']
[2025-12-14 14:07:28] 2025-12-14 19:07:21,566 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 14:07:28] 2025-12-14 19:07:21,566 | INFO     | [monitor] control thread has ended
[2025-12-14 14:07:28] 2025-12-14 19:07:26,001 | INFO     | all workflow threads have been joined
[2025-12-14 14:07:28] 2025-12-14 19:07:26,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 14:07:28] 2025-12-14 19:07:26,002 | INFO     | traces error code: 0
[2025-12-14 14:07:28] 2025-12-14 19:07:26,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 14:07:28] 2025-12-14 19:07:26,653 [wrapper] ==== pilot stdout END ====
[2025-12-14 14:07:28] 2025-12-14 19:07:26,770 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 14:07:28] 2025-12-14 19:07:26,811 [wrapper] pilotpid: 3822857
[2025-12-14 14:07:28] 2025-12-14 19:07:26,843 [wrapper] Pilot exit status: 0
[2025-12-14 14:07:28] 2025-12-14 19:07:26,952 [wrapper] pandaids: 6929409932
[2025-12-14 14:07:28] 2025-12-14 19:07:27,602 [wrapper] cleanup supervisor_pilot  239709 3822858
[2025-12-14 14:07:28] 2025-12-14 19:07:27,622 [wrapper] Test setup, not cleaning
[2025-12-14 14:07:28] 2025-12-14 19:07:27,675 [wrapper] apfmon messages muted
[2025-12-14 14:07:28] 2025-12-14 19:07:27,703 [wrapper] ==== wrapper stdout END ====
[2025-12-14 14:07:28] 2025-12-14 19:07:27,751 [wrapper] ==== wrapper stderr END ====
[2025-12-14 14:07:28]  *** Error codes and diagnostics ***
[2025-12-14 14:07:28]     "exeErrorCode": 0,
[2025-12-14 14:07:28]     "exeErrorDiag": "",
[2025-12-14 14:07:28]     "pilotErrorCode": 0,
[2025-12-14 14:07:28]     "pilotErrorDiag": "",
[2025-12-14 14:07:28]  *** Listing of results directory ***
[2025-12-14 14:07:28] total 345604
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-14 14:07:28] -rwx------. 1 boincer umatlas     36322 Dec 13 23:49 runpilot2-wrapper.sh
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 23:51 queuedata.json
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas       100 Dec 14 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 14:07:28] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 07:28 run_atlas
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas       105 Dec 14 07:28 job.xml
[2025-12-14 14:07:28] -rw-r--r--. 2 boincer umatlas 192035174 Dec 14 07:28 EVNT.47886929._000136.pool.root.1
[2025-12-14 14:07:28] -rw-r--r--. 2 boincer umatlas    592404 Dec 14 07:28 input.tar.gz
[2025-12-14 14:07:28] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 07:28 start_atlas.sh
[2025-12-14 14:07:28] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 07:28 shared
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas         0 Dec 14 07:28 boinc_lockfile
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas      2514 Dec 14 07:28 pandaJob.out
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas        57 Dec 14 07:28 setup.sh.local
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas    991728 Dec 14 07:29 agis_schedconf.cvmfs.json
[2025-12-14 14:07:28] drwx------. 5 boincer umatlas      4096 Dec 14 07:29 pilot3
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas 150714895 Dec 14 14:03 HITS.47886933._002635.pool.root.1
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas       531 Dec 14 14:03 boinc_task_state.xml
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas      6844 Dec 14 14:03 init_data.xml
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas      1055 Dec 14 14:05 memory_monitor_summary.json
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas   1516240 Dec 14 14:05 agis_ddmendpoints.agis.ALL.json
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas    605889 Dec 14 14:05 log.47886933._002635.job.log.tgz.1
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas        95 Dec 14 14:06 pilot_heartbeat.json
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas      7822 Dec 14 14:06 heartbeat.json
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 14:07 boinc_mmap_file
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas        28 Dec 14 14:07 wrapper_checkpoint.txt
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas      4940 Dec 14 14:07 pilotlog.txt
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas   3007941 Dec 14 14:07 log.47886933._002635.job.log.1
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas       357 Dec 14 14:07 output.list
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas       620 Dec 14 14:07 runtime_log
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas   3635200 Dec 14 14:07 result.tar.gz
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas      9353 Dec 14 14:07 runtime_log.err
[2025-12-14 14:07:28] -rw-------. 1 boincer umatlas       658 Dec 14 14:07 RSJNDm8Dto8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXjQKDmtIxq4n.diag
[2025-12-14 14:07:28] -rw-r--r--. 1 boincer umatlas     21236 Dec 14 14:07 stderr.txt
[2025-12-14 14:07:29] HITS file was successfully produced:
[2025-12-14 14:07:29] -rw-------. 1 boincer umatlas 150714895 Dec 14 14:03 shared/HITS.pool.root.1
[2025-12-14 14:07:29]  *** Contents of shared directory: ***
[2025-12-14 14:07:29] total 338872
[2025-12-14 14:07:29] -rw-r--r--. 2 boincer umatlas 192035174 Dec 14 07:28 ATLAS.root_0
[2025-12-14 14:07:29] -rw-r--r--. 2 boincer umatlas    592404 Dec 14 07:28 input.tar.gz
[2025-12-14 14:07:29] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 07:28 start_atlas.sh
[2025-12-14 14:07:29] -rw-------. 1 boincer umatlas 150714895 Dec 14 14:03 HITS.pool.root.1
[2025-12-14 14:07:29] -rw-------. 1 boincer umatlas   3635200 Dec 14 14:07 result.tar.gz
14:07:30 (3818866): run_atlas exited; CPU time 47483.099324
14:07:30 (3818866): called boinc_finish(0)

</stderr_txt>
]]>

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