Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:31:22 (2282): wrapper (7.7.26015): starting
05:31:22 (2282): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 05:31:22] Arguments: --nthreads 12
[2025-12-14 05:31:22] Threads: 12
[2025-12-14 05:31:22] Checking for CVMFS
[2025-12-14 05:31:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 05:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 05:31:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 05:31:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 05:31:23] 2.11.2.0 2914 313485 94240 153992 1 57 15977518 20275201 1 130560 1 138744513 99.963 18315031 15008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 05:31:23] CVMFS is ok
[2025-12-14 05:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 05:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 05:31:23] Further information can be found at the LHC@home message board.
[2025-12-14 05:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 05:31:23] Checking for apptainer binary...
[2025-12-14 05:31:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 05:31:23] Running /usr/bin/apptainer --version
[2025-12-14 05:31:23] apptainer version 1.3.2-1.el7
[2025-12-14 05:31:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 05:31:24] c-205-5.aglt2.org
[2025-12-14 05:31:24] apptainer works
[2025-12-14 05:31:24] Set ATHENA_PROC_NUMBER=12
[2025-12-14 05:31:24] Set ATHENA_CORE_NUMBER=12
[2025-12-14 05:31:24] Starting ATLAS job with PandaID=6929411790
[2025-12-14 05:31:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 06:50:53]  *** The last 200 lines of the pilot log: ***
[2025-12-14 06:50:53]  mtime=0
[2025-12-14 06:50:53]  protocol_id=None
[2025-12-14 06:50:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 06:50:53]  replicas=None
[2025-12-14 06:50:53]  scope=mc23_13p6TeV
[2025-12-14 06:50:53]  status=None
[2025-12-14 06:50:53]  status_code=0
[2025-12-14 06:50:53]  storage_token=
[2025-12-14 06:50:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929411790/log.47886831._006408.job.log.tgz.1
[2025-12-14 06:50:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/62/log.47886831._006408.job.log.tgz.1
[2025-12-14 06:50:53]  workdir=None
[2025-12-14 06:50:53] ]
[2025-12-14 06:50:53] 2025-12-14 11:50:09,467 | INFO     | transferring file log.47886831._006408.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929411790/log.47886831._006408.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 06:50:53] 2025-12-14 11:50:09,467 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929411790/log.47886831._006408.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._006408.job
[2025-12-14 06:50:53] 2025-12-14 11:50:09,491 | INFO     | adding to output.list: log.47886831._006408.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/62/log.47886831._006408.job.log.tg
[2025-12-14 06:50:53] 2025-12-14 11:50:09,492 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 06:50:53] 2025-12-14 11:50:09,492 | INFO     | summary of transferred files:
[2025-12-14 06:50:53] 2025-12-14 11:50:09,492 | INFO     |  -- lfn=log.47886831._006408.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 06:50:53] 2025-12-14 11:50:09,492 | INFO     | stage-out finished correctly
[2025-12-14 06:50:53] 2025-12-14 11:50:09,881 | INFO     | monitor loop #350: job 0:6929411790 is in state 'finished'
[2025-12-14 06:50:53] 2025-12-14 11:50:09,881 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 06:50:53] 2025-12-14 11:50:10,164 | INFO     | time since job start (4710s) is within the limit (174528.0s)
[2025-12-14 06:50:53] 2025-12-14 11:50:11,106 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 06:50:53] 2025-12-14 11:50:11,755 | INFO     | job 6929411790 has state=finished
[2025-12-14 06:50:53] 2025-12-14 11:50:11,755 | INFO     | preparing for final server update for job 6929411790 in state='finished'
[2025-12-14 06:50:53] 2025-12-14 11:50:11,756 | INFO     | this job has now completed (state=finished)
[2025-12-14 06:50:53] 2025-12-14 11:50:11,756 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 06:50:53] 2025-12-14 11:50:11,756 | INFO     | log transfer has been attempted: DONE
[2025-12-14 06:50:53] 2025-12-14 11:50:11,756 | INFO     | job 6929411790 has finished - writing final server update
[2025-12-14 06:50:53] 2025-12-14 11:50:11,757 | INFO     | total number of processed events: 400 (read)
[2025-12-14 06:50:53] 2025-12-14 11:50:11,757 | INFO     | executing command: lscpu
[2025-12-14 06:50:53] 2025-12-14 11:50:11,782 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 06:50:53] 2025-12-14 11:50:12,175 | INFO     | time since job start (4712s) is within the limit (174528.0s)
[2025-12-14 06:50:53] 2025-12-14 11:50:12,385 | INFO     | monitor loop #351: job 0:6929411790 is in state 'finished'
[2025-12-14 06:50:53] 2025-12-14 11:50:12,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 06:50:53] 2025-12-14 11:50:14,181 | INFO     | time since job start (4714s) is within the limit (174528.0s)
[2025-12-14 06:50:53] 2025-12-14 11:50:14,888 | INFO     | monitor loop #352: job 0:6929411790 is in state 'finished'
[2025-12-14 06:50:53] 2025-12-14 11:50:14,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,186 | INFO     | time since job start (4716s) is within the limit (174528.0s)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,596 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 06:50:53] 2025-12-14 11:50:16,599 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.3333333333333
[2025-12-14 06:50:53] 2025-12-14 11:50:16,601 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929411790/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,602 | INFO     | extracted standard info from prmon json
[2025-12-14 06:50:53] 2025-12-14 11:50:16,602 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 06:50:53] 2025-12-14 11:50:16,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 06:50:53] 2025-12-14 11:50:16,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 06:50:53] 2025-12-14 11:50:16,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 06:50:53] 2025-12-14 11:50:16,604 | INFO     | fitting pss+swap vs Time
[2025-12-14 06:50:53] 2025-12-14 11:50:16,604 | INFO     | sum of square deviations: 106336877.5
[2025-12-14 06:50:53] 2025-12-14 11:50:16,605 | INFO     | sum of deviations: -9978791322.999998
[2025-12-14 06:50:53] 2025-12-14 11:50:16,605 | INFO     | mean x: 1765710738.5
[2025-12-14 06:50:53] 2025-12-14 11:50:16,605 | INFO     | mean y: 2790464.9142857143
[2025-12-14 06:50:53] 2025-12-14 11:50:16,605 | INFO     | intersect: 165699389899.77844
[2025-12-14 06:50:53] 2025-12-14 11:50:16,605 | INFO     | chi2: 0.05376202046249662
[2025-12-14 06:50:53] 2025-12-14 11:50:16,606 | INFO     | current memory leak: -93.84 B/s (using 70 data points, chi2=0.05)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,606 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,606 | INFO     | ..............................
[2025-12-14 06:50:53] 2025-12-14 11:50:16,606 | INFO     | . Timing measurements:
[2025-12-14 06:50:53] 2025-12-14 11:50:16,606 | INFO     | . get job = 0 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,606 | INFO     | . initial setup = 2 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,607 | INFO     | . payload setup = 7 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,607 | INFO     | . stage-in = 0 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,607 | INFO     | . payload execution = 4680 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,607 | INFO     | . stage-out = 0 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,607 | INFO     | . log creation = 0 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,607 | INFO     | ..............................
[2025-12-14 06:50:53] 2025-12-14 11:50:16,686 | INFO     | 
[2025-12-14 06:50:53] 2025-12-14 11:50:16,686 | INFO     | job summary report
[2025-12-14 06:50:53] 2025-12-14 11:50:16,687 | INFO     | --------------------------------------------------
[2025-12-14 06:50:53] 2025-12-14 11:50:16,687 | INFO     | PanDA job id: 6929411790
[2025-12-14 06:50:53] 2025-12-14 11:50:16,687 | INFO     | task id: 47886831
[2025-12-14 06:50:53] 2025-12-14 11:50:16,687 | INFO     | errors: (none)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 06:50:53] 2025-12-14 11:50:16,687 | INFO     | pilot state: finished 
[2025-12-14 06:50:53] 2025-12-14 11:50:16,688 | INFO     | transexitcode: 0
[2025-12-14 06:50:53] 2025-12-14 11:50:16,688 | INFO     | exeerrorcode: 0
[2025-12-14 06:50:53] 2025-12-14 11:50:16,688 | INFO     | exeerrordiag: 
[2025-12-14 06:50:53] 2025-12-14 11:50:16,688 | INFO     | exitcode: 0
[2025-12-14 06:50:53] 2025-12-14 11:50:16,688 | INFO     | exitmsg: OK
[2025-12-14 06:50:53] 2025-12-14 11:50:16,688 | INFO     | cpuconsumptiontime: 51447 s
[2025-12-14 06:50:53] 2025-12-14 11:50:16,689 | INFO     | nevents: 400
[2025-12-14 06:50:53] 2025-12-14 11:50:16,689 | INFO     | neventsw: 0
[2025-12-14 06:50:53] 2025-12-14 11:50:16,689 | INFO     | pid: 12451
[2025-12-14 06:50:53] 2025-12-14 11:50:16,689 | INFO     | pgrp: 12451
[2025-12-14 06:50:53] 2025-12-14 11:50:16,689 | INFO     | corecount: 12
[2025-12-14 06:50:53] 2025-12-14 11:50:16,689 | INFO     | event service: False
[2025-12-14 06:50:53] 2025-12-14 11:50:16,690 | INFO     | sizes: {0: 2283989, 5: 2284251, 11: 2284307, 4691: 2310457, 4693: 2319455, 4694: 2319511, 4700: 2319833}
[2025-12-14 06:50:53] 2025-12-14 11:50:16,690 | INFO     | --------------------------------------------------
[2025-12-14 06:50:53] 2025-12-14 11:50:16,690 | INFO     | 
[2025-12-14 06:50:53] 2025-12-14 11:50:16,690 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 06:50:53] 2025-12-14 11:50:16,714 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,714 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,714 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,714 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,714 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 06:50:53] 2025-12-14 11:50:16,717 | INFO     | job 6929411790 has completed (purged errors)
[2025-12-14 06:50:53] 2025-12-14 11:50:16,717 | INFO     | overall cleanup function is called
[2025-12-14 06:50:53] 2025-12-14 11:50:17,725 | INFO     | --- collectZombieJob: --- 10, [12451]
[2025-12-14 06:50:53] 2025-12-14 11:50:17,726 | INFO     | zombie collector waiting for pid 12451
[2025-12-14 06:50:53] 2025-12-14 11:50:17,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 06:50:53] 2025-12-14 11:50:17,726 | INFO     | collected zombie processes
[2025-12-14 06:50:53] 2025-12-14 11:50:17,726 | INFO     | will attempt to kill all subprocesses of pid=12451
[2025-12-14 06:50:53] 2025-12-14 11:50:17,815 | INFO     | process IDs to be killed: [12451] (in reverse order)
[2025-12-14 06:50:53] 2025-12-14 11:50:17,870 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 06:50:53] 2025-12-14 11:50:17,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 06:50:53] 2025-12-14 11:50:17,874 | INFO     | did not find any defunct processes belonging to 12451
[2025-12-14 06:50:53] 2025-12-14 11:50:17,877 | INFO     | did not find any defunct processes belonging to 12451
[2025-12-14 06:50:53] 2025-12-14 11:50:17,877 | INFO     | ready for new job
[2025-12-14 06:50:53] 2025-12-14 11:50:17,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 06:50:53] 2025-12-14 11:50:17,879 | INFO     | ***************************************
[2025-12-14 06:50:53] 2025-12-14 11:50:17,879 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 06:50:53] 2025-12-14 11:50:17,879 | INFO     | ***************************************
[2025-12-14 06:50:53] 2025-12-14 11:50:17,879 | INFO     | 
[2025-12-14 06:50:53] 2025-12-14 11:50:17,880 | INFO     | architecture information:
[2025-12-14 06:50:53] 2025-12-14 11:50:17,880 | INFO     | executing command: cat /etc/os-release
[2025-12-14 06:50:53] 2025-12-14 11:50:17,896 | INFO     | cat /etc/os-release:
[2025-12-14 06:50:53] NAME="CentOS Linux"
[2025-12-14 06:50:53] VERSION="7 (Core)"
[2025-12-14 06:50:53] ID="centos"
[2025-12-14 06:50:53] ID_LIKE="rhel fedora"
[2025-12-14 06:50:53] VERSION_ID="7"
[2025-12-14 06:50:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 06:50:53] ANSI_COLOR="0;31"
[2025-12-14 06:50:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 06:50:53] HOME_URL="https://www.centos.org/"
[2025-12-14 06:50:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 06:50:53] 
[2025-12-14 06:50:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 06:50:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 06:50:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 06:50:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 06:50:53] 
[2025-12-14 06:50:53] 2025-12-14 11:50:17,896 | INFO     | ***************************************
[2025-12-14 06:50:53] 2025-12-14 11:50:18,399 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 06:50:53] 2025-12-14 11:50:18,416 | INFO     | sufficient remaining disk space (29458694144 B)
[2025-12-14 06:50:53] 2025-12-14 11:50:18,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 06:50:53] 2025-12-14 11:50:18,417 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 06:50:53] 2025-12-14 11:50:18,417 | INFO     | update_server=False
[2025-12-14 06:50:53] 2025-12-14 11:50:18,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 06:50:53] 2025-12-14 11:50:18,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 06:50:53] 2025-12-14 11:50:18,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 06:50:53] 2025-12-14 11:50:18,418 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 06:50:53] 2025-12-14 11:50:18,418 | INFO     | aborting loop
[2025-12-14 06:50:53] 2025-12-14 11:50:18,489 | INFO     | all payload control threads have been joined
[2025-12-14 06:50:53] 2025-12-14 11:50:18,714 | INFO     | all job control threads have been joined
[2025-12-14 06:50:53] 2025-12-14 11:50:18,950 | INFO     | all data control threads have been joined
[2025-12-14 06:50:53] 2025-12-14 11:50:19,423 | INFO     | [job] retrieve thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,424 | INFO     | [job] queue monitor thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,424 | INFO     | [job] job monitor thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,494 | INFO     | [payload] control thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,720 | INFO     | [job] control thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,838 | INFO     | [data] copytool_in thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,870 | INFO     | [payload] validate_post thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:19,955 | INFO     | [data] control thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,003 | INFO     | [payload] failed_post thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,149 | INFO     | [job] validate thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,423 | INFO     | [data] copytool_out thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,458 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,636 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,774 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:20,916 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:21,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 06:50:53] 2025-12-14 11:50:25,696 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 06:50:53] 2025-12-14 11:50:47,055 | INFO     | [monitor] cgroup control has ended
[2025-12-14 06:50:53] 2025-12-14 11:50:48,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555719862080)>', '<ExcThread(monitor, started 140555136784128)>']
[2025-12-14 06:50:53] 2025-12-14 11:50:49,362 | INFO     | PID=6025 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 06:50:53] 2025-12-14 11:50:49,363 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 06:50:53] 2025-12-14 11:50:49,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 06:50:53] 2025-12-14 11:50:49,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 06:50:53] 2025-12-14 11:50:49,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 06:50:53] 2025-12-14 11:50:49,363 | INFO     | [monitor] control thread has ended
[2025-12-14 06:50:53] 2025-12-14 11:50:53,033 | INFO     | all workflow threads have been joined
[2025-12-14 06:50:53] 2025-12-14 11:50:53,033 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 06:50:53] 2025-12-14 11:50:53,034 | INFO     | traces error code: 0
[2025-12-14 06:50:53] 2025-12-14 11:50:53,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 06:50:53] 2025-12-14 11:50:53,123 [wrapper] ==== pilot stdout END ====
[2025-12-14 06:50:53] 2025-12-14 11:50:53,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 06:50:53] 2025-12-14 11:50:53,130 [wrapper] pilotpid: 6025
[2025-12-14 06:50:53] 2025-12-14 11:50:53,134 [wrapper] Pilot exit status: 0
[2025-12-14 06:50:53] 2025-12-14 11:50:53,152 [wrapper] pandaids: 6929411790
[2025-12-14 06:50:53] 2025-12-14 11:50:53,192 [wrapper] cleanup supervisor_pilot  7894 6026
[2025-12-14 06:50:53] 2025-12-14 11:50:53,196 [wrapper] Test setup, not cleaning
[2025-12-14 06:50:53] 2025-12-14 11:50:53,200 [wrapper] apfmon messages muted
[2025-12-14 06:50:53] 2025-12-14 11:50:53,204 [wrapper] ==== wrapper stdout END ====
[2025-12-14 06:50:53] 2025-12-14 11:50:53,207 [wrapper] ==== wrapper stderr END ====
[2025-12-14 06:50:53]  *** Error codes and diagnostics ***
[2025-12-14 06:50:53]     "exeErrorCode": 0,
[2025-12-14 06:50:53]     "exeErrorDiag": "",
[2025-12-14 06:50:53]     "pilotErrorCode": 0,
[2025-12-14 06:50:53]     "pilotErrorDiag": "",
[2025-12-14 06:50:53]  *** Listing of results directory ***
[2025-12-14 06:50:53] total 336376
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 23:46 pilot3.tar.gz
[2025-12-14 06:50:53] -rwx------ 1 boincer umatlas     36322 Dec 13 23:47 runpilot2-wrapper.sh
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 23:48 queuedata.json
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas       100 Dec 14 05:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 06:50:53] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 05:31 run_atlas
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas       105 Dec 14 05:31 job.xml
[2025-12-14 06:50:53] -rw-r--r-- 2 boincer umatlas 190232022 Dec 14 05:31 EVNT.47886829._000254.pool.root.1
[2025-12-14 06:50:53] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 05:31 start_atlas.sh
[2025-12-14 06:50:53] drwxrwx--x 2 boincer umatlas      4096 Dec 14 05:31 shared
[2025-12-14 06:50:53] -rw-r--r-- 2 boincer umatlas    592414 Dec 14 05:31 input.tar.gz
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas         0 Dec 14 05:31 boinc_lockfile
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas      2537 Dec 14 05:31 pandaJob.out
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas        57 Dec 14 05:31 setup.sh.local
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas    991720 Dec 14 05:31 agis_schedconf.cvmfs.json
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas   1516240 Dec 14 05:31 agis_ddmendpoints.agis.ALL.json
[2025-12-14 06:50:53] drwx------ 5 boincer umatlas      4096 Dec 14 05:31 pilot3
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 06:47 init_data.xml
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas 148143761 Dec 14 06:49 HITS.47886831._006408.pool.root.1
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas       530 Dec 14 06:49 boinc_task_state.xml
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas      1057 Dec 14 06:50 memory_monitor_summary.json
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas    394307 Dec 14 06:50 log.47886831._006408.job.log.tgz.1
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas      7846 Dec 14 06:50 heartbeat.json
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 06:50 boinc_mmap_file
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas        27 Dec 14 06:50 wrapper_checkpoint.txt
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas        95 Dec 14 06:50 pilot_heartbeat.json
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas      4745 Dec 14 06:50 pilotlog.txt
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas    681301 Dec 14 06:50 log.47886831._006408.job.log.1
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas       357 Dec 14 06:50 output.list
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas       620 Dec 14 06:50 runtime_log
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas   1095680 Dec 14 06:50 result.tar.gz
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas      9339 Dec 14 06:50 runtime_log.err
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas       658 Dec 14 06:50 LrxNDm1Bto8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhoUKDmxNkODm.diag
[2025-12-14 06:50:53] -rw-r--r-- 1 boincer umatlas     21762 Dec 14 06:50 stderr.txt
[2025-12-14 06:50:53] HITS file was successfully produced:
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas 148143761 Dec 14 06:49 shared/HITS.pool.root.1
[2025-12-14 06:50:53]  *** Contents of shared directory: ***
[2025-12-14 06:50:53] total 332120
[2025-12-14 06:50:53] -rw-r--r-- 2 boincer umatlas 190232022 Dec 14 05:31 ATLAS.root_0
[2025-12-14 06:50:53] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 05:31 start_atlas.sh
[2025-12-14 06:50:53] -rw-r--r-- 2 boincer umatlas    592414 Dec 14 05:31 input.tar.gz
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas 148143761 Dec 14 06:49 HITS.pool.root.1
[2025-12-14 06:50:53] -rw------- 1 boincer umatlas   1095680 Dec 14 06:50 result.tar.gz
06:50:55 (2282): run_atlas exited; CPU time 51430.189096
06:50:55 (2282): called boinc_finish(0)

</stderr_txt>
]]>

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