Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:28:54 (14167): wrapper (7.7.26015): starting
16:28:54 (14167): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 16:28:55] Arguments: --nthreads 8
[2025-12-14 16:28:55] Threads: 8
[2025-12-14 16:28:55] Checking for CVMFS
[2025-12-14 16:28:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 16:28:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 16:28:56] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 16:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 16:28:57] 2.11.2.0 29536 114231 126372 154000 2 60 21937422 25165824 4284 130560 12 33139817 99.864 20844137 1964 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 16:28:57] CVMFS is ok
[2025-12-14 16:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 16:28:57] Checking for apptainer binary...
[2025-12-14 16:28:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 16:28:57] Running /usr/bin/apptainer --version
[2025-12-14 16:28:57] apptainer version 1.3.2-1.el7
[2025-12-14 16:28:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 16:29:16] cg-vwn448.simple-grid.lan
[2025-12-14 16:29:16] apptainer works
[2025-12-14 16:29:16] Set ATHENA_PROC_NUMBER=8
[2025-12-14 16:29:16] Set ATHENA_CORE_NUMBER=8
[2025-12-14 16:29:16] Starting ATLAS job with PandaID=6929526630
[2025-12-14 16:29:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 20:39:16]  *** The last 200 lines of the pilot log: ***
[2025-12-14 20:39:16] 2025-12-14 19:38:27,934 | INFO     | .. there are 9 such processes running
[2025-12-14 20:39:16] 2025-12-14 19:38:28,216 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 20:39:16] 2025-12-14 19:38:28,217 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 20:39:16] 2025-12-14 19:38:28,219 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6929526630/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,219 | INFO     | extracted standard info from prmon json
[2025-12-14 20:39:16] 2025-12-14 19:38:28,220 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 20:39:16] 2025-12-14 19:38:28,220 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 20:39:16] 2025-12-14 19:38:28,220 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 20:39:16] 2025-12-14 19:38:28,220 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 20:39:16] 2025-12-14 19:38:28,226 | INFO     | fitting pss+swap vs Time
[2025-12-14 20:39:16] 2025-12-14 19:38:28,226 | INFO     | sum of square deviations: 3972995422.5
[2025-12-14 20:39:16] 2025-12-14 19:38:28,228 | INFO     | sum of deviations: 58048096600.99999
[2025-12-14 20:39:16] 2025-12-14 19:38:28,228 | INFO     | mean x: 1765733939.5
[2025-12-14 20:39:16] 2025-12-14 19:38:28,229 | INFO     | mean y: 2474581.341880342
[2025-12-14 20:39:16] 2025-12-14 19:38:28,229 | INFO     | intersect: -25796068681.83256
[2025-12-14 20:39:16] 2025-12-14 19:38:28,229 | INFO     | chi2: 4.351365177715432
[2025-12-14 20:39:16] 2025-12-14 19:38:28,230 | INFO     | sum of square deviations: 3723716330.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,232 | INFO     | sum of deviations: 56690318157.99999
[2025-12-14 20:39:16] 2025-12-14 19:38:28,232 | INFO     | mean x: 1765733787.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,232 | INFO     | mean y: 2473752.1659388645
[2025-12-14 20:39:16] 2025-12-14 19:38:28,232 | INFO     | intersect: -26879275902.314373
[2025-12-14 20:39:16] 2025-12-14 19:38:28,233 | INFO     | chi2: 4.356907704941094
[2025-12-14 20:39:16] 2025-12-14 19:38:28,233 | INFO     | current chi2=4.356907704941094 (change=-0.12737444455469638 %)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,233 | INFO     | right removable region: 228
[2025-12-14 20:39:16] 2025-12-14 19:38:28,233 | INFO     | sum of square deviations: 3723716330.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,235 | INFO     | sum of deviations: -16540788669.999998
[2025-12-14 20:39:16] 2025-12-14 19:38:28,236 | INFO     | mean x: 1765734092.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,236 | INFO     | mean y: 2520126.8558951966
[2025-12-14 20:39:16] 2025-12-14 19:38:28,236 | INFO     | intersect: 7845930278.12978
[2025-12-14 20:39:16] 2025-12-14 19:38:28,236 | INFO     | chi2: 0.3813168876643444
[2025-12-14 20:39:16] 2025-12-14 19:38:28,236 | INFO     | current chi2=0.3813168876643444 (change=91.23684471215665 %)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,237 | INFO     | sum of square deviations: 3485088600.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,239 | INFO     | sum of deviations: -29828206817.000004
[2025-12-14 20:39:16] 2025-12-14 19:38:28,239 | INFO     | mean x: 1765734244.5
[2025-12-14 20:39:16] 2025-12-14 19:38:28,239 | INFO     | mean y: 2528545.2053571427
[2025-12-14 20:39:16] 2025-12-14 19:38:28,239 | INFO     | intersect: 15115110253.689108
[2025-12-14 20:39:16] 2025-12-14 19:38:28,240 | INFO     | chi2: 0.17668659664952788
[2025-12-14 20:39:16] 2025-12-14 19:38:28,240 | INFO     | current chi2=0.17668659664952788 (change=53.66410396041601 %)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,240 | INFO     | sum of square deviations: 3256879670.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,243 | INFO     | sum of deviations: -27355085952.000004
[2025-12-14 20:39:16] 2025-12-14 19:38:28,243 | INFO     | mean x: 1765734397.0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,243 | INFO     | mean y: 2526856.9589041094
[2025-12-14 20:39:16] 2025-12-14 19:38:28,243 | INFO     | intersect: 14833230196.495514
[2025-12-14 20:39:16] 2025-12-14 19:38:28,244 | INFO     | chi2: 0.16277014597328932
[2025-12-14 20:39:16] 2025-12-14 19:38:28,244 | INFO     | current chi2=0.16277014597328932 (change=7.876347691411458 %)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,244 | INFO     | left removable region: 30
[2025-12-14 20:39:16] 2025-12-14 19:38:28,244 | INFO     | sum of square deviations: 2406926989.5
[2025-12-14 20:39:16] 2025-12-14 19:38:28,246 | INFO     | sum of deviations: -3757022238.4999995
[2025-12-14 20:39:16] 2025-12-14 19:38:28,246 | INFO     | mean x: 1765734671.5
[2025-12-14 20:39:16] 2025-12-14 19:38:28,246 | INFO     | mean y: 2509356.126262626
[2025-12-14 20:39:16] 2025-12-14 19:38:28,246 | INFO     | intersect: 2758681212.2132134
[2025-12-14 20:39:16] 2025-12-14 19:38:28,247 | INFO     | chi2: 0.061426368956987956
[2025-12-14 20:39:16] 2025-12-14 19:38:28,247 | INFO     | current memory leak: -1.56 B/s (using 198 data points, chi2=0.06)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | ..............................
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . Timing measurements:
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . get job = 0 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . initial setup = 10 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . payload setup = 121 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . stage-in = 0 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . payload execution = 14418 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . stage-out = 1 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,248 | INFO     | . log creation = 0 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,249 | INFO     | ..............................
[2025-12-14 20:39:16] 2025-12-14 19:38:28,791 | INFO     | 
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | job summary report
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | --------------------------------------------------
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | PanDA job id: 6929526630
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | task id: 47899042
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | errors: (none)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | pilot state: finished 
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | transexitcode: 0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | exeerrorcode: 0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | exeerrordiag: 
[2025-12-14 20:39:16] 2025-12-14 19:38:28,792 | INFO     | exitcode: 0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | exitmsg: OK
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | cpuconsumptiontime: 54051 s
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | nevents: 400
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | neventsw: 0
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | pid: 24516
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | pgrp: 24516
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | corecount: 8
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | event service: False
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | sizes: {0: 2283709, 1: 2283964, 12: 2283964, 23: 2283992, 34: 2284020, 44: 2284048, 55: 2284204, 66: 2284232, 77: 2284260, 87: 2284316, 91: 2284606, 98: 2284914, 1
[2025-12-14 20:39:16] 2025-12-14 19:38:28,793 | INFO     | --------------------------------------------------
[2025-12-14 20:39:16] 2025-12-14 19:38:28,794 | INFO     | 
[2025-12-14 20:39:16] 2025-12-14 19:38:28,794 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-12-14 20:39:16] 2025-12-14 19:38:28,815 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,817 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 20:39:16] 2025-12-14 19:38:28,818 | INFO     | job 6929526630 has completed (purged errors)
[2025-12-14 20:39:16] 2025-12-14 19:38:28,818 | INFO     | overall cleanup function is called
[2025-12-14 20:39:16] 2025-12-14 19:38:29,831 | INFO     | --- collectZombieJob: --- 10, [24516]
[2025-12-14 20:39:16] 2025-12-14 19:38:29,831 | INFO     | zombie collector waiting for pid 24516
[2025-12-14 20:39:16] 2025-12-14 19:38:29,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 20:39:16] 2025-12-14 19:38:29,831 | INFO     | collected zombie processes
[2025-12-14 20:39:16] 2025-12-14 19:38:29,831 | INFO     | will attempt to kill all subprocesses of pid=24516
[2025-12-14 20:39:16] 2025-12-14 19:38:29,937 | INFO     | process IDs to be killed: [24516] (in reverse order)
[2025-12-14 20:39:16] 2025-12-14 19:38:30,002 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 20:39:16] 2025-12-14 19:38:30,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 20:39:16] 2025-12-14 19:38:30,006 | INFO     | did not find any defunct processes belonging to 24516
[2025-12-14 20:39:16] 2025-12-14 19:38:30,009 | INFO     | did not find any defunct processes belonging to 24516
[2025-12-14 20:39:16] 2025-12-14 19:38:30,009 | INFO     | ready for new job
[2025-12-14 20:39:16] 2025-12-14 19:38:30,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 20:39:16] 2025-12-14 19:38:30,012 | INFO     | ***************************************
[2025-12-14 20:39:16] 2025-12-14 19:38:30,012 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 20:39:16] 2025-12-14 19:38:30,012 | INFO     | ***************************************
[2025-12-14 20:39:16] 2025-12-14 19:38:30,012 | INFO     | 
[2025-12-14 20:39:16] 2025-12-14 19:38:30,013 | INFO     | pilot is running in a VM
[2025-12-14 20:39:16] 2025-12-14 19:38:30,013 | INFO     | architecture information:
[2025-12-14 20:39:16] 2025-12-14 19:38:30,013 | INFO     | executing command: cat /etc/os-release
[2025-12-14 20:39:16] 2025-12-14 19:38:30,033 | INFO     | cat /etc/os-release:
[2025-12-14 20:39:16] NAME="CentOS Linux"
[2025-12-14 20:39:16] VERSION="7 (Core)"
[2025-12-14 20:39:16] ID="centos"
[2025-12-14 20:39:16] ID_LIKE="rhel fedora"
[2025-12-14 20:39:16] VERSION_ID="7"
[2025-12-14 20:39:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 20:39:16] ANSI_COLOR="0;31"
[2025-12-14 20:39:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 20:39:16] HOME_URL="https://www.centos.org/"
[2025-12-14 20:39:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 20:39:16] 
[2025-12-14 20:39:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 20:39:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 20:39:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 20:39:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 20:39:16] 
[2025-12-14 20:39:16] 2025-12-14 19:38:30,033 | INFO     | ***************************************
[2025-12-14 20:39:16] 2025-12-14 19:38:30,535 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-12-14 20:39:16] 2025-12-14 19:38:30,558 | INFO     | sufficient remaining disk space (497533583360 B)
[2025-12-14 20:39:16] 2025-12-14 19:38:30,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 20:39:16] 2025-12-14 19:38:30,558 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 20:39:16] 2025-12-14 19:38:30,558 | INFO     | update_server=False
[2025-12-14 20:39:16] 2025-12-14 19:38:30,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 20:39:16] 2025-12-14 19:38:30,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:39:16] 2025-12-14 19:38:30,560 | INFO     | aborting loop
[2025-12-14 20:39:16] 2025-12-14 19:38:31,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 20:39:16] 2025-12-14 19:38:31,566 | INFO     | [job] job monitor thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:31,568 | INFO     | [job] retrieve thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:31,575 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 20:39:16] 2025-12-14 19:38:31,584 | INFO     | all payload control threads have been joined
[2025-12-14 20:39:16] 2025-12-14 19:38:31,633 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:31,647 | INFO     | all data control threads have been joined
[2025-12-14 20:39:16] 2025-12-14 19:38:31,834 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:31,882 | INFO     | [job] validate thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:31,917 | INFO     | [payload] failed_post thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:32,031 | INFO     | all job control threads have been joined
[2025-12-14 20:39:16] 2025-12-14 19:38:32,421 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:32,583 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:32,590 | INFO     | [payload] control thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:32,649 | INFO     | [data] control thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:32,927 | INFO     | [data] copytool_in thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:32,956 | INFO     | [payload] validate_post thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:33,037 | INFO     | [job] control thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:33,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:39:16] 2025-12-14 19:38:33,582 | INFO     | [data] copytool_out thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:34,394 | INFO     | [job] queue monitor thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:38:35,218 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 20:39:16] 2025-12-14 19:39:00,179 | INFO     | PID=17947 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 20:39:16] 2025-12-14 19:39:00,180 | INFO     | .. there are 9 such processes running
[2025-12-14 20:39:16] 2025-12-14 19:39:00,180 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 20:39:16] 2025-12-14 19:39:00,180 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 20:39:16] 2025-12-14 19:39:00,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 20:39:16] 2025-12-14 19:39:10,035 | INFO     | [monitor] cgroup control has ended
[2025-12-14 20:39:16] 2025-12-14 19:39:11,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191174534976)>', '<ExcThread(monitor, started 140190735652608)>']
[2025-12-14 20:39:16] 2025-12-14 19:39:11,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 20:39:16] 2025-12-14 19:39:11,244 | INFO     | [monitor] control thread has ended
[2025-12-14 20:39:16] 2025-12-14 19:39:16,238 | INFO     | all workflow threads have been joined
[2025-12-14 20:39:16] 2025-12-14 19:39:16,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 20:39:16] 2025-12-14 19:39:16,238 | INFO     | traces error code: 0
[2025-12-14 20:39:16] 2025-12-14 19:39:16,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 20:39:16] 2025-12-14 19:39:16,402 [wrapper] ==== pilot stdout END ====
[2025-12-14 20:39:16] 2025-12-14 19:39:16,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 20:39:16] 2025-12-14 19:39:16,418 [wrapper] pilotpid: 17947
[2025-12-14 20:39:16] 2025-12-14 19:39:16,426 [wrapper] Pilot exit status: 0
[2025-12-14 20:39:16] 2025-12-14 19:39:16,463 [wrapper] pandaids: 6929526630
[2025-12-14 20:39:16] 2025-12-14 19:39:16,510 [wrapper] cleanup supervisor_pilot  2894 17948
[2025-12-14 20:39:16] 2025-12-14 19:39:16,521 [wrapper] Test setup, not cleaning
[2025-12-14 20:39:16] 2025-12-14 19:39:16,524 [wrapper] apfmon messages muted
[2025-12-14 20:39:16] 2025-12-14 19:39:16,527 [wrapper] ==== wrapper stdout END ====
[2025-12-14 20:39:16] 2025-12-14 19:39:16,530 [wrapper] ==== wrapper stderr END ====
[2025-12-14 20:39:16]  *** Error codes and diagnostics ***
[2025-12-14 20:39:16]     "exeErrorCode": 0,
[2025-12-14 20:39:16]     "exeErrorDiag": "",
[2025-12-14 20:39:16]     "pilotErrorCode": 0,
[2025-12-14 20:39:16]     "pilotErrorDiag": "",
[2025-12-14 20:39:16]  *** Listing of results directory ***
[2025-12-14 20:39:16] total 377276
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc    579449 Dec 13 22:19 pilot3.tar.gz
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc      5112 Dec 13 22:19 queuedata.json
[2025-12-14 20:39:16] -rwx------. 1 boinc boinc     36322 Dec 13 22:19 runpilot2-wrapper.sh
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc       100 Dec 14 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 20:39:16] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 16:28 run_atlas
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc       105 Dec 14 16:28 job.xml
[2025-12-14 20:39:16] -rw-r--r--. 2 boinc boinc 200009191 Dec 14 16:28 EVNT.47899040._000069.pool.root.1
[2025-12-14 20:39:16] drwxrwx--x. 2 boinc boinc        68 Dec 14 16:28 shared
[2025-12-14 20:39:16] -rw-r--r--. 2 boinc boinc    592389 Dec 14 16:28 input.tar.gz
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc      6393 Dec 14 16:28 init_data.xml
[2025-12-14 20:39:16] -rw-r--r--. 2 boinc boinc     15847 Dec 14 16:28 start_atlas.sh
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc         0 Dec 14 16:28 boinc_lockfile
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc      2492 Dec 14 16:29 pandaJob.out
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc    991032 Dec 14 16:32 agis_schedconf.cvmfs.json
[2025-12-14 20:39:16] drwx------. 5 boinc boinc      4096 Dec 14 16:32 pilot3
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc 177526720 Dec 14 20:37 HITS.47899042._001219.pool.root.1
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc       531 Dec 14 20:37 boinc_task_state.xml
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc      1017 Dec 14 20:38 memory_monitor_summary.json
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc   1516240 Dec 14 20:38 agis_ddmendpoints.agis.ALL.json
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc    468771 Dec 14 20:38 log.47899042._001219.job.log.tgz.1
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc        95 Dec 14 20:38 pilot_heartbeat.json
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc      7773 Dec 14 20:38 heartbeat.json
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc        28 Dec 14 20:39 wrapper_checkpoint.txt
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc      8192 Dec 14 20:39 boinc_mmap_file
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc      4885 Dec 14 20:39 pilotlog.txt
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc   1977029 Dec 14 20:39 log.47899042._001219.job.log.1
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc       357 Dec 14 20:39 output.list
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc       620 Dec 14 20:39 runtime_log
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc   2467840 Dec 14 20:39 result.tar.gz
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc       656 Dec 14 20:39 YrcNDmcCmo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPHUKDmmX02Lo.diag
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc      8833 Dec 14 20:39 runtime_log.err
[2025-12-14 20:39:16] -rw-r--r--. 1 boinc boinc     20777 Dec 14 20:39 stderr.txt
[2025-12-14 20:39:16] HITS file was successfully produced:
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc 177526720 Dec 14 20:37 shared/HITS.pool.root.1
[2025-12-14 20:39:16]  *** Contents of shared directory: ***
[2025-12-14 20:39:16] total 371700
[2025-12-14 20:39:16] -rw-r--r--. 2 boinc boinc 200009191 Dec 14 16:28 ATLAS.root_0
[2025-12-14 20:39:16] -rw-r--r--. 2 boinc boinc    592389 Dec 14 16:28 input.tar.gz
[2025-12-14 20:39:16] -rw-r--r--. 2 boinc boinc     15847 Dec 14 16:28 start_atlas.sh
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc 177526720 Dec 14 20:37 HITS.pool.root.1
[2025-12-14 20:39:16] -rw-------. 1 boinc boinc   2467840 Dec 14 20:39 result.tar.gz
20:39:18 (14167): run_atlas exited; CPU time 54259.559409
20:39:18 (14167): called boinc_finish(0)

</stderr_txt>
]]>

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