Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:52:02 (2616): wrapper (7.7.26015): starting
14:52:02 (2616): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 14:52:02] Arguments: --nthreads 8
[2025-12-14 14:52:02] Threads: 8
[2025-12-14 14:52:02] Checking for CVMFS
[2025-12-14 14:52:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 14:52:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 14:52:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 14:52:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 14:52:05] 2.11.2.0 14280 311211 141836 153997 3 60 22534821 25165824 4638 130560 10 162133675 99.888 86676384 2855 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 14:52:05] CVMFS is ok
[2025-12-14 14:52:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 14:52:05] Checking for apptainer binary...
[2025-12-14 14:52:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 14:52:05] Running /usr/bin/apptainer --version
[2025-12-14 14:52:05] apptainer version 1.3.2-1.el7
[2025-12-14 14:52:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 14:52:10] cg-vwn302.simple-grid.lan
[2025-12-14 14:52:10] apptainer works
[2025-12-14 14:52:10] Set ATHENA_PROC_NUMBER=8
[2025-12-14 14:52:10] Set ATHENA_CORE_NUMBER=8
[2025-12-14 14:52:10] Starting ATLAS job with PandaID=6929526463
[2025-12-14 14:52:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 19:05:15]  *** The last 200 lines of the pilot log: ***
[2025-12-14 19:05:15] 2025-12-14 18:04:03,714 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 19:05:15] 2025-12-14 18:04:03,715 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-14 19:05:15] 2025-12-14 18:04:03,717 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6929526463/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,717 | INFO     | extracted standard info from prmon json
[2025-12-14 19:05:15] 2025-12-14 18:04:03,718 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 19:05:15] 2025-12-14 18:04:03,718 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 19:05:15] 2025-12-14 18:04:03,718 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 19:05:15] 2025-12-14 18:04:03,718 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 19:05:15] 2025-12-14 18:04:03,723 | INFO     | fitting pss+swap vs Time
[2025-12-14 19:05:15] 2025-12-14 18:04:03,724 | INFO     | sum of square deviations: 4024149870.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,726 | INFO     | sum of deviations: 96709568848.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,726 | INFO     | mean x: 1765728180.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,726 | INFO     | mean y: 2425635.9574468085
[2025-12-14 19:05:15] 2025-12-14 18:04:03,726 | INFO     | intersect: -42432080162.04946
[2025-12-14 19:05:15] 2025-12-14 18:04:03,727 | INFO     | chi2: 5.687130316014206
[2025-12-14 19:05:15] 2025-12-14 18:04:03,727 | INFO     | sum of square deviations: 3772712597.5
[2025-12-14 19:05:15] 2025-12-14 18:04:03,732 | INFO     | sum of deviations: 109814814704.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,733 | INFO     | mean x: 1765728027.5
[2025-12-14 19:05:15] 2025-12-14 18:04:03,733 | INFO     | mean y: 2433421.3739130436
[2025-12-14 19:05:15] 2025-12-14 18:04:03,733 | INFO     | intersect: -51393767891.724365
[2025-12-14 19:05:15] 2025-12-14 18:04:03,733 | INFO     | chi2: 4.950934092161492
[2025-12-14 19:05:15] 2025-12-14 18:04:03,734 | INFO     | current chi2=4.950934092161492 (change=12.9449508441838 %)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,734 | INFO     | right removable region: 229
[2025-12-14 19:05:15] 2025-12-14 18:04:03,734 | INFO     | sum of square deviations: 3772712597.5
[2025-12-14 19:05:15] 2025-12-14 18:04:03,736 | INFO     | sum of deviations: 19704984055.499996
[2025-12-14 19:05:15] 2025-12-14 18:04:03,736 | INFO     | mean x: 1765728332.5
[2025-12-14 19:05:15] 2025-12-14 18:04:03,736 | INFO     | mean y: 2472288.3695652173
[2025-12-14 19:05:15] 2025-12-14 18:04:03,736 | INFO     | intersect: -9219976477.35757
[2025-12-14 19:05:15] 2025-12-14 18:04:03,737 | INFO     | chi2: 1.4516723070119382
[2025-12-14 19:05:15] 2025-12-14 18:04:03,737 | INFO     | current chi2=1.4516723070119382 (change=74.47443215914676 %)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,737 | INFO     | sum of square deviations: 3531973200.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,739 | INFO     | sum of deviations: -5383165149.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,739 | INFO     | mean x: 1765728485.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,739 | INFO     | mean y: 2488035.5244444446
[2025-12-14 19:05:15] 2025-12-14 18:04:03,740 | INFO     | intersect: 2693677210.756173
[2025-12-14 19:05:15] 2025-12-14 18:04:03,740 | INFO     | chi2: 0.797859468689125
[2025-12-14 19:05:15] 2025-12-14 18:04:03,740 | INFO     | current chi2=0.797859468689125 (change=45.03859687649441 %)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,740 | INFO     | sum of square deviations: 3301699115.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,742 | INFO     | sum of deviations: -7767080590.000001
[2025-12-14 19:05:15] 2025-12-14 18:04:03,742 | INFO     | mean x: 1765728637.5
[2025-12-14 19:05:15] 2025-12-14 18:04:03,742 | INFO     | mean y: 2489614.5727272728
[2025-12-14 19:05:15] 2025-12-14 18:04:03,743 | INFO     | intersect: 4156277149.3685493
[2025-12-14 19:05:15] 2025-12-14 18:04:03,743 | INFO     | chi2: 0.7944780925982609
[2025-12-14 19:05:15] 2025-12-14 18:04:03,743 | INFO     | current chi2=0.7944780925982609 (change=0.42380597380385326 %)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,743 | INFO     | left removable region: 30
[2025-12-14 19:05:15] 2025-12-14 18:04:03,744 | INFO     | sum of square deviations: 2443580700.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,745 | INFO     | sum of deviations: 3068931960.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,745 | INFO     | mean x: 1765728912.0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,745 | INFO     | mean y: 2502046.0904522613
[2025-12-14 19:05:15] 2025-12-14 18:04:03,745 | INFO     | intersect: -2215105046.1299224
[2025-12-14 19:05:15] 2025-12-14 18:04:03,746 | INFO     | chi2: 0.00030100355028794384
[2025-12-14 19:05:15] 2025-12-14 18:04:03,746 | INFO     | current memory leak: 1.26 B/s (using 199 data points, chi2=0.00)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | ..............................
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | . Timing measurements:
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | . get job = 0 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | . initial setup = 7 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | . payload setup = 150 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | . stage-in = 0 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,747 | INFO     | . payload execution = 14460 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,748 | INFO     | . stage-out = 3 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,748 | INFO     | . log creation = 1 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,748 | INFO     | ..............................
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | 
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | job summary report
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | --------------------------------------------------
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | PanDA job id: 6929526463
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | task id: 47899042
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | errors: (none)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | pilot state: finished 
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | transexitcode: 0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | exeerrorcode: 0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | exeerrordiag: 
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | exitcode: 0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | exitmsg: OK
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | cpuconsumptiontime: 54627 s
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | nevents: 400
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | neventsw: 0
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | pid: 12961
[2025-12-14 19:05:15] 2025-12-14 18:04:03,891 | INFO     | pgrp: 12961
[2025-12-14 19:05:15] 2025-12-14 18:04:03,892 | INFO     | corecount: 8
[2025-12-14 19:05:15] 2025-12-14 18:04:03,892 | INFO     | event service: False
[2025-12-14 19:05:15] 2025-12-14 18:04:03,892 | INFO     | sizes: {0: 2283762, 1: 2283961, 12: 2283961, 23: 2283989, 34: 2284017, 44: 2284045, 55: 2284201, 66: 2284229, 77: 2284257, 87: 2284313, 96: 2284603, 98: 2284911, 1
[2025-12-14 19:05:15] 2025-12-14 18:04:03,892 | INFO     | --------------------------------------------------
[2025-12-14 19:05:15] 2025-12-14 18:04:03,892 | INFO     | 
[2025-12-14 19:05:15] 2025-12-14 18:04:03,892 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-12-14 19:05:15] 2025-12-14 18:04:03,921 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,921 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,921 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,921 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 19:05:15] 2025-12-14 18:04:03,923 | INFO     | job 6929526463 has completed (purged errors)
[2025-12-14 19:05:15] 2025-12-14 18:04:03,923 | INFO     | overall cleanup function is called
[2025-12-14 19:05:15] 2025-12-14 18:04:04,932 | INFO     | --- collectZombieJob: --- 10, [12961]
[2025-12-14 19:05:15] 2025-12-14 18:04:04,933 | INFO     | zombie collector waiting for pid 12961
[2025-12-14 19:05:15] 2025-12-14 18:04:04,933 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 19:05:15] 2025-12-14 18:04:04,933 | INFO     | collected zombie processes
[2025-12-14 19:05:15] 2025-12-14 18:04:04,933 | INFO     | will attempt to kill all subprocesses of pid=12961
[2025-12-14 19:05:15] 2025-12-14 18:04:05,061 | INFO     | process IDs to be killed: [12961] (in reverse order)
[2025-12-14 19:05:15] 2025-12-14 18:04:05,922 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 19:05:15] 2025-12-14 18:04:05,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 19:05:15] 2025-12-14 18:04:05,926 | INFO     | did not find any defunct processes belonging to 12961
[2025-12-14 19:05:15] 2025-12-14 18:04:05,929 | INFO     | did not find any defunct processes belonging to 12961
[2025-12-14 19:05:15] 2025-12-14 18:04:05,929 | INFO     | ready for new job
[2025-12-14 19:05:15] 2025-12-14 18:04:05,929 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 19:05:15] 2025-12-14 18:04:05,931 | INFO     | ***************************************
[2025-12-14 19:05:15] 2025-12-14 18:04:05,932 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 19:05:15] 2025-12-14 18:04:05,932 | INFO     | ***************************************
[2025-12-14 19:05:15] 2025-12-14 18:04:05,932 | INFO     | 
[2025-12-14 19:05:15] 2025-12-14 18:04:05,932 | INFO     | pilot is running in a VM
[2025-12-14 19:05:15] 2025-12-14 18:04:05,933 | INFO     | architecture information:
[2025-12-14 19:05:15] 2025-12-14 18:04:05,943 | INFO     | executing command: cat /etc/os-release
[2025-12-14 19:05:15] 2025-12-14 18:04:06,278 | INFO     | cat /etc/os-release:
[2025-12-14 19:05:15] NAME="CentOS Linux"
[2025-12-14 19:05:15] VERSION="7 (Core)"
[2025-12-14 19:05:15] ID="centos"
[2025-12-14 19:05:15] ID_LIKE="rhel fedora"
[2025-12-14 19:05:15] VERSION_ID="7"
[2025-12-14 19:05:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 19:05:15] ANSI_COLOR="0;31"
[2025-12-14 19:05:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 19:05:15] HOME_URL="https://www.centos.org/"
[2025-12-14 19:05:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 19:05:15] 
[2025-12-14 19:05:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 19:05:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 19:05:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 19:05:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 19:05:15] 
[2025-12-14 19:05:15] 2025-12-14 18:04:06,278 | INFO     | ***************************************
[2025-12-14 19:05:15] 2025-12-14 18:04:06,782 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-12-14 19:05:15] 2025-12-14 18:04:07,077 | INFO     | sufficient remaining disk space (496939040768 B)
[2025-12-14 19:05:15] 2025-12-14 18:04:07,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 19:05:15] 2025-12-14 18:04:07,078 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 19:05:15] 2025-12-14 18:04:07,078 | INFO     | update_server=False
[2025-12-14 19:05:15] 2025-12-14 18:04:07,078 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 19:05:15] 2025-12-14 18:04:07,078 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 19:05:15] 2025-12-14 18:04:07,221 | INFO     | all data control threads have been joined
[2025-12-14 19:05:15] 2025-12-14 18:04:07,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:05:15] 2025-12-14 18:04:07,620 | INFO     | aborting loop
[2025-12-14 19:05:15] 2025-12-14 18:04:07,958 | INFO     | all job control threads have been joined
[2025-12-14 19:05:15] 2025-12-14 18:04:08,083 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 19:05:15] 2025-12-14 18:04:08,084 | INFO     | [job] retrieve thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,161 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,219 | INFO     | all payload control threads have been joined
[2025-12-14 19:05:15] 2025-12-14 18:04:08,227 | INFO     | [data] control thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,422 | INFO     | [payload] validate_post thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,626 | INFO     | [job] job monitor thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,812 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,838 | INFO     | [data] copytool_in thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:08,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:05:15] 2025-12-14 18:04:08,964 | INFO     | [job] control thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:09,033 | INFO     | [job] validate thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:09,125 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:09,216 | INFO     | [payload] failed_post thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:09,225 | INFO     | [payload] control thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:09,908 | INFO     | [job] queue monitor thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:10,090 | INFO     | [data] copytool_out thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:11,088 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:17,857 | INFO     | job.realtimelogging is not enabled
[2025-12-14 19:05:15] 2025-12-14 18:04:18,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 19:05:15] 2025-12-14 18:04:35,926 | INFO     | PID=6385 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 19:05:15] 2025-12-14 18:04:35,927 | INFO     | .. there are 9 such processes running
[2025-12-14 19:05:15] 2025-12-14 18:04:35,928 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 19:05:15] 2025-12-14 18:04:35,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 19:05:15] 2025-12-14 18:04:35,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 19:05:15] 2025-12-14 18:05:04,060 | INFO     | [monitor] cgroup control has ended
[2025-12-14 19:05:15] 2025-12-14 18:05:05,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140009653724992)>', '<ExcThread(monitor, started 140009222960896)>']
[2025-12-14 19:05:15] 2025-12-14 18:05:06,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 19:05:15] 2025-12-14 18:05:06,109 | INFO     | [monitor] control thread has ended
[2025-12-14 19:05:15] 2025-12-14 18:05:10,311 | INFO     | all workflow threads have been joined
[2025-12-14 19:05:15] 2025-12-14 18:05:10,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 19:05:15] 2025-12-14 18:05:10,312 | INFO     | traces error code: 0
[2025-12-14 19:05:15] 2025-12-14 18:05:10,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 19:05:15] 2025-12-14 18:05:10,544 [wrapper] ==== pilot stdout END ====
[2025-12-14 19:05:15] 2025-12-14 18:05:10,600 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 19:05:15] 2025-12-14 18:05:10,732 [wrapper] pilotpid: 6385
[2025-12-14 19:05:15] 2025-12-14 18:05:10,868 [wrapper] Pilot exit status: 0
[2025-12-14 19:05:15] 2025-12-14 18:05:11,380 [wrapper] pandaids: 6929526463
[2025-12-14 19:05:15] 2025-12-14 18:05:12,727 [wrapper] cleanup supervisor_pilot  8412 6386
[2025-12-14 19:05:15] 2025-12-14 18:05:12,872 [wrapper] Test setup, not cleaning
[2025-12-14 19:05:15] 2025-12-14 18:05:12,993 [wrapper] apfmon messages muted
[2025-12-14 19:05:15] 2025-12-14 18:05:13,106 [wrapper] ==== wrapper stdout END ====
[2025-12-14 19:05:15] 2025-12-14 18:05:13,199 [wrapper] ==== wrapper stderr END ====
[2025-12-14 19:05:15]  *** Error codes and diagnostics ***
[2025-12-14 19:05:15]     "exeErrorCode": 0,
[2025-12-14 19:05:15]     "exeErrorDiag": "",
[2025-12-14 19:05:15]     "pilotErrorCode": 0,
[2025-12-14 19:05:15]     "pilotErrorDiag": "",
[2025-12-14 19:05:15]  *** Listing of results directory ***
[2025-12-14 19:05:15] total 376936
[2025-12-14 19:05:15] -rwx------. 1 boinc boinc     36322 Dec 13 22:19 runpilot2-wrapper.sh
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc    579449 Dec 13 22:19 pilot3.tar.gz
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc      5112 Dec 13 22:19 queuedata.json
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc       100 Dec 14 14:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 19:05:15] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 14:52 run_atlas
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc       105 Dec 14 14:52 job.xml
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc      6391 Dec 14 14:52 init_data.xml
[2025-12-14 19:05:15] -rw-r--r--. 2 boinc boinc 195141923 Dec 14 14:52 EVNT.47899040._000063.pool.root.1
[2025-12-14 19:05:15] -rw-r--r--. 2 boinc boinc     15847 Dec 14 14:52 start_atlas.sh
[2025-12-14 19:05:15] drwxrwx--x. 2 boinc boinc        68 Dec 14 14:52 shared
[2025-12-14 19:05:15] -rw-r--r--. 2 boinc boinc    592380 Dec 14 14:52 input.tar.gz
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc         0 Dec 14 14:52 boinc_lockfile
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc      2491 Dec 14 14:52 pandaJob.out
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc    991736 Dec 14 14:55 agis_schedconf.cvmfs.json
[2025-12-14 19:05:15] drwx------. 5 boinc boinc      4096 Dec 14 14:55 pilot3
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc 182055023 Dec 14 19:01 HITS.47899042._001052.pool.root.1
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc       531 Dec 14 19:01 boinc_task_state.xml
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc      1014 Dec 14 19:02 memory_monitor_summary.json
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc   1516240 Dec 14 19:02 agis_ddmendpoints.agis.ALL.json
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc    448474 Dec 14 19:02 log.47899042._001052.job.log.tgz.1
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc      7770 Dec 14 19:04 heartbeat.json
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc        95 Dec 14 19:04 pilot_heartbeat.json
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc      4955 Dec 14 19:05 pilotlog.txt
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc   1994594 Dec 14 19:05 log.47899042._001052.job.log.1
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc      8192 Dec 14 19:05 boinc_mmap_file
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc        28 Dec 14 19:05 wrapper_checkpoint.txt
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc       357 Dec 14 19:05 output.list
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc       620 Dec 14 19:05 runtime_log
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc   2457600 Dec 14 19:05 result.tar.gz
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc      8817 Dec 14 19:05 runtime_log.err
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc       656 Dec 14 19:05 DKTKDmUCmo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpFUKDmMRTVhn.diag
[2025-12-14 19:05:15] -rw-r--r--. 1 boinc boinc     20750 Dec 14 19:05 stderr.txt
[2025-12-14 19:05:15] HITS file was successfully produced:
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc 182055023 Dec 14 19:01 shared/HITS.pool.root.1
[2025-12-14 19:05:15]  *** Contents of shared directory: ***
[2025-12-14 19:05:15] total 371360
[2025-12-14 19:05:15] -rw-r--r--. 2 boinc boinc 195141923 Dec 14 14:52 ATLAS.root_0
[2025-12-14 19:05:15] -rw-r--r--. 2 boinc boinc     15847 Dec 14 14:52 start_atlas.sh
[2025-12-14 19:05:15] -rw-r--r--. 2 boinc boinc    592380 Dec 14 14:52 input.tar.gz
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc 182055023 Dec 14 19:01 HITS.pool.root.1
[2025-12-14 19:05:15] -rw-------. 1 boinc boinc   2457600 Dec 14 19:05 result.tar.gz
19:05:16 (2616): run_atlas exited; CPU time 54841.157833
19:05:16 (2616): called boinc_finish(0)

</stderr_txt>
]]>

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