Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:48:36 (5417): wrapper (7.7.26015): starting
14:48:36 (5417): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 14:48:36] Arguments: --nthreads 8
[2025-12-14 14:48:36] Threads: 8
[2025-12-14 14:48:36] Checking for CVMFS
[2025-12-14 14:48:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 14:48:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 14:48:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 14:48:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 14:48:38] 2.11.2.0 24289 311202 143256 153997 3 254 24597313 25165824 3768 130560 11 150309450 99.880 79557434 2856 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 14:48:38] CVMFS is ok
[2025-12-14 14:48:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 14:48:38] Checking for apptainer binary...
[2025-12-14 14:48:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 14:48:38] Running /usr/bin/apptainer --version
[2025-12-14 14:48:38] apptainer version 1.3.2-1.el7
[2025-12-14 14:48:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 14:48:44] cg-vwn388.simple-grid.lan
[2025-12-14 14:48:44] apptainer works
[2025-12-14 14:48:44] Set ATHENA_PROC_NUMBER=8
[2025-12-14 14:48:44] Set ATHENA_CORE_NUMBER=8
[2025-12-14 14:48:44] Starting ATLAS job with PandaID=6929308251
[2025-12-14 14:48:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 20:49:39]  *** The last 200 lines of the pilot log: ***
[2025-12-14 20:49:39] 2025-12-14 19:48:34,069 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 20:49:39] 2025-12-14 19:48:34,070 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 20:49:39] 2025-12-14 19:48:34,072 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6929308251/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,073 | INFO     | extracted standard info from prmon json
[2025-12-14 20:49:39] 2025-12-14 19:48:34,073 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 20:49:39] 2025-12-14 19:48:34,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 20:49:39] 2025-12-14 19:48:34,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 20:49:39] 2025-12-14 19:48:34,074 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 20:49:39] 2025-12-14 19:48:34,081 | INFO     | fitting pss+swap vs Time
[2025-12-14 20:49:39] 2025-12-14 19:48:34,081 | INFO     | sum of square deviations: 12403750705.5
[2025-12-14 20:49:39] 2025-12-14 19:48:34,085 | INFO     | sum of deviations: 107797436550.99997
[2025-12-14 20:49:39] 2025-12-14 19:48:34,085 | INFO     | mean x: 1765731212.5
[2025-12-14 20:49:39] 2025-12-14 19:48:34,085 | INFO     | mean y: 2440776.2573099416
[2025-12-14 20:49:39] 2025-12-14 19:48:34,086 | INFO     | intersect: -15343022290.909054
[2025-12-14 20:49:39] 2025-12-14 19:48:34,086 | INFO     | chi2: 5.813391109354833
[2025-12-14 20:49:39] 2025-12-14 19:48:34,087 | INFO     | sum of square deviations: 11867638328.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,091 | INFO     | sum of deviations: 151718554009.99997
[2025-12-14 20:49:39] 2025-12-14 19:48:34,091 | INFO     | mean x: 1765731060.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,091 | INFO     | mean y: 2453154.522255193
[2025-12-14 20:49:39] 2025-12-14 19:48:34,091 | INFO     | intersect: -22571049322.51957
[2025-12-14 20:49:39] 2025-12-14 19:48:34,092 | INFO     | chi2: 4.245128370825792
[2025-12-14 20:49:39] 2025-12-14 19:48:34,092 | INFO     | current chi2=4.245128370825792 (change=26.97672853982615 %)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,093 | INFO     | sum of square deviations: 11347200663.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,096 | INFO     | sum of deviations: 149106059033.50003
[2025-12-14 20:49:39] 2025-12-14 19:48:34,096 | INFO     | mean x: 1765730907.5
[2025-12-14 20:49:39] 2025-12-14 19:48:34,097 | INFO     | mean y: 2452388.948795181
[2025-12-14 20:49:39] 2025-12-14 19:48:34,097 | INFO     | intersect: -23199849636.911713
[2025-12-14 20:49:39] 2025-12-14 19:48:34,097 | INFO     | chi2: 4.2472370416416245
[2025-12-14 20:49:39] 2025-12-14 19:48:34,097 | INFO     | current chi2=4.2472370416416245 (change=-0.04967272203885527 %)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,098 | INFO     | right removable region: 331
[2025-12-14 20:49:39] 2025-12-14 19:48:34,098 | INFO     | sum of square deviations: 11867638328.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,102 | INFO     | sum of deviations: -1390933162.9999962
[2025-12-14 20:49:39] 2025-12-14 19:48:34,102 | INFO     | mean x: 1765731365.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,102 | INFO     | mean y: 2471797.0979228485
[2025-12-14 20:49:39] 2025-12-14 19:48:34,102 | INFO     | intersect: 209422349.90783915
[2025-12-14 20:49:39] 2025-12-14 19:48:34,103 | INFO     | chi2: 1.9276261714758534
[2025-12-14 20:49:39] 2025-12-14 19:48:34,103 | INFO     | current chi2=1.9276261714758534 (change=66.84162246758278 %)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,103 | INFO     | sum of square deviations: 11347200663.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,107 | INFO     | sum of deviations: -22703796759.500008
[2025-12-14 20:49:39] 2025-12-14 19:48:34,107 | INFO     | mean x: 1765731517.5
[2025-12-14 20:49:39] 2025-12-14 19:48:34,107 | INFO     | mean y: 2477995.629518072
[2025-12-14 20:49:39] 2025-12-14 19:48:34,107 | INFO     | intersect: 3535403048.7557716
[2025-12-14 20:49:39] 2025-12-14 19:48:34,108 | INFO     | chi2: 1.6610595858937285
[2025-12-14 20:49:39] 2025-12-14 19:48:34,108 | INFO     | current chi2=1.6610595858937285 (change=13.82874903477954 %)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,108 | INFO     | left removable region: 20
[2025-12-14 20:49:39] 2025-12-14 19:48:34,109 | INFO     | sum of square deviations: 9327281860.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,112 | INFO     | sum of deviations: 19554415284.999996
[2025-12-14 20:49:39] 2025-12-14 19:48:34,112 | INFO     | mean x: 1765731487.0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,112 | INFO     | mean y: 2491582.395498392
[2025-12-14 20:49:39] 2025-12-14 19:48:34,113 | INFO     | intersect: -3699320724.4321814
[2025-12-14 20:49:39] 2025-12-14 19:48:34,113 | INFO     | chi2: 0.0035431007933798926
[2025-12-14 20:49:39] 2025-12-14 19:48:34,113 | INFO     | current memory leak: 2.10 B/s (using 311 data points, chi2=0.00)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,114 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,114 | INFO     | ..............................
[2025-12-14 20:49:39] 2025-12-14 19:48:34,114 | INFO     | . Timing measurements:
[2025-12-14 20:49:39] 2025-12-14 19:48:34,114 | INFO     | . get job = 0 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,114 | INFO     | . initial setup = 7 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,115 | INFO     | . payload setup = 139 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,115 | INFO     | . stage-in = 0 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,115 | INFO     | . payload execution = 20979 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,115 | INFO     | . stage-out = 3 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,115 | INFO     | . log creation = 1 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,115 | INFO     | ..............................
[2025-12-14 20:49:39] 2025-12-14 19:48:34,164 | INFO     | time since job start (21402s) is within the limit (174528.0s)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,282 | INFO     | 
[2025-12-14 20:49:39] 2025-12-14 19:48:34,282 | INFO     | job summary report
[2025-12-14 20:49:39] 2025-12-14 19:48:34,282 | INFO     | --------------------------------------------------
[2025-12-14 20:49:39] 2025-12-14 19:48:34,282 | INFO     | PanDA job id: 6929308251
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | task id: 47898836
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | errors: (none)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | pilot state: finished 
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | transexitcode: 0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | exeerrorcode: 0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | exeerrordiag: 
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | exitcode: 0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | exitmsg: OK
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | cpuconsumptiontime: 77920 s
[2025-12-14 20:49:39] 2025-12-14 19:48:34,283 | INFO     | nevents: 400
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | neventsw: 0
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | pid: 15744
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | pgrp: 15744
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | corecount: 8
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | event service: False
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | sizes: {0: 2283780, 1: 2284035, 2: 2284035, 12: 2284063, 23: 2284091, 34: 2284119, 44: 2284275, 55: 2284303, 66: 2284331, 77: 2284359, 87: 2284985, 98: 2284985, 21
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | --------------------------------------------------
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | 
[2025-12-14 20:49:39] 2025-12-14 19:48:34,284 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-12-14 20:49:39] 2025-12-14 19:48:34,521 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,524 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 20:49:39] 2025-12-14 19:48:34,524 | INFO     | job 6929308251 has completed (purged errors)
[2025-12-14 20:49:39] 2025-12-14 19:48:34,524 | INFO     | overall cleanup function is called
[2025-12-14 20:49:39] 2025-12-14 19:48:35,532 | INFO     | --- collectZombieJob: --- 10, [15744]
[2025-12-14 20:49:39] 2025-12-14 19:48:35,532 | INFO     | zombie collector waiting for pid 15744
[2025-12-14 20:49:39] 2025-12-14 19:48:35,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 20:49:39] 2025-12-14 19:48:35,532 | INFO     | collected zombie processes
[2025-12-14 20:49:39] 2025-12-14 19:48:35,533 | INFO     | will attempt to kill all subprocesses of pid=15744
[2025-12-14 20:49:39] 2025-12-14 19:48:35,640 | INFO     | process IDs to be killed: [15744] (in reverse order)
[2025-12-14 20:49:39] 2025-12-14 19:48:36,083 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 20:49:39] 2025-12-14 19:48:36,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 20:49:39] 2025-12-14 19:48:36,086 | INFO     | did not find any defunct processes belonging to 15744
[2025-12-14 20:49:39] 2025-12-14 19:48:36,089 | INFO     | did not find any defunct processes belonging to 15744
[2025-12-14 20:49:39] 2025-12-14 19:48:36,095 | INFO     | ready for new job
[2025-12-14 20:49:39] 2025-12-14 19:48:36,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 20:49:39] 2025-12-14 19:48:36,098 | INFO     | ***************************************
[2025-12-14 20:49:39] 2025-12-14 19:48:36,098 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 20:49:39] 2025-12-14 19:48:36,098 | INFO     | ***************************************
[2025-12-14 20:49:39] 2025-12-14 19:48:36,098 | INFO     | 
[2025-12-14 20:49:39] 2025-12-14 19:48:36,099 | INFO     | pilot is running in a VM
[2025-12-14 20:49:39] 2025-12-14 19:48:36,099 | INFO     | architecture information:
[2025-12-14 20:49:39] 2025-12-14 19:48:36,114 | INFO     | executing command: cat /etc/os-release
[2025-12-14 20:49:39] 2025-12-14 19:48:36,335 | INFO     | cat /etc/os-release:
[2025-12-14 20:49:39] NAME="CentOS Linux"
[2025-12-14 20:49:39] VERSION="7 (Core)"
[2025-12-14 20:49:39] ID="centos"
[2025-12-14 20:49:39] ID_LIKE="rhel fedora"
[2025-12-14 20:49:39] VERSION_ID="7"
[2025-12-14 20:49:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 20:49:39] ANSI_COLOR="0;31"
[2025-12-14 20:49:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 20:49:39] HOME_URL="https://www.centos.org/"
[2025-12-14 20:49:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 20:49:39] 
[2025-12-14 20:49:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 20:49:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 20:49:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 20:49:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 20:49:39] 
[2025-12-14 20:49:39] 2025-12-14 19:48:36,335 | INFO     | ***************************************
[2025-12-14 20:49:39] 2025-12-14 19:48:36,838 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-12-14 20:49:39] 2025-12-14 19:48:37,132 | INFO     | sufficient remaining disk space (496205037568 B)
[2025-12-14 20:49:39] 2025-12-14 19:48:37,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 20:49:39] 2025-12-14 19:48:37,133 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 20:49:39] 2025-12-14 19:48:37,133 | INFO     | update_server=False
[2025-12-14 20:49:39] 2025-12-14 19:48:37,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 20:49:39] 2025-12-14 19:48:37,135 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 20:49:39] 2025-12-14 19:48:37,222 | INFO     | all job control threads have been joined
[2025-12-14 20:49:39] 2025-12-14 19:48:37,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:49:39] 2025-12-14 19:48:37,540 | INFO     | aborting loop
[2025-12-14 20:49:39] 2025-12-14 19:48:37,962 | INFO     | all data control threads have been joined
[2025-12-14 20:49:39] 2025-12-14 19:48:38,139 | INFO     | [job] retrieve thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,180 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,228 | INFO     | [job] control thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,338 | INFO     | [job] validate thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,433 | INFO     | all payload control threads have been joined
[2025-12-14 20:49:39] 2025-12-14 19:48:38,546 | INFO     | [job] job monitor thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,768 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,822 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:38,968 | INFO     | [data] control thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,011 | INFO     | [data] copytool_in thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,142 | INFO     | [data] copytool_out thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,222 | INFO     | [payload] validate_post thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:49:39] 2025-12-14 19:48:39,379 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,438 | INFO     | [payload] control thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,527 | INFO     | [payload] failed_post thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:39,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 20:49:39] 2025-12-14 19:48:40,304 | INFO     | [job] queue monitor thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:48:43,840 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 20:49:39] 2025-12-14 19:49:07,354 | INFO     | PID=9193 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 20:49:39] 2025-12-14 19:49:07,354 | INFO     | .. there are 9 such processes running
[2025-12-14 20:49:39] 2025-12-14 19:49:07,354 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 20:49:39] 2025-12-14 19:49:07,355 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 20:49:39] 2025-12-14 19:49:07,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 20:49:39] 2025-12-14 19:49:28,550 | INFO     | [monitor] cgroup control has ended
[2025-12-14 20:49:39] 2025-12-14 19:49:30,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529197131584)>', '<ExcThread(monitor, started 140528595212032)>']
[2025-12-14 20:49:39] 2025-12-14 19:49:30,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 20:49:39] 2025-12-14 19:49:30,493 | INFO     | [monitor] control thread has ended
[2025-12-14 20:49:39] 2025-12-14 19:49:35,491 | INFO     | all workflow threads have been joined
[2025-12-14 20:49:39] 2025-12-14 19:49:35,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 20:49:39] 2025-12-14 19:49:35,492 | INFO     | traces error code: 0
[2025-12-14 20:49:39] 2025-12-14 19:49:35,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 20:49:39] 2025-12-14 19:49:35,849 [wrapper] ==== pilot stdout END ====
[2025-12-14 20:49:39] 2025-12-14 19:49:35,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 20:49:39] 2025-12-14 19:49:35,994 [wrapper] pilotpid: 9193
[2025-12-14 20:49:39] 2025-12-14 19:49:36,088 [wrapper] Pilot exit status: 0
[2025-12-14 20:49:39] 2025-12-14 19:49:36,570 [wrapper] pandaids: 6929308251
[2025-12-14 20:49:39] 2025-12-14 19:49:37,064 [wrapper] cleanup supervisor_pilot 15144 9194
[2025-12-14 20:49:39] 2025-12-14 19:49:37,077 [wrapper] Test setup, not cleaning
[2025-12-14 20:49:39] 2025-12-14 19:49:37,087 [wrapper] apfmon messages muted
[2025-12-14 20:49:39] 2025-12-14 19:49:37,099 [wrapper] ==== wrapper stdout END ====
[2025-12-14 20:49:39] 2025-12-14 19:49:37,183 [wrapper] ==== wrapper stderr END ====
[2025-12-14 20:49:39]  *** Error codes and diagnostics ***
[2025-12-14 20:49:39]     "exeErrorCode": 0,
[2025-12-14 20:49:39]     "exeErrorDiag": "",
[2025-12-14 20:49:39]     "pilotErrorCode": 0,
[2025-12-14 20:49:39]     "pilotErrorDiag": "",
[2025-12-14 20:49:39]  *** Listing of results directory ***
[2025-12-14 20:49:39] total 413692
[2025-12-14 20:49:39] -rwx------. 1 boinc boinc     36322 Dec 13 12:39 runpilot2-wrapper.sh
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc      5112 Dec 13 12:44 queuedata.json
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc    579449 Dec 13 12:45 pilot3.tar.gz
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc       100 Dec 14 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 20:49:39] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 14:48 run_atlas
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc       105 Dec 14 14:48 job.xml
[2025-12-14 20:49:39] -rw-r--r--. 2 boinc boinc 213605974 Dec 14 14:48 EVNT.47898833._000078.pool.root.1
[2025-12-14 20:49:39] -rw-r--r--. 2 boinc boinc     15847 Dec 14 14:48 start_atlas.sh
[2025-12-14 20:49:39] drwxrwx--x. 2 boinc boinc        68 Dec 14 14:48 shared
[2025-12-14 20:49:39] -rw-r--r--. 2 boinc boinc    592404 Dec 14 14:48 input.tar.gz
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc      6392 Dec 14 14:48 init_data.xml
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc         0 Dec 14 14:48 boinc_lockfile
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc      2549 Dec 14 14:48 pandaJob.out
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc    991736 Dec 14 14:51 agis_schedconf.cvmfs.json
[2025-12-14 20:49:39] drwx------. 5 boinc boinc      4096 Dec 14 14:51 pilot3
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc 199244964 Dec 14 20:45 HITS.47898836._001449.pool.root.1
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc       531 Dec 14 20:45 boinc_task_state.xml
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc      1020 Dec 14 20:46 memory_monitor_summary.json
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc   1516240 Dec 14 20:47 agis_ddmendpoints.agis.ALL.json
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc    568195 Dec 14 20:47 log.47898836._001449.job.log.tgz.1
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc        95 Dec 14 20:48 pilot_heartbeat.json
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc      7776 Dec 14 20:48 heartbeat.json
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc      4884 Dec 14 20:49 pilotlog.txt
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc   2868679 Dec 14 20:49 log.47898836._001449.job.log.1
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc      8192 Dec 14 20:49 boinc_mmap_file
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc       357 Dec 14 20:49 output.list
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc        28 Dec 14 20:49 wrapper_checkpoint.txt
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc       620 Dec 14 20:49 runtime_log
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc   3450880 Dec 14 20:49 result.tar.gz
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc      8833 Dec 14 20:49 runtime_log.err
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc       658 Dec 14 20:49 5G2MDmm9co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXOPKDmlBIElm.diag
[2025-12-14 20:49:39] -rw-r--r--. 1 boinc boinc     20801 Dec 14 20:49 stderr.txt
[2025-12-14 20:49:39] HITS file was successfully produced:
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc 199244964 Dec 14 20:45 shared/HITS.pool.root.1
[2025-12-14 20:49:39]  *** Contents of shared directory: ***
[2025-12-14 20:49:39] total 407144
[2025-12-14 20:49:39] -rw-r--r--. 2 boinc boinc 213605974 Dec 14 14:48 ATLAS.root_0
[2025-12-14 20:49:39] -rw-r--r--. 2 boinc boinc     15847 Dec 14 14:48 start_atlas.sh
[2025-12-14 20:49:39] -rw-r--r--. 2 boinc boinc    592404 Dec 14 14:48 input.tar.gz
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc 199244964 Dec 14 20:45 HITS.pool.root.1
[2025-12-14 20:49:39] -rw-------. 1 boinc boinc   3450880 Dec 14 20:49 result.tar.gz
20:49:41 (5417): run_atlas exited; CPU time 78223.935290
20:49:41 (5417): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN