Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:19:51 (10669): wrapper (7.7.26015): starting
04:19:51 (10669): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 04:19:51] Arguments: --nthreads 12
[2025-12-14 04:19:51] Threads: 12
[2025-12-14 04:19:51] Checking for CVMFS
[2025-12-14 04:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 04:19:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 04:19:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 04:19:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 04:19:52] 2.11.2.0 2991 313367 94820 153990 3 1 17098351 20275201 1 130560 1 138506211 99.959 19096434 15415 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 04:19:52] CVMFS is ok
[2025-12-14 04:19:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 04:19:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 04:19:52] Further information can be found at the LHC@home message board.
[2025-12-14 04:19:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 04:19:52] Checking for apptainer binary...
[2025-12-14 04:19:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 04:19:52] Running /usr/bin/apptainer --version
[2025-12-14 04:19:52] apptainer version 1.3.2-1.el7
[2025-12-14 04:19:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 04:19:53] c-205-32.aglt2.org
[2025-12-14 04:19:53] apptainer works
[2025-12-14 04:19:53] Set ATHENA_PROC_NUMBER=12
[2025-12-14 04:19:53] Set ATHENA_CORE_NUMBER=12
[2025-12-14 04:19:53] Starting ATLAS job with PandaID=6929343779
[2025-12-14 04:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 05:38:25]  *** The last 200 lines of the pilot log: ***
[2025-12-14 05:38:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 05:38:25]  replicas=None
[2025-12-14 05:38:25]  scope=mc23_13p6TeV
[2025-12-14 05:38:25]  status=None
[2025-12-14 05:38:25]  status_code=0
[2025-12-14 05:38:25]  storage_token=
[2025-12-14 05:38:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929343779/log.47886831._005903.job.log.tgz.1
[2025-12-14 05:38:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/8b/log.47886831._005903.job.log.tgz.1
[2025-12-14 05:38:25]  workdir=None
[2025-12-14 05:38:25] ]
[2025-12-14 05:38:25] 2025-12-14 10:37:46,709 | INFO     | transferring file log.47886831._005903.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929343779/log.47886831._005903.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 05:38:25] 2025-12-14 10:37:46,709 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929343779/log.47886831._005903.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._005903.job
[2025-12-14 05:38:25] 2025-12-14 10:37:46,730 | INFO     | adding to output.list: log.47886831._005903.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/8b/log.47886831._005903.job.log.tg
[2025-12-14 05:38:25] 2025-12-14 10:37:46,731 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 05:38:25] 2025-12-14 10:37:46,732 | INFO     | summary of transferred files:
[2025-12-14 05:38:25] 2025-12-14 10:37:46,732 | INFO     |  -- lfn=log.47886831._005903.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 05:38:25] 2025-12-14 10:37:46,732 | INFO     | stage-out finished correctly
[2025-12-14 05:38:25] 2025-12-14 10:37:46,816 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 05:38:25] 2025-12-14 10:37:47,690 | INFO     | monitor loop #347: job 0:6929343779 is in state 'finished'
[2025-12-14 05:38:25] 2025-12-14 10:37:47,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 05:38:25] 2025-12-14 10:37:47,997 | INFO     | time since job start (4658s) is within the limit (174528.0s)
[2025-12-14 05:38:25] 2025-12-14 10:37:48,816 | INFO     | job 6929343779 has state=finished
[2025-12-14 05:38:25] 2025-12-14 10:37:48,817 | INFO     | preparing for final server update for job 6929343779 in state='finished'
[2025-12-14 05:38:25] 2025-12-14 10:37:48,818 | INFO     | this job has now completed (state=finished)
[2025-12-14 05:38:25] 2025-12-14 10:37:48,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 05:38:25] 2025-12-14 10:37:48,818 | INFO     | log transfer has been attempted: DONE
[2025-12-14 05:38:25] 2025-12-14 10:37:48,819 | INFO     | job 6929343779 has finished - writing final server update
[2025-12-14 05:38:25] 2025-12-14 10:37:48,819 | INFO     | total number of processed events: 400 (read)
[2025-12-14 05:38:25] 2025-12-14 10:37:48,820 | INFO     | executing command: lscpu
[2025-12-14 05:38:25] 2025-12-14 10:37:48,845 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 05:38:25] 2025-12-14 10:37:50,003 | INFO     | time since job start (4661s) is within the limit (174528.0s)
[2025-12-14 05:38:25] 2025-12-14 10:37:50,195 | INFO     | monitor loop #348: job 0:6929343779 is in state 'finished'
[2025-12-14 05:38:25] 2025-12-14 10:37:50,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 05:38:25] 2025-12-14 10:37:51,128 | INFO     | PID=15355 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 05:38:25] 2025-12-14 10:37:52,129 | INFO     | time since job start (4663s) is within the limit (174528.0s)
[2025-12-14 05:38:25] 2025-12-14 10:37:52,698 | INFO     | monitor loop #349: job 0:6929343779 is in state 'finished'
[2025-12-14 05:38:25] 2025-12-14 10:37:52,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,348 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 05:38:25] 2025-12-14 10:37:53,353 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,356 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929343779/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,357 | INFO     | extracted standard info from prmon json
[2025-12-14 05:38:25] 2025-12-14 10:37:53,357 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 05:38:25] 2025-12-14 10:37:53,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 05:38:25] 2025-12-14 10:37:53,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 05:38:25] 2025-12-14 10:37:53,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 05:38:25] 2025-12-14 10:37:53,360 | INFO     | fitting pss+swap vs Time
[2025-12-14 05:38:25] 2025-12-14 10:37:53,360 | INFO     | sum of square deviations: 101843770.0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,360 | INFO     | sum of deviations: -8265912238.0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,360 | INFO     | mean x: 1765706417.0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,360 | INFO     | mean y: 2837970.913043478
[2025-12-14 05:38:25] 2025-12-14 10:37:53,361 | INFO     | intersect: 143312284204.05457
[2025-12-14 05:38:25] 2025-12-14 10:37:53,361 | INFO     | chi2: 0.06513810012080463
[2025-12-14 05:38:25] 2025-12-14 10:37:53,361 | INFO     | current memory leak: -81.16 B/s (using 69 data points, chi2=0.07)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,361 | INFO     | could have reported an average CPU frequency of 2063 MHz (6 samples)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,361 | INFO     | ..............................
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . Timing measurements:
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . get job = 0 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . initial setup = 2 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . payload setup = 7 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . stage-in = 0 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . payload execution = 4628 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . stage-out = 0 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | . log creation = 0 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,362 | INFO     | ..............................
[2025-12-14 05:38:25] 2025-12-14 10:37:53,445 | INFO     | 
[2025-12-14 05:38:25] 2025-12-14 10:37:53,445 | INFO     | job summary report
[2025-12-14 05:38:25] 2025-12-14 10:37:53,446 | INFO     | --------------------------------------------------
[2025-12-14 05:38:25] 2025-12-14 10:37:53,446 | INFO     | PanDA job id: 6929343779
[2025-12-14 05:38:25] 2025-12-14 10:37:53,446 | INFO     | task id: 47886831
[2025-12-14 05:38:25] 2025-12-14 10:37:53,446 | INFO     | errors: (none)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 05:38:25] 2025-12-14 10:37:53,446 | INFO     | pilot state: finished 
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | transexitcode: 0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | exeerrorcode: 0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | exeerrordiag: 
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | exitcode: 0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | exitmsg: OK
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | cpuconsumptiontime: 50658 s
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | nevents: 400
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | neventsw: 0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,447 | INFO     | pid: 22328
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | pgrp: 22328
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | corecount: 12
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | event service: False
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | sizes: {0: 2283990, 5: 2284252, 11: 2284308, 4639: 2310431, 4641: 2319485, 4648: 2319623}
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | --------------------------------------------------
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | 
[2025-12-14 05:38:25] 2025-12-14 10:37:53,448 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 05:38:25] 2025-12-14 10:37:53,471 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,471 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,471 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,472 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,473 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,473 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,473 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,474 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,474 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,474 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 05:38:25] 2025-12-14 10:37:53,475 | INFO     | job 6929343779 has completed (purged errors)
[2025-12-14 05:38:25] 2025-12-14 10:37:53,475 | INFO     | overall cleanup function is called
[2025-12-14 05:38:25] 2025-12-14 10:37:54,483 | INFO     | --- collectZombieJob: --- 10, [22328]
[2025-12-14 05:38:25] 2025-12-14 10:37:54,483 | INFO     | zombie collector waiting for pid 22328
[2025-12-14 05:38:25] 2025-12-14 10:37:54,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 05:38:25] 2025-12-14 10:37:54,484 | INFO     | collected zombie processes
[2025-12-14 05:38:25] 2025-12-14 10:37:54,484 | INFO     | will attempt to kill all subprocesses of pid=22328
[2025-12-14 05:38:25] 2025-12-14 10:37:54,580 | INFO     | process IDs to be killed: [22328] (in reverse order)
[2025-12-14 05:38:25] 2025-12-14 10:37:54,632 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 05:38:25] 2025-12-14 10:37:54,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 05:38:25] 2025-12-14 10:37:54,636 | INFO     | did not find any defunct processes belonging to 22328
[2025-12-14 05:38:25] 2025-12-14 10:37:54,639 | INFO     | did not find any defunct processes belonging to 22328
[2025-12-14 05:38:25] 2025-12-14 10:37:54,639 | INFO     | ready for new job
[2025-12-14 05:38:25] 2025-12-14 10:37:54,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 05:38:25] 2025-12-14 10:37:54,641 | INFO     | ***************************************
[2025-12-14 05:38:25] 2025-12-14 10:37:54,641 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 05:38:25] 2025-12-14 10:37:54,641 | INFO     | ***************************************
[2025-12-14 05:38:25] 2025-12-14 10:37:54,641 | INFO     | 
[2025-12-14 05:38:25] 2025-12-14 10:37:54,642 | INFO     | architecture information:
[2025-12-14 05:38:25] 2025-12-14 10:37:54,642 | INFO     | executing command: cat /etc/os-release
[2025-12-14 05:38:25] 2025-12-14 10:37:54,658 | INFO     | cat /etc/os-release:
[2025-12-14 05:38:25] NAME="CentOS Linux"
[2025-12-14 05:38:25] VERSION="7 (Core)"
[2025-12-14 05:38:25] ID="centos"
[2025-12-14 05:38:25] ID_LIKE="rhel fedora"
[2025-12-14 05:38:25] VERSION_ID="7"
[2025-12-14 05:38:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 05:38:25] ANSI_COLOR="0;31"
[2025-12-14 05:38:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 05:38:25] HOME_URL="https://www.centos.org/"
[2025-12-14 05:38:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 05:38:25] 
[2025-12-14 05:38:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 05:38:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 05:38:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 05:38:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 05:38:25] 
[2025-12-14 05:38:25] 2025-12-14 10:37:54,658 | INFO     | ***************************************
[2025-12-14 05:38:25] 2025-12-14 10:37:55,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 05:38:25] 2025-12-14 10:37:55,177 | INFO     | sufficient remaining disk space (29452402688 B)
[2025-12-14 05:38:25] 2025-12-14 10:37:55,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 05:38:25] 2025-12-14 10:37:55,178 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 05:38:25] 2025-12-14 10:37:55,178 | INFO     | update_server=False
[2025-12-14 05:38:25] 2025-12-14 10:37:55,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 05:38:25] 2025-12-14 10:37:55,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:38:25] 2025-12-14 10:37:55,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 05:38:25] 2025-12-14 10:37:55,203 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 05:38:25] 2025-12-14 10:37:55,204 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 05:38:25] 2025-12-14 10:37:55,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:38:25] 2025-12-14 10:37:55,204 | INFO     | will abort loop
[2025-12-14 05:38:25] 2025-12-14 10:37:55,341 | INFO     | all job control threads have been joined
[2025-12-14 05:38:25] 2025-12-14 10:37:55,734 | INFO     | all payload control threads have been joined
[2025-12-14 05:38:25] 2025-12-14 10:37:56,184 | INFO     | [job] retrieve thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,185 | INFO     | [job] queue monitor thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,209 | INFO     | [job] job monitor thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,216 | INFO     | all data control threads have been joined
[2025-12-14 05:38:25] 2025-12-14 10:37:56,346 | INFO     | [job] control thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,482 | INFO     | [payload] failed_post thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,740 | INFO     | [payload] control thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,821 | INFO     | [payload] validate_post thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:56,847 | INFO     | [job] validate thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,107 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,185 | INFO     | [data] copytool_out thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,221 | INFO     | [data] control thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,299 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 05:38:25] 2025-12-14 10:37:57,534 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:37:57,618 | INFO     | [data] copytool_in thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:38:01,410 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 05:38:25] 2025-12-14 10:38:16,516 | INFO     | [monitor] cgroup control has ended
[2025-12-14 05:38:25] 2025-12-14 10:38:17,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139947243788096)>', '<ExcThread(monitor, started 139946669106944)>']
[2025-12-14 05:38:25] 2025-12-14 10:38:22,936 | INFO     | all workflow threads have been joined
[2025-12-14 05:38:25] 2025-12-14 10:38:22,936 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 05:38:25] 2025-12-14 10:38:22,936 | INFO     | traces error code: 0
[2025-12-14 05:38:25] 2025-12-14 10:38:22,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 05:38:25] 2025-12-14 10:38:25,313 | INFO     | PID=15355 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 05:38:25] 2025-12-14 10:38:25,314 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 05:38:25] 2025-12-14 10:38:25,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 05:38:25] 2025-12-14 10:38:25,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 05:38:25] 2025-12-14 10:38:25,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 05:38:25] 2025-12-14 10:38:25,315 | INFO     | [monitor] control thread has ended
[2025-12-14 05:38:25] 2025-12-14 10:38:25,400 [wrapper] ==== pilot stdout END ====
[2025-12-14 05:38:25] 2025-12-14 10:38:25,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 05:38:25] 2025-12-14 10:38:25,406 [wrapper] pilotpid: 15355
[2025-12-14 05:38:25] 2025-12-14 10:38:25,410 [wrapper] Pilot exit status: 0
[2025-12-14 05:38:25] 2025-12-14 10:38:25,425 [wrapper] pandaids: 6929343779
[2025-12-14 05:38:25] 2025-12-14 10:38:25,465 [wrapper] cleanup supervisor_pilot 17560 15356
[2025-12-14 05:38:25] 2025-12-14 10:38:25,469 [wrapper] Test setup, not cleaning
[2025-12-14 05:38:25] 2025-12-14 10:38:25,473 [wrapper] apfmon messages muted
[2025-12-14 05:38:25] 2025-12-14 10:38:25,476 [wrapper] ==== wrapper stdout END ====
[2025-12-14 05:38:25] 2025-12-14 10:38:25,480 [wrapper] ==== wrapper stderr END ====
[2025-12-14 05:38:25]  *** Error codes and diagnostics ***
[2025-12-14 05:38:25]     "exeErrorCode": 0,
[2025-12-14 05:38:25]     "exeErrorDiag": "",
[2025-12-14 05:38:25]     "pilotErrorCode": 0,
[2025-12-14 05:38:25]     "pilotErrorDiag": "",
[2025-12-14 05:38:25]  *** Listing of results directory ***
[2025-12-14 05:38:25] total 338556
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 12:18 pilot3.tar.gz
[2025-12-14 05:38:25] -rwx------ 1 boincer umatlas     36322 Dec 13 12:22 runpilot2-wrapper.sh
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 12:24 queuedata.json
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas       100 Dec 14 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 05:38:25] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 04:19 run_atlas
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas       105 Dec 14 04:19 job.xml
[2025-12-14 05:38:25] -rw-r--r-- 2 boincer umatlas 194306624 Dec 14 04:19 EVNT.47886829._000236.pool.root.1
[2025-12-14 05:38:25] -rw-r--r-- 2 boincer umatlas    592418 Dec 14 04:19 input.tar.gz
[2025-12-14 05:38:25] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 04:19 start_atlas.sh
[2025-12-14 05:38:25] drwxrwx--x 2 boincer umatlas      4096 Dec 14 04:19 shared
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas         0 Dec 14 04:19 boinc_lockfile
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas      2538 Dec 14 04:19 pandaJob.out
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas        57 Dec 14 04:19 setup.sh.local
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas    991736 Dec 14 04:20 agis_schedconf.cvmfs.json
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas   1516240 Dec 14 04:20 agis_ddmendpoints.agis.ALL.json
[2025-12-14 05:38:25] drwx------ 5 boincer umatlas      4096 Dec 14 04:20 pilot3
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 05:31 init_data.xml
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas 146336246 Dec 14 05:37 HITS.47886831._005903.pool.root.1
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas       529 Dec 14 05:37 boinc_task_state.xml
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas      1044 Dec 14 05:37 memory_monitor_summary.json
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas    385172 Dec 14 05:37 log.47886831._005903.job.log.tgz.1
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas      7861 Dec 14 05:37 heartbeat.json
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas        27 Dec 14 05:38 wrapper_checkpoint.txt
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 05:38 boinc_mmap_file
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas        95 Dec 14 05:38 pilot_heartbeat.json
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas       745 Dec 14 05:38 pilotlog.txt
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas    674278 Dec 14 05:38 log.47886831._005903.job.log.1
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas       357 Dec 14 05:38 output.list
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas       620 Dec 14 05:38 runtime_log
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas   1075200 Dec 14 05:38 result.tar.gz
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas       659 Dec 14 05:38 WtUNDm2Uio8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmx2PKDmEwoXem.diag
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 05:38 runtime_log.err
[2025-12-14 05:38:25] -rw-r--r-- 1 boincer umatlas     21995 Dec 14 05:38 stderr.txt
[2025-12-14 05:38:25] HITS file was successfully produced:
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas 146336246 Dec 14 05:37 shared/HITS.pool.root.1
[2025-12-14 05:38:25]  *** Contents of shared directory: ***
[2025-12-14 05:38:25] total 334320
[2025-12-14 05:38:25] -rw-r--r-- 2 boincer umatlas 194306624 Dec 14 04:19 ATLAS.root_0
[2025-12-14 05:38:25] -rw-r--r-- 2 boincer umatlas    592418 Dec 14 04:19 input.tar.gz
[2025-12-14 05:38:25] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 04:19 start_atlas.sh
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas 146336246 Dec 14 05:37 HITS.pool.root.1
[2025-12-14 05:38:25] -rw------- 1 boincer umatlas   1075200 Dec 14 05:38 result.tar.gz
05:38:26 (10669): run_atlas exited; CPU time 50641.681399
05:38:26 (10669): called boinc_finish(0)

</stderr_txt>
]]>

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