Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:33:15 (6728): wrapper (7.7.26015): starting
03:33:15 (6728): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 03:33:15] Arguments: --nthreads 12
[2025-12-14 03:33:15] Threads: 12
[2025-12-14 03:33:15] Checking for CVMFS
[2025-12-14 03:33:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 03:33:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 03:33:15] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 03:33:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 03:33:15] 2.11.2.0 3103 103342 96708 153989 0 57 16695272 20275201 1 130560 0 45010629 99.929 5425827 33042 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 03:33:15] CVMFS is ok
[2025-12-14 03:33:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 03:33:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 03:33:15] Further information can be found at the LHC@home message board.
[2025-12-14 03:33:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 03:33:15] Checking for apptainer binary...
[2025-12-14 03:33:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 03:33:15] Running /usr/bin/apptainer --version
[2025-12-14 03:33:16] apptainer version 1.3.2-1.el7
[2025-12-14 03:33:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 03:33:17] c-115-41.aglt2.org
[2025-12-14 03:33:17] apptainer works
[2025-12-14 03:33:17] Set ATHENA_PROC_NUMBER=12
[2025-12-14 03:33:17] Set ATHENA_CORE_NUMBER=12
[2025-12-14 03:33:17] Starting ATLAS job with PandaID=6929348232
[2025-12-14 03:33:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 05:04:08]  *** The last 200 lines of the pilot log: ***
[2025-12-14 05:04:08] 2025-12-14 10:03:28,912 | INFO     | summary of transferred files:
[2025-12-14 05:04:08] 2025-12-14 10:03:28,912 | INFO     |  -- lfn=log.47898782._003210.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 05:04:08] 2025-12-14 10:03:28,913 | INFO     | stage-out finished correctly
[2025-12-14 05:04:08] 2025-12-14 10:03:28,988 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 05:04:08] 2025-12-14 10:03:29,641 | WARNING  | process 16876 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 05:04:08] 2025-12-14 10:03:29,641 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929348232/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,649 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929348232/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,650 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-14 05:04:08] 2025-12-14 10:03:29,650 | WARNING  | maxPSS not found in memory monitor output
[2025-12-14 05:04:08] 2025-12-14 10:03:29,651 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4635919 B
[2025-12-14 05:04:08] 2025-12-14 10:03:29,651 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15598 B
[2025-12-14 05:04:08] 2025-12-14 10:03:29,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 05:04:08] 2025-12-14 10:03:29,667 | INFO     | sufficient remaining disk space (18568183808 B)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,668 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,668 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929348232: 4939867 B (within 2768240640 B limit)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,669 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929348232/HITS.47898782._003210.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,669 | INFO     | total size of present files: 0 B (workdir size: 4939867 B)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,669 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929348232/HITS.47898782._003210.pool.root.1 since it does not exist
[2025-12-14 05:04:08] 2025-12-14 10:03:29,758 | INFO     | number of running child processes to parent process 16876: 1
[2025-12-14 05:04:08] 2025-12-14 10:03:29,758 | INFO     | maximum number of monitored processes: 6
[2025-12-14 05:04:08] 2025-12-14 10:03:29,880 | INFO     | job 6929348232 has state=finished
[2025-12-14 05:04:08] 2025-12-14 10:03:29,880 | INFO     | preparing for final server update for job 6929348232 in state='finished'
[2025-12-14 05:04:08] 2025-12-14 10:03:29,881 | INFO     | this job has now completed (state=finished)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,881 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,881 | INFO     | log transfer has been attempted: DONE
[2025-12-14 05:04:08] 2025-12-14 10:03:29,881 | INFO     | job 6929348232 has finished - writing final server update
[2025-12-14 05:04:08] 2025-12-14 10:03:29,882 | INFO     | total number of processed events: 400 (read)
[2025-12-14 05:04:08] 2025-12-14 10:03:29,882 | INFO     | executing command: lscpu
[2025-12-14 05:04:08] 2025-12-14 10:03:29,904 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 05:04:08] 2025-12-14 10:03:29,910 | INFO     | PID=10489 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 05:04:08] 2025-12-14 10:03:30,013 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-12-14 05:04:08] 2025-12-14 10:03:30,911 | INFO     | time since job start (5398s) is within the limit (174528.0s)
[2025-12-14 05:04:08] 2025-12-14 10:03:32,261 | INFO     | monitor loop #402: job 0:6929348232 is in state 'finished'
[2025-12-14 05:04:08] 2025-12-14 10:03:32,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 05:04:08] 2025-12-14 10:03:32,916 | INFO     | time since job start (5400s) is within the limit (174528.0s)
[2025-12-14 05:04:08] 2025-12-14 10:03:34,764 | INFO     | monitor loop #403: job 0:6929348232 is in state 'finished'
[2025-12-14 05:04:08] 2025-12-14 10:03:34,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 05:04:08] 2025-12-14 10:03:34,921 | INFO     | time since job start (5402s) is within the limit (174528.0s)
[2025-12-14 05:04:08] 2025-12-14 10:03:35,743 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 05:04:08] 2025-12-14 10:03:35,747 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2025-12-14 05:04:08] 2025-12-14 10:03:35,749 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929348232/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 05:04:08] 2025-12-14 10:03:35,750 | INFO     | extracted standard info from prmon json
[2025-12-14 05:04:08] 2025-12-14 10:03:35,750 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 05:04:08] 2025-12-14 10:03:35,750 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 05:04:08] 2025-12-14 10:03:35,750 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 05:04:08] 2025-12-14 10:03:35,750 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 05:04:08] 2025-12-14 10:03:35,752 | INFO     | fitting pss+swap vs Time
[2025-12-14 05:04:08] 2025-12-14 10:03:35,752 | INFO     | sum of square deviations: 164765880.0
[2025-12-14 05:04:08] 2025-12-14 10:03:35,752 | INFO     | sum of deviations: -13202029188.0
[2025-12-14 05:04:08] 2025-12-14 10:03:35,753 | INFO     | mean x: 1765703985.0
[2025-12-14 05:04:08] 2025-12-14 10:03:35,753 | INFO     | mean y: 2837986.049382716
[2025-12-14 05:04:08] 2025-12-14 10:03:35,753 | INFO     | intersect: 141481617132.18033
[2025-12-14 05:04:08] 2025-12-14 10:03:35,753 | INFO     | chi2: 0.060730470587695935
[2025-12-14 05:04:08] 2025-12-14 10:03:35,753 | INFO     | current memory leak: -80.13 B/s (using 81 data points, chi2=0.06)
[2025-12-14 05:04:08] 2025-12-14 10:03:35,753 | INFO     | could have reported an average CPU frequency of 2154 MHz (6 samples)
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | ..............................
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . Timing measurements:
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . get job = 0 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . initial setup = 2 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . payload setup = 6 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . stage-in = 0 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . payload execution = 5369 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . stage-out = 0 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | . log creation = 0 s
[2025-12-14 05:04:08] 2025-12-14 10:03:35,754 | INFO     | ..............................
[2025-12-14 05:04:08] 2025-12-14 10:03:36,123 | INFO     | 
[2025-12-14 05:04:08] 2025-12-14 10:03:36,123 | INFO     | job summary report
[2025-12-14 05:04:08] 2025-12-14 10:03:36,123 | INFO     | --------------------------------------------------
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | PanDA job id: 6929348232
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | task id: 47898782
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | errors: (none)
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | pilot state: finished 
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | transexitcode: 0
[2025-12-14 05:04:08] 2025-12-14 10:03:36,124 | INFO     | exeerrorcode: 0
[2025-12-14 05:04:08] 2025-12-14 10:03:36,125 | INFO     | exeerrordiag: 
[2025-12-14 05:04:08] 2025-12-14 10:03:36,125 | INFO     | exitcode: 0
[2025-12-14 05:04:08] 2025-12-14 10:03:36,125 | INFO     | exitmsg: OK
[2025-12-14 05:04:08] 2025-12-14 10:03:36,125 | INFO     | cpuconsumptiontime: 60387 s
[2025-12-14 05:04:08] 2025-12-14 10:03:36,125 | INFO     | nevents: 400
[2025-12-14 05:04:08] 2025-12-14 10:03:36,125 | INFO     | neventsw: 0
[2025-12-14 05:04:08] 2025-12-14 10:03:36,126 | INFO     | pid: 16876
[2025-12-14 05:04:08] 2025-12-14 10:03:36,126 | INFO     | pgrp: 16876
[2025-12-14 05:04:08] 2025-12-14 10:03:36,126 | INFO     | corecount: 12
[2025-12-14 05:04:08] 2025-12-14 10:03:36,126 | INFO     | event service: False
[2025-12-14 05:04:08] 2025-12-14 10:03:36,126 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 5379: 2310776, 5380: 2319830, 5387: 2319996}
[2025-12-14 05:04:08] 2025-12-14 10:03:36,126 | INFO     | --------------------------------------------------
[2025-12-14 05:04:08] 2025-12-14 10:03:36,127 | INFO     | 
[2025-12-14 05:04:08] 2025-12-14 10:03:36,127 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 05:04:08] 2025-12-14 10:03:36,152 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,152 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,152 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,153 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,153 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,153 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,153 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,153 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,153 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,154 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,154 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,154 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,154 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 05:04:08] 2025-12-14 10:03:36,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 05:04:08] 2025-12-14 10:03:36,155 | INFO     | job 6929348232 has completed (purged errors)
[2025-12-14 05:04:08] 2025-12-14 10:03:36,156 | INFO     | overall cleanup function is called
[2025-12-14 05:04:08] 2025-12-14 10:03:37,164 | INFO     | --- collectZombieJob: --- 10, [16876]
[2025-12-14 05:04:08] 2025-12-14 10:03:37,164 | INFO     | zombie collector waiting for pid 16876
[2025-12-14 05:04:08] 2025-12-14 10:03:37,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 05:04:08] 2025-12-14 10:03:37,164 | INFO     | collected zombie processes
[2025-12-14 05:04:08] 2025-12-14 10:03:37,165 | INFO     | will attempt to kill all subprocesses of pid=16876
[2025-12-14 05:04:08] 2025-12-14 10:03:37,256 | INFO     | process IDs to be killed: [16876] (in reverse order)
[2025-12-14 05:04:08] 2025-12-14 10:03:37,306 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 05:04:08] 2025-12-14 10:03:37,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 05:04:08] 2025-12-14 10:03:37,310 | INFO     | did not find any defunct processes belonging to 16876
[2025-12-14 05:04:08] 2025-12-14 10:03:37,312 | INFO     | did not find any defunct processes belonging to 16876
[2025-12-14 05:04:08] 2025-12-14 10:03:37,312 | INFO     | ready for new job
[2025-12-14 05:04:08] 2025-12-14 10:03:37,312 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 05:04:08] 2025-12-14 10:03:37,313 | INFO     | ***************************************
[2025-12-14 05:04:08] 2025-12-14 10:03:37,313 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 05:04:08] 2025-12-14 10:03:37,313 | INFO     | ***************************************
[2025-12-14 05:04:08] 2025-12-14 10:03:37,314 | INFO     | 
[2025-12-14 05:04:08] 2025-12-14 10:03:37,314 | INFO     | architecture information:
[2025-12-14 05:04:08] 2025-12-14 10:03:37,315 | INFO     | executing command: cat /etc/os-release
[2025-12-14 05:04:08] 2025-12-14 10:03:37,329 | INFO     | cat /etc/os-release:
[2025-12-14 05:04:08] NAME="CentOS Linux"
[2025-12-14 05:04:08] VERSION="7 (Core)"
[2025-12-14 05:04:08] ID="centos"
[2025-12-14 05:04:08] ID_LIKE="rhel fedora"
[2025-12-14 05:04:08] VERSION_ID="7"
[2025-12-14 05:04:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 05:04:08] ANSI_COLOR="0;31"
[2025-12-14 05:04:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 05:04:08] HOME_URL="https://www.centos.org/"
[2025-12-14 05:04:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 05:04:08] 
[2025-12-14 05:04:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 05:04:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 05:04:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 05:04:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 05:04:08] 
[2025-12-14 05:04:08] 2025-12-14 10:03:37,329 | INFO     | ***************************************
[2025-12-14 05:04:08] 2025-12-14 10:03:37,832 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 05:04:08] 2025-12-14 10:03:37,847 | INFO     | sufficient remaining disk space (18574475264 B)
[2025-12-14 05:04:08] 2025-12-14 10:03:37,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 05:04:08] 2025-12-14 10:03:37,848 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 05:04:08] 2025-12-14 10:03:37,848 | INFO     | update_server=False
[2025-12-14 05:04:08] 2025-12-14 10:03:37,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 05:04:08] 2025-12-14 10:03:37,848 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 05:04:08] 2025-12-14 10:03:38,087 | INFO     | all payload control threads have been joined
[2025-12-14 05:04:08] 2025-12-14 10:03:38,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:04:08] 2025-12-14 10:03:38,284 | INFO     | aborting loop
[2025-12-14 05:04:08] 2025-12-14 10:03:38,696 | INFO     | all job control threads have been joined
[2025-12-14 05:04:08] 2025-12-14 10:03:38,854 | INFO     | [job] retrieve thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:38,896 | INFO     | all data control threads have been joined
[2025-12-14 05:04:08] 2025-12-14 10:03:38,909 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,061 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,092 | INFO     | [payload] control thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,261 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,290 | INFO     | [job] job monitor thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,569 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 05:04:08] 2025-12-14 10:03:39,570 | INFO     | [data] copytool_in thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,701 | INFO     | [job] control thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,827 | INFO     | [payload] validate_post thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,854 | INFO     | [data] copytool_out thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:39,901 | INFO     | [data] control thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:40,299 | INFO     | [payload] failed_post thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:40,344 | INFO     | [monitor] cgroup control has ended
[2025-12-14 05:04:08] 2025-12-14 10:03:40,348 | INFO     | [job] validate thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:40,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:04:08] 2025-12-14 10:03:41,841 | INFO     | [job] queue monitor thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:43,576 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:48,197 | INFO     | job.realtimelogging is not enabled
[2025-12-14 05:04:08] 2025-12-14 10:03:49,203 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 05:04:08] 2025-12-14 10:03:50,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140700544091968)>', '<ExcThread(monitor, started 140699286624000)>']
[2025-12-14 05:04:08] 2025-12-14 10:03:55,109 | INFO     | all workflow threads have been joined
[2025-12-14 05:04:08] 2025-12-14 10:03:55,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 05:04:08] 2025-12-14 10:03:55,110 | INFO     | traces error code: 0
[2025-12-14 05:04:08] 2025-12-14 10:03:55,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 05:04:08] 2025-12-14 10:04:08,111 | INFO     | PID=10489 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 05:04:08] 2025-12-14 10:04:08,112 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 05:04:08] 2025-12-14 10:04:08,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 05:04:08] 2025-12-14 10:04:08,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 05:04:08] 2025-12-14 10:04:08,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 05:04:08] 2025-12-14 10:04:08,112 | INFO     | [monitor] control thread has ended
[2025-12-14 05:04:08] 2025-12-14 10:04:08,197 [wrapper] ==== pilot stdout END ====
[2025-12-14 05:04:08] 2025-12-14 10:04:08,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 05:04:08] 2025-12-14 10:04:08,204 [wrapper] pilotpid: 10489
[2025-12-14 05:04:08] 2025-12-14 10:04:08,208 [wrapper] Pilot exit status: 0
[2025-12-14 05:04:08] 2025-12-14 10:04:08,224 [wrapper] pandaids: 6929348232
[2025-12-14 05:04:08] 2025-12-14 10:04:08,264 [wrapper] cleanup supervisor_pilot 29061 10490
[2025-12-14 05:04:08] 2025-12-14 10:04:08,269 [wrapper] Test setup, not cleaning
[2025-12-14 05:04:08] 2025-12-14 10:04:08,273 [wrapper] apfmon messages muted
[2025-12-14 05:04:08] 2025-12-14 10:04:08,277 [wrapper] ==== wrapper stdout END ====
[2025-12-14 05:04:08] 2025-12-14 10:04:08,280 [wrapper] ==== wrapper stderr END ====
[2025-12-14 05:04:08]  *** Error codes and diagnostics ***
[2025-12-14 05:04:08]     "exeErrorCode": 0,
[2025-12-14 05:04:08]     "exeErrorDiag": "",
[2025-12-14 05:04:08]     "pilotErrorCode": 0,
[2025-12-14 05:04:08]     "pilotErrorDiag": "",
[2025-12-14 05:04:08]  *** Listing of results directory ***
[2025-12-14 05:04:08] total 411536
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 12:18 pilot3.tar.gz
[2025-12-14 05:04:08] -rwx------ 1 boincer umatlas     36322 Dec 13 12:21 runpilot2-wrapper.sh
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 12:21 queuedata.json
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas       100 Dec 14 03:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 05:04:08] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 03:33 run_atlas
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas       105 Dec 14 03:33 job.xml
[2025-12-14 05:04:08] -rw-r--r-- 2 boincer umatlas 216894281 Dec 14 03:33 EVNT.47898779._000135.pool.root.1
[2025-12-14 05:04:08] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 03:33 start_atlas.sh
[2025-12-14 05:04:08] drwxrwx--x 2 boincer umatlas      4096 Dec 14 03:33 shared
[2025-12-14 05:04:08] -rw-r--r-- 2 boincer umatlas    592393 Dec 14 03:33 input.tar.gz
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas         0 Dec 14 03:33 boinc_lockfile
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas      2522 Dec 14 03:33 pandaJob.out
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas        57 Dec 14 03:33 setup.sh.local
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas    991728 Dec 14 03:33 agis_schedconf.cvmfs.json
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas   1516240 Dec 14 03:33 agis_ddmendpoints.agis.ALL.json
[2025-12-14 05:04:08] drwx------ 5 boincer umatlas      4096 Dec 14 03:33 pilot3
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas 198241606 Dec 14 05:02 HITS.47898782._003210.pool.root.1
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas       529 Dec 14 05:03 boinc_task_state.xml
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas      5954 Dec 14 05:03 init_data.xml
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas      1046 Dec 14 05:03 memory_monitor_summary.json
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas    409827 Dec 14 05:03 log.47898782._003210.job.log.tgz.1
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas      7847 Dec 14 05:03 heartbeat.json
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 05:04 boinc_mmap_file
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas        27 Dec 14 05:04 wrapper_checkpoint.txt
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas        95 Dec 14 05:04 pilot_heartbeat.json
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas       745 Dec 14 05:04 pilotlog.txt
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas    774005 Dec 14 05:04 log.47898782._003210.job.log.1
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas       357 Dec 14 05:04 output.list
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas       620 Dec 14 05:04 runtime_log
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas   1198080 Dec 14 05:04 result.tar.gz
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas       659 Dec 14 05:04 U3kLDm2Tio8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmc5TKDmAo4Stn.diag
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 05:04 runtime_log.err
[2025-12-14 05:04:08] -rw-r--r-- 1 boincer umatlas     22488 Dec 14 05:04 stderr.txt
[2025-12-14 05:04:08] HITS file was successfully produced:
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas 198241606 Dec 14 05:02 shared/HITS.pool.root.1
[2025-12-14 05:04:08]  *** Contents of shared directory: ***
[2025-12-14 05:04:08] total 407180
[2025-12-14 05:04:08] -rw-r--r-- 2 boincer umatlas 216894281 Dec 14 03:33 ATLAS.root_0
[2025-12-14 05:04:08] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 03:33 start_atlas.sh
[2025-12-14 05:04:08] -rw-r--r-- 2 boincer umatlas    592393 Dec 14 03:33 input.tar.gz
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas 198241606 Dec 14 05:02 HITS.pool.root.1
[2025-12-14 05:04:08] -rw------- 1 boincer umatlas   1198080 Dec 14 05:04 result.tar.gz
05:04:10 (6728): run_atlas exited; CPU time 60358.201314
05:04:10 (6728): called boinc_finish(0)

</stderr_txt>
]]>

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