Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:21:19 (1155108): wrapper (7.7.26015): starting
09:21:19 (1155108): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 09:21:19] Arguments: --nthreads 4
[2025-12-14 09:21:19] Threads: 4
[2025-12-14 09:21:19] Checking for CVMFS
[2025-12-14 09:21:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 09:21:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 09:21:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 09:21:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 09:21:20] 2.9.2.0 704515 117 69408 153989 3 16 19180267 36864000 0 130560 0 1193382 100.000 5430 335 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 09:21:20] CVMFS is ok
[2025-12-14 09:21:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 09:21:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 09:21:20] Further information can be found at the LHC@home message board.
[2025-12-14 09:21:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 09:21:20] Checking for apptainer binary...
[2025-12-14 09:21:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 09:21:20] Running /usr/bin/apptainer --version
[2025-12-14 09:21:20] apptainer version 1.4.1-1.1
[2025-12-14 09:21:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 09:21:20] thA325
[2025-12-14 09:21:20] apptainer works
[2025-12-14 09:21:20] Set ATHENA_PROC_NUMBER=4
[2025-12-14 09:21:20] Set ATHENA_CORE_NUMBER=4
[2025-12-14 09:21:20] Starting ATLAS job with PandaID=6929365480
[2025-12-14 09:21:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 09:25:40]  *** The last 200 lines of the pilot log: ***
[2025-12-14 09:25:40] 2025-12-14 08:24:38,952 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | INFO     | sufficient remaining disk space (242313330688 B)
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | INFO     | update_server=False
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | INFO     | aborting loop
[2025-12-14 09:25:40] 2025-12-14 08:24:38,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:25:40] 2025-12-14 08:24:39,565 | INFO     | all job control threads have been joined
[2025-12-14 09:25:40] 2025-12-14 08:24:39,579 | INFO     | all data control threads have been joined
[2025-12-14 09:25:40] 2025-12-14 08:24:39,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 09:25:40] 2025-12-14 08:24:39,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 09:25:40] 2025-12-14 08:24:39,973 | INFO     | [job] retrieve thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:39,976 | INFO     | [job] job monitor thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:39,976 | INFO     | [job] queue monitor thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:40,050 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:40,235 | INFO     | [data] copytool_in thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:40,279 | INFO     | [payload] validate_post thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:40,387 | INFO     | all payload control threads have been joined
[2025-12-14 09:25:40] 2025-12-14 08:24:40,571 | INFO     | [job] control thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:40,585 | INFO     | [data] control thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:40,789 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:41,027 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:41,065 | INFO     | [payload] failed_post thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:41,374 | INFO     | [job] validate thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:41,392 | INFO     | [payload] control thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:41,473 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:41,909 | INFO     | [data] copytool_out thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:24:43,895 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 09:25:40] 2025-12-14 08:25:09,982 | INFO     | PID=1158892 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 09:25:40] 2025-12-14 08:25:09,982 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 09:25:40] 2025-12-14 08:25:09,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 09:25:40] 2025-12-14 08:25:09,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 09:25:40] 2025-12-14 08:25:35,060 | INFO     | [monitor] cgroup control has ended
[2025-12-14 09:25:40] 2025-12-14 08:25:35,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734304741184)>', '<ExcThread(monitor, started 139733489391360)>']
[2025-12-14 09:25:40] 2025-12-14 08:25:36,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 09:25:40] 2025-12-14 08:25:36,117 | INFO     | [monitor] control thread has ended
[2025-12-14 09:25:40] 2025-12-14 08:25:40,161 | INFO     | all workflow threads have been joined
[2025-12-14 09:25:40] 2025-12-14 08:25:40,161 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 09:25:40] 2025-12-14 08:25:40,162 | INFO     | traces error code: 0
[2025-12-14 09:25:40] 2025-12-14 08:25:40,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 09:25:40] 2025-12-14 08:25:40,227 [wrapper] ==== pilot stdout END ====
[2025-12-14 09:25:40] 2025-12-14 08:25:40,231 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 09:25:40] 2025-12-14 08:25:40,235 [wrapper] pilotpid: 1158892
[2025-12-14 09:25:40] 2025-12-14 08:25:40,239 [wrapper] Pilot exit status: 0
[2025-12-14 09:25:40] 2025-12-14 08:25:40,249 [wrapper] pandaids: 6929365480
[2025-12-14 09:25:40] 2025-12-14 08:25:40,271 [wrapper] cleanup supervisor_pilot 1158898 1158893
[2025-12-14 09:25:40] 2025-12-14 08:25:40,275 [wrapper] Test setup, not cleaning
[2025-12-14 09:25:40] 2025-12-14 08:25:40,278 [wrapper] apfmon messages muted
[2025-12-14 09:25:40] 2025-12-14 08:25:40,282 [wrapper] ==== wrapper stdout END ====
[2025-12-14 09:25:40] 2025-12-14 08:25:40,285 [wrapper] ==== wrapper stderr END ====
[2025-12-14 09:25:40]  *** Error codes and diagnostics ***
[2025-12-14 09:25:40]     "exeErrorCode": 65,
[2025-12-14 09:25:40]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 09:25:40]     "pilotErrorCode": 1305,
[2025-12-14 09:25:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 09:25:40]  *** Listing of results directory ***
[2025-12-14 09:25:40] total 222812
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc    579449 Dec 14 02:02 pilot3.tar.gz
[2025-12-14 09:25:40] -rwx------ 1 boinc boinc     36322 Dec 14 02:05 runpilot2-wrapper.sh
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc      5112 Dec 14 02:06 queuedata.json
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc       100 Dec 14 09:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 09:25:40] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 09:21 run_atlas
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc       105 Dec 14 09:21 job.xml
[2025-12-14 09:25:40] -rw-r--r-- 2 boinc boinc 224016516 Dec 14 09:21 EVNT.47898761._000180.pool.root.1
[2025-12-14 09:25:40] -rw-r--r-- 2 boinc boinc    592400 Dec 14 09:21 input.tar.gz
[2025-12-14 09:25:40] -rw-r--r-- 2 boinc boinc     15847 Dec 14 09:21 start_atlas.sh
[2025-12-14 09:25:40] drwxrwx--x 2 boinc boinc      4096 Dec 14 09:21 shared
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc         0 Dec 14 09:21 boinc_setup_complete
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc      6368 Dec 14 09:21 init_data.xml
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc         0 Dec 14 09:21 boinc_lockfile
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc      2505 Dec 14 09:21 pandaJob.out
[2025-12-14 09:25:40] -rw------- 1 boinc boinc    991728 Dec 14 09:21 agis_schedconf.cvmfs.json
[2025-12-14 09:25:40] -rw------- 1 boinc boinc   1516240 Dec 14 09:21 agis_ddmendpoints.agis.ALL.json
[2025-12-14 09:25:40] drwx------ 5 boinc boinc      4096 Dec 14 09:21 pilot3
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc       523 Dec 14 09:22 boinc_task_state.xml
[2025-12-14 09:25:40] -rw------- 1 boinc boinc       948 Dec 14 09:22 memory_monitor_summary.json
[2025-12-14 09:25:40] -rw------- 1 boinc boinc     33954 Dec 14 09:22 log.47898763._007624.job.log.tgz.1
[2025-12-14 09:25:40] -rw------- 1 boinc boinc        95 Dec 14 09:24 pilot_heartbeat.json
[2025-12-14 09:25:40] -rw------- 1 boinc boinc      8350 Dec 14 09:24 heartbeat.json
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc      8192 Dec 14 09:25 boinc_mmap_file
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc        23 Dec 14 09:25 wrapper_checkpoint.txt
[2025-12-14 09:25:40] -rw------- 1 boinc boinc      4752 Dec 14 09:25 pilotlog.txt
[2025-12-14 09:25:40] -rw------- 1 boinc boinc     85017 Dec 14 09:25 log.47898763._007624.job.log.1
[2025-12-14 09:25:40] -rw------- 1 boinc boinc       188 Dec 14 09:25 output.list
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc       620 Dec 14 09:25 runtime_log
[2025-12-14 09:25:40] -rw------- 1 boinc boinc    143360 Dec 14 09:25 result.tar.gz
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc      8744 Dec 14 09:25 runtime_log.err
[2025-12-14 09:25:40] -rw------- 1 boinc boinc       648 Dec 14 09:25 hYGODmijpo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfgUKDmvtfVfm.diag
[2025-12-14 09:25:40] -rw-r--r-- 1 boinc boinc      8081 Dec 14 09:25 stderr.txt
[2025-12-14 09:25:40] No HITS result produced
[2025-12-14 09:25:40]  *** Contents of shared directory: ***
[2025-12-14 09:25:40] total 219508
[2025-12-14 09:25:40] -rw-r--r-- 2 boinc boinc 224016516 Dec 14 09:21 ATLAS.root_0
[2025-12-14 09:25:40] -rw-r--r-- 2 boinc boinc    592400 Dec 14 09:21 input.tar.gz
[2025-12-14 09:25:40] -rw-r--r-- 2 boinc boinc     15847 Dec 14 09:21 start_atlas.sh
[2025-12-14 09:25:40] -rw------- 1 boinc boinc    143360 Dec 14 09:25 result.tar.gz
09:25:41 (1155108): run_atlas exited; CPU time 28.406966
09:25:41 (1155108): called boinc_finish(0)

</stderr_txt>
]]>

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