Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:51:47 (28583): wrapper (7.7.26015): starting
02:51:47 (28583): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 02:51:47] Arguments: --nthreads 12
[2025-12-14 02:51:47] Threads: 12
[2025-12-14 02:51:47] Checking for CVMFS
[2025-12-14 02:51:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 02:51:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 02:51:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 02:51:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 02:51:48] 2.11.2.0 2925 313325 97976 153988 2 59 16838892 20275200 1 130560 1 138808804 99.967 18195131 15181 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 02:51:48] CVMFS is ok
[2025-12-14 02:51:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 02:51:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 02:51:48] Further information can be found at the LHC@home message board.
[2025-12-14 02:51:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 02:51:48] Checking for apptainer binary...
[2025-12-14 02:51:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 02:51:48] Running /usr/bin/apptainer --version
[2025-12-14 02:51:48] apptainer version 1.3.2-1.el7
[2025-12-14 02:51:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 02:51:49] c-205-9.aglt2.org
[2025-12-14 02:51:49] apptainer works
[2025-12-14 02:51:49] Set ATHENA_PROC_NUMBER=12
[2025-12-14 02:51:49] Set ATHENA_CORE_NUMBER=12
[2025-12-14 02:51:49] Starting ATLAS job with PandaID=6929364846
[2025-12-14 02:51:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 04:33:19]  *** The last 200 lines of the pilot log: ***
[2025-12-14 04:33:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 04:33:19]  replicas=None
[2025-12-14 04:33:19]  scope=mc23_13p6TeV
[2025-12-14 04:33:19]  status=None
[2025-12-14 04:33:19]  status_code=0
[2025-12-14 04:33:19]  storage_token=
[2025-12-14 04:33:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929364846/log.47898763._007412.job.log.tgz.1
[2025-12-14 04:33:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/8c/log.47898763._007412.job.log.tgz.1
[2025-12-14 04:33:19]  workdir=None
[2025-12-14 04:33:19] ]
[2025-12-14 04:33:19] 2025-12-14 09:32:22,652 | INFO     | transferring file log.47898763._007412.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929364846/log.47898763._007412.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 04:33:19] 2025-12-14 09:32:22,653 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929364846/log.47898763._007412.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._007412.job
[2025-12-14 04:33:19] 2025-12-14 09:32:22,689 | INFO     | adding to output.list: log.47898763._007412.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/8c/log.47898763._007412.job.log.tg
[2025-12-14 04:33:19] 2025-12-14 09:32:22,689 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 04:33:19] 2025-12-14 09:32:22,690 | INFO     | summary of transferred files:
[2025-12-14 04:33:19] 2025-12-14 09:32:22,690 | INFO     |  -- lfn=log.47898763._007412.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 04:33:19] 2025-12-14 09:32:22,690 | INFO     | stage-out finished correctly
[2025-12-14 04:33:19] 2025-12-14 09:32:22,817 | INFO     | time since job start (6018s) is within the limit (174528.0s)
[2025-12-14 04:33:19] 2025-12-14 09:32:22,880 | INFO     | monitor loop #444: job 0:6929364846 is in state 'finished'
[2025-12-14 04:33:19] 2025-12-14 09:32:22,881 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 04:33:19] 2025-12-14 09:32:23,308 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 04:33:19] 2025-12-14 09:32:23,393 | INFO     | job 6929364846 has state=finished
[2025-12-14 04:33:19] 2025-12-14 09:32:23,393 | INFO     | preparing for final server update for job 6929364846 in state='finished'
[2025-12-14 04:33:19] 2025-12-14 09:32:23,394 | INFO     | this job has now completed (state=finished)
[2025-12-14 04:33:19] 2025-12-14 09:32:23,395 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 04:33:19] 2025-12-14 09:32:23,395 | INFO     | log transfer has been attempted: DONE
[2025-12-14 04:33:19] 2025-12-14 09:32:23,395 | INFO     | job 6929364846 has finished - writing final server update
[2025-12-14 04:33:19] 2025-12-14 09:32:23,396 | INFO     | total number of processed events: 400 (read)
[2025-12-14 04:33:19] 2025-12-14 09:32:23,397 | INFO     | executing command: lscpu
[2025-12-14 04:33:19] 2025-12-14 09:32:23,424 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 04:33:19] 2025-12-14 09:32:24,823 | INFO     | time since job start (6020s) is within the limit (174528.0s)
[2025-12-14 04:33:19] 2025-12-14 09:32:25,384 | INFO     | monitor loop #445: job 0:6929364846 is in state 'finished'
[2025-12-14 04:33:19] 2025-12-14 09:32:25,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 04:33:19] 2025-12-14 09:32:26,830 | INFO     | time since job start (6022s) is within the limit (174528.0s)
[2025-12-14 04:33:19] 2025-12-14 09:32:27,887 | INFO     | monitor loop #446: job 0:6929364846 is in state 'finished'
[2025-12-14 04:33:19] 2025-12-14 09:32:27,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 04:33:19] 2025-12-14 09:32:27,953 | INFO     | PID=32256 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 04:33:19] 2025-12-14 09:32:28,954 | INFO     | time since job start (6024s) is within the limit (174528.0s)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,364 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 04:33:19] 2025-12-14 09:32:29,367 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-14 04:33:19] 2025-12-14 09:32:29,369 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929364846/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,370 | INFO     | extracted standard info from prmon json
[2025-12-14 04:33:19] 2025-12-14 09:32:29,370 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 04:33:19] 2025-12-14 09:32:29,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 04:33:19] 2025-12-14 09:32:29,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 04:33:19] 2025-12-14 09:32:29,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 04:33:19] 2025-12-14 09:32:29,373 | INFO     | fitting pss+swap vs Time
[2025-12-14 04:33:19] 2025-12-14 09:32:29,373 | INFO     | sum of square deviations: 241429643.0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,373 | INFO     | sum of deviations: -11322735332.0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,373 | INFO     | mean x: 1765701834.5
[2025-12-14 04:33:19] 2025-12-14 09:32:29,373 | INFO     | mean y: 2738703.5217391304
[2025-12-14 04:33:19] 2025-12-14 09:32:29,374 | INFO     | intersect: 82811851531.76863
[2025-12-14 04:33:19] 2025-12-14 09:32:29,374 | INFO     | chi2: 0.10296932418588162
[2025-12-14 04:33:19] 2025-12-14 09:32:29,374 | INFO     | current memory leak: -46.90 B/s (using 92 data points, chi2=0.10)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,374 | INFO     | could have reported an average CPU frequency of 2120 MHz (7 samples)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,374 | INFO     | ..............................
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . Timing measurements:
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . get job = 0 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . initial setup = 2 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . payload setup = 7 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . stage-in = 0 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . payload execution = 5990 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . stage-out = 0 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | . log creation = 0 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,375 | INFO     | ..............................
[2025-12-14 04:33:19] 2025-12-14 09:32:29,455 | INFO     | 
[2025-12-14 04:33:19] 2025-12-14 09:32:29,455 | INFO     | job summary report
[2025-12-14 04:33:19] 2025-12-14 09:32:29,455 | INFO     | --------------------------------------------------
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | PanDA job id: 6929364846
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | task id: 47898763
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | errors: (none)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | pilot state: finished 
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | transexitcode: 0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | exeerrorcode: 0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,456 | INFO     | exeerrordiag: 
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | exitcode: 0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | exitmsg: OK
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | cpuconsumptiontime: 66155 s
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | nevents: 400
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | neventsw: 0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | pid: 6400
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | pgrp: 6400
[2025-12-14 04:33:19] 2025-12-14 09:32:29,457 | INFO     | corecount: 12
[2025-12-14 04:33:19] 2025-12-14 09:32:29,458 | INFO     | event service: False
[2025-12-14 04:33:19] 2025-12-14 09:32:29,458 | INFO     | sizes: {0: 2283953, 1: 2283953, 5: 2284243, 11: 2284299, 6001: 2311018, 6002: 2320200, 6009: 2320338}
[2025-12-14 04:33:19] 2025-12-14 09:32:29,458 | INFO     | --------------------------------------------------
[2025-12-14 04:33:19] 2025-12-14 09:32:29,458 | INFO     | 
[2025-12-14 04:33:19] 2025-12-14 09:32:29,458 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 04:33:19] 2025-12-14 09:32:29,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,483 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,483 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 04:33:19] 2025-12-14 09:32:29,486 | INFO     | job 6929364846 has completed (purged errors)
[2025-12-14 04:33:19] 2025-12-14 09:32:29,487 | INFO     | overall cleanup function is called
[2025-12-14 04:33:19] 2025-12-14 09:32:30,495 | INFO     | --- collectZombieJob: --- 10, [6400]
[2025-12-14 04:33:19] 2025-12-14 09:32:30,495 | INFO     | zombie collector waiting for pid 6400
[2025-12-14 04:33:19] 2025-12-14 09:32:30,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 04:33:19] 2025-12-14 09:32:30,495 | INFO     | collected zombie processes
[2025-12-14 04:33:19] 2025-12-14 09:32:30,496 | INFO     | will attempt to kill all subprocesses of pid=6400
[2025-12-14 04:33:19] 2025-12-14 09:32:30,585 | INFO     | process IDs to be killed: [6400] (in reverse order)
[2025-12-14 04:33:19] 2025-12-14 09:32:30,639 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 04:33:19] 2025-12-14 09:32:30,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 04:33:19] 2025-12-14 09:32:30,643 | INFO     | did not find any defunct processes belonging to 6400
[2025-12-14 04:33:19] 2025-12-14 09:32:30,647 | INFO     | did not find any defunct processes belonging to 6400
[2025-12-14 04:33:19] 2025-12-14 09:32:30,647 | INFO     | ready for new job
[2025-12-14 04:33:19] 2025-12-14 09:32:30,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 04:33:19] 2025-12-14 09:32:30,649 | INFO     | ***************************************
[2025-12-14 04:33:19] 2025-12-14 09:32:30,649 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 04:33:19] 2025-12-14 09:32:30,650 | INFO     | ***************************************
[2025-12-14 04:33:19] 2025-12-14 09:32:30,650 | INFO     | 
[2025-12-14 04:33:19] 2025-12-14 09:32:30,650 | INFO     | architecture information:
[2025-12-14 04:33:19] 2025-12-14 09:32:30,651 | INFO     | executing command: cat /etc/os-release
[2025-12-14 04:33:19] 2025-12-14 09:32:30,667 | INFO     | cat /etc/os-release:
[2025-12-14 04:33:19] NAME="CentOS Linux"
[2025-12-14 04:33:19] VERSION="7 (Core)"
[2025-12-14 04:33:19] ID="centos"
[2025-12-14 04:33:19] ID_LIKE="rhel fedora"
[2025-12-14 04:33:19] VERSION_ID="7"
[2025-12-14 04:33:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 04:33:19] ANSI_COLOR="0;31"
[2025-12-14 04:33:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 04:33:19] HOME_URL="https://www.centos.org/"
[2025-12-14 04:33:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 04:33:19] 
[2025-12-14 04:33:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 04:33:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 04:33:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 04:33:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 04:33:19] 
[2025-12-14 04:33:19] 2025-12-14 09:32:30,667 | INFO     | ***************************************
[2025-12-14 04:33:19] 2025-12-14 09:32:31,170 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 04:33:19] 2025-12-14 09:32:31,188 | INFO     | sufficient remaining disk space (29319233536 B)
[2025-12-14 04:33:19] 2025-12-14 09:32:31,189 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 04:33:19] 2025-12-14 09:32:31,189 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 04:33:19] 2025-12-14 09:32:31,189 | INFO     | update_server=False
[2025-12-14 04:33:19] 2025-12-14 09:32:31,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 04:33:19] 2025-12-14 09:32:31,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 04:33:19] 2025-12-14 09:32:31,190 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 04:33:19] 2025-12-14 09:32:31,408 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 04:33:19] 2025-12-14 09:32:31,408 | INFO     | aborting loop
[2025-12-14 04:33:19] 2025-12-14 09:32:31,555 | INFO     | all job control threads have been joined
[2025-12-14 04:33:19] 2025-12-14 09:32:32,039 | INFO     | all data control threads have been joined
[2025-12-14 04:33:19] 2025-12-14 09:32:32,195 | INFO     | [job] retrieve thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,196 | INFO     | [job] queue monitor thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,282 | INFO     | all payload control threads have been joined
[2025-12-14 04:33:19] 2025-12-14 09:32:32,306 | INFO     | [data] copytool_in thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,359 | INFO     | [payload] validate_post thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,414 | INFO     | [job] job monitor thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,561 | INFO     | [job] control thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,818 | INFO     | [payload] failed_post thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,916 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:32,917 | INFO     | [job] validate thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:33,045 | INFO     | [data] control thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:33,186 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:33,194 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:33,195 | INFO     | [data] copytool_out thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:33,287 | INFO     | [payload] control thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:33,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 04:33:19] 2025-12-14 09:32:37,918 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:32:41,658 | INFO     | job.realtimelogging is not enabled
[2025-12-14 04:33:19] 2025-12-14 09:32:42,663 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 04:33:19] 2025-12-14 09:33:02,159 | INFO     | PID=32256 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 04:33:19] 2025-12-14 09:33:02,159 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 04:33:19] 2025-12-14 09:33:02,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 04:33:19] 2025-12-14 09:33:02,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 04:33:19] 2025-12-14 09:33:14,001 | INFO     | [monitor] cgroup control has ended
[2025-12-14 04:33:19] 2025-12-14 09:33:14,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139624340240192)>', '<ExcThread(monitor, started 139623481210624)>']
[2025-12-14 04:33:19] 2025-12-14 09:33:14,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 04:33:19] 2025-12-14 09:33:14,215 | INFO     | [monitor] control thread has ended
[2025-12-14 04:33:19] 2025-12-14 09:33:19,066 | INFO     | all workflow threads have been joined
[2025-12-14 04:33:19] 2025-12-14 09:33:19,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 04:33:19] 2025-12-14 09:33:19,076 | INFO     | traces error code: 0
[2025-12-14 04:33:19] 2025-12-14 09:33:19,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 04:33:19] 2025-12-14 09:33:19,179 [wrapper] ==== pilot stdout END ====
[2025-12-14 04:33:19] 2025-12-14 09:33:19,182 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 04:33:19] 2025-12-14 09:33:19,186 [wrapper] pilotpid: 32256
[2025-12-14 04:33:19] 2025-12-14 09:33:19,189 [wrapper] Pilot exit status: 0
[2025-12-14 04:33:19] 2025-12-14 09:33:19,204 [wrapper] pandaids: 6929364846
[2025-12-14 04:33:19] 2025-12-14 09:33:19,251 [wrapper] cleanup supervisor_pilot  5830 32257
[2025-12-14 04:33:19] 2025-12-14 09:33:19,254 [wrapper] Test setup, not cleaning
[2025-12-14 04:33:19] 2025-12-14 09:33:19,258 [wrapper] apfmon messages muted
[2025-12-14 04:33:19] 2025-12-14 09:33:19,262 [wrapper] ==== wrapper stdout END ====
[2025-12-14 04:33:19] 2025-12-14 09:33:19,266 [wrapper] ==== wrapper stderr END ====
[2025-12-14 04:33:19]  *** Error codes and diagnostics ***
[2025-12-14 04:33:19]     "exeErrorCode": 0,
[2025-12-14 04:33:19]     "exeErrorDiag": "",
[2025-12-14 04:33:19]     "pilotErrorCode": 0,
[2025-12-14 04:33:19]     "pilotErrorDiag": "",
[2025-12-14 04:33:19]  *** Listing of results directory ***
[2025-12-14 04:33:19] total 438500
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 20:02 pilot3.tar.gz
[2025-12-14 04:33:19] -rwx------ 1 boincer umatlas     36322 Dec 13 20:05 runpilot2-wrapper.sh
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 20:06 queuedata.json
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas       100 Dec 14 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 04:33:19] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 02:51 run_atlas
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas       105 Dec 14 02:51 job.xml
[2025-12-14 04:33:19] -rw-r--r-- 2 boincer umatlas 224789964 Dec 14 02:51 EVNT.47898761._000172.pool.root.1
[2025-12-14 04:33:19] -rw-r--r-- 2 boincer umatlas    592394 Dec 14 02:51 input.tar.gz
[2025-12-14 04:33:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 02:51 start_atlas.sh
[2025-12-14 04:33:19] drwxrwx--x 2 boincer umatlas      4096 Dec 14 02:51 shared
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas         0 Dec 14 02:51 boinc_lockfile
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas      2505 Dec 14 02:51 pandaJob.out
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas        57 Dec 14 02:51 setup.sh.local
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas    991728 Dec 14 02:52 agis_schedconf.cvmfs.json
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas   1516240 Dec 14 02:52 agis_ddmendpoints.agis.ALL.json
[2025-12-14 04:33:19] drwx------ 5 boincer umatlas      4096 Dec 14 02:52 pilot3
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 04:29 init_data.xml
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas 217794022 Dec 14 04:31 HITS.47898763._007412.pool.root.1
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas       529 Dec 14 04:31 boinc_task_state.xml
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas      1047 Dec 14 04:32 memory_monitor_summary.json
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas    402652 Dec 14 04:32 log.47898763._007412.job.log.tgz.1
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas        95 Dec 14 04:32 pilot_heartbeat.json
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas      7845 Dec 14 04:32 heartbeat.json
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 04:33 boinc_mmap_file
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas        27 Dec 14 04:33 wrapper_checkpoint.txt
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas      4818 Dec 14 04:33 pilotlog.txt
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas    854364 Dec 14 04:33 log.47898763._007412.job.log.1
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas       357 Dec 14 04:33 output.list
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas       620 Dec 14 04:33 runtime_log
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas   1280000 Dec 14 04:33 result.tar.gz
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas       658 Dec 14 04:33 ZDPLDmhjpo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiVQKDmqOYezn.diag
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas      9339 Dec 14 04:33 runtime_log.err
[2025-12-14 04:33:19] -rw-r--r-- 1 boincer umatlas     21996 Dec 14 04:33 stderr.txt
[2025-12-14 04:33:19] HITS file was successfully produced:
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas 217794022 Dec 14 04:31 shared/HITS.pool.root.1
[2025-12-14 04:33:19]  *** Contents of shared directory: ***
[2025-12-14 04:33:19] total 434068
[2025-12-14 04:33:19] -rw-r--r-- 2 boincer umatlas 224789964 Dec 14 02:51 ATLAS.root_0
[2025-12-14 04:33:19] -rw-r--r-- 2 boincer umatlas    592394 Dec 14 02:51 input.tar.gz
[2025-12-14 04:33:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 02:51 start_atlas.sh
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas 217794022 Dec 14 04:31 HITS.pool.root.1
[2025-12-14 04:33:19] -rw------- 1 boincer umatlas   1280000 Dec 14 04:33 result.tar.gz
04:33:20 (28583): run_atlas exited; CPU time 66135.695475
04:33:20 (28583): called boinc_finish(0)

</stderr_txt>
]]>

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