Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:58:19 (13065): wrapper (7.7.26015): starting
01:58:19 (13065): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 01:58:19] Arguments: --nthreads 12
[2025-12-14 01:58:19] Threads: 12
[2025-12-14 01:58:19] Checking for CVMFS
[2025-12-14 01:58:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 01:58:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 01:58:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 01:58:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 01:58:19] 2.11.2.0 3103 103247 99328 153986 2 57 16580260 20275201 1 130560 0 44927081 99.929 5421804 33031 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 01:58:19] CVMFS is ok
[2025-12-14 01:58:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 01:58:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 01:58:19] Further information can be found at the LHC@home message board.
[2025-12-14 01:58:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 01:58:19] Checking for apptainer binary...
[2025-12-14 01:58:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 01:58:19] Running /usr/bin/apptainer --version
[2025-12-14 01:58:19] apptainer version 1.3.2-1.el7
[2025-12-14 01:58:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 01:58:21] c-115-41.aglt2.org
[2025-12-14 01:58:21] apptainer works
[2025-12-14 01:58:21] Set ATHENA_PROC_NUMBER=12
[2025-12-14 01:58:21] Set ATHENA_CORE_NUMBER=12
[2025-12-14 01:58:21] Starting ATLAS job with PandaID=6929365479
[2025-12-14 01:58:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 03:32:10]  *** The last 200 lines of the pilot log: ***
[2025-12-14 03:32:10]  mtime=0
[2025-12-14 03:32:10]  protocol_id=None
[2025-12-14 03:32:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 03:32:10]  replicas=None
[2025-12-14 03:32:10]  scope=mc23_13p6TeV
[2025-12-14 03:32:10]  status=None
[2025-12-14 03:32:10]  status_code=0
[2025-12-14 03:32:10]  storage_token=
[2025-12-14 03:32:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929365479/log.47898763._007623.job.log.tgz.1
[2025-12-14 03:32:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/e1/log.47898763._007623.job.log.tgz.1
[2025-12-14 03:32:10]  workdir=None
[2025-12-14 03:32:10] ]
[2025-12-14 03:32:10] 2025-12-14 08:31:30,548 | INFO     | transferring file log.47898763._007623.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929365479/log.47898763._007623.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 03:32:10] 2025-12-14 08:31:30,548 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929365479/log.47898763._007623.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._007623.job
[2025-12-14 03:32:10] 2025-12-14 08:31:30,571 | INFO     | adding to output.list: log.47898763._007623.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/e1/log.47898763._007623.job.log.tg
[2025-12-14 03:32:10] 2025-12-14 08:31:30,571 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 03:32:10] 2025-12-14 08:31:30,572 | INFO     | summary of transferred files:
[2025-12-14 03:32:10] 2025-12-14 08:31:30,572 | INFO     |  -- lfn=log.47898763._007623.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 03:32:10] 2025-12-14 08:31:30,572 | INFO     | stage-out finished correctly
[2025-12-14 03:32:10] 2025-12-14 08:31:31,052 | INFO     | time since job start (5576s) is within the limit (174528.0s)
[2025-12-14 03:32:10] 2025-12-14 08:31:31,473 | INFO     | monitor loop #418: job 0:6929365479 is in state 'finished'
[2025-12-14 03:32:10] 2025-12-14 08:31:31,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 03:32:10] 2025-12-14 08:31:32,285 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 03:32:10] 2025-12-14 08:31:33,054 | INFO     | time since job start (5578s) is within the limit (174528.0s)
[2025-12-14 03:32:10] 2025-12-14 08:31:33,473 | INFO     | job 6929365479 has state=finished
[2025-12-14 03:32:10] 2025-12-14 08:31:33,473 | INFO     | preparing for final server update for job 6929365479 in state='finished'
[2025-12-14 03:32:10] 2025-12-14 08:31:33,474 | INFO     | this job has now completed (state=finished)
[2025-12-14 03:32:10] 2025-12-14 08:31:33,474 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 03:32:10] 2025-12-14 08:31:33,474 | INFO     | log transfer has been attempted: DONE
[2025-12-14 03:32:10] 2025-12-14 08:31:33,474 | INFO     | job 6929365479 has finished - writing final server update
[2025-12-14 03:32:10] 2025-12-14 08:31:33,475 | INFO     | total number of processed events: 400 (read)
[2025-12-14 03:32:10] 2025-12-14 08:31:33,476 | INFO     | executing command: lscpu
[2025-12-14 03:32:10] 2025-12-14 08:31:33,502 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 03:32:10] 2025-12-14 08:31:33,978 | INFO     | monitor loop #419: job 0:6929365479 is in state 'finished'
[2025-12-14 03:32:10] 2025-12-14 08:31:33,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 03:32:10] 2025-12-14 08:31:35,060 | INFO     | time since job start (5580s) is within the limit (174528.0s)
[2025-12-14 03:32:10] 2025-12-14 08:31:36,481 | INFO     | monitor loop #420: job 0:6929365479 is in state 'finished'
[2025-12-14 03:32:10] 2025-12-14 08:31:36,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 03:32:10] 2025-12-14 08:31:37,065 | INFO     | time since job start (5582s) is within the limit (174528.0s)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,155 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 03:32:10] 2025-12-14 08:31:38,159 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1862.1666666666667
[2025-12-14 03:32:10] 2025-12-14 08:31:38,160 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929365479/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,161 | INFO     | extracted standard info from prmon json
[2025-12-14 03:32:10] 2025-12-14 08:31:38,161 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 03:32:10] 2025-12-14 08:31:38,161 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 03:32:10] 2025-12-14 08:31:38,161 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 03:32:10] 2025-12-14 08:31:38,161 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 03:32:10] 2025-12-14 08:31:38,163 | INFO     | fitting pss+swap vs Time
[2025-12-14 03:32:10] 2025-12-14 08:31:38,163 | INFO     | sum of square deviations: 183761585.0
[2025-12-14 03:32:10] 2025-12-14 08:31:38,163 | INFO     | sum of deviations: 1775876895.9999998
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | mean x: 1765698380.5
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | mean y: 2692345.476190476
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | intersect: -17061064256.506573
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | chi2: 0.014384823935466352
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | current memory leak: 9.66 B/s (using 84 data points, chi2=0.01)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | could have reported an average CPU frequency of 2134 MHz (7 samples)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,164 | INFO     | ..............................
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . Timing measurements:
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . get job = 0 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . initial setup = 2 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . payload setup = 6 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . stage-in = 0 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . payload execution = 5547 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . stage-out = 0 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | . log creation = 0 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,165 | INFO     | ..............................
[2025-12-14 03:32:10] 2025-12-14 08:31:38,264 | INFO     | 
[2025-12-14 03:32:10] 2025-12-14 08:31:38,264 | INFO     | job summary report
[2025-12-14 03:32:10] 2025-12-14 08:31:38,264 | INFO     | --------------------------------------------------
[2025-12-14 03:32:10] 2025-12-14 08:31:38,264 | INFO     | PanDA job id: 6929365479
[2025-12-14 03:32:10] 2025-12-14 08:31:38,265 | INFO     | task id: 47898763
[2025-12-14 03:32:10] 2025-12-14 08:31:38,265 | INFO     | errors: (none)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,265 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 03:32:10] 2025-12-14 08:31:38,265 | INFO     | pilot state: finished 
[2025-12-14 03:32:10] 2025-12-14 08:31:38,265 | INFO     | transexitcode: 0
[2025-12-14 03:32:10] 2025-12-14 08:31:38,265 | INFO     | exeerrorcode: 0
[2025-12-14 03:32:10] 2025-12-14 08:31:38,266 | INFO     | exeerrordiag: 
[2025-12-14 03:32:10] 2025-12-14 08:31:38,266 | INFO     | exitcode: 0
[2025-12-14 03:32:10] 2025-12-14 08:31:38,266 | INFO     | exitmsg: OK
[2025-12-14 03:32:10] 2025-12-14 08:31:38,266 | INFO     | cpuconsumptiontime: 60811 s
[2025-12-14 03:32:10] 2025-12-14 08:31:38,266 | INFO     | nevents: 400
[2025-12-14 03:32:10] 2025-12-14 08:31:38,266 | INFO     | neventsw: 0
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | pid: 23145
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | pgrp: 23145
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | corecount: 12
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | event service: False
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | sizes: {0: 2283781, 1: 2283980, 6: 2284242, 12: 2284270, 5557: 2310852, 5558: 2310851, 5559: 2320033, 5561: 2320089, 5567: 2320283}
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | --------------------------------------------------
[2025-12-14 03:32:10] 2025-12-14 08:31:38,267 | INFO     | 
[2025-12-14 03:32:10] 2025-12-14 08:31:38,268 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 03:32:10] 2025-12-14 08:31:38,292 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,295 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 03:32:10] 2025-12-14 08:31:38,296 | INFO     | job 6929365479 has completed (purged errors)
[2025-12-14 03:32:10] 2025-12-14 08:31:38,296 | INFO     | overall cleanup function is called
[2025-12-14 03:32:10] 2025-12-14 08:31:39,304 | INFO     | --- collectZombieJob: --- 10, [23145]
[2025-12-14 03:32:10] 2025-12-14 08:31:39,304 | INFO     | zombie collector waiting for pid 23145
[2025-12-14 03:32:10] 2025-12-14 08:31:39,304 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 03:32:10] 2025-12-14 08:31:39,305 | INFO     | collected zombie processes
[2025-12-14 03:32:10] 2025-12-14 08:31:39,305 | INFO     | will attempt to kill all subprocesses of pid=23145
[2025-12-14 03:32:10] 2025-12-14 08:31:39,395 | INFO     | process IDs to be killed: [23145] (in reverse order)
[2025-12-14 03:32:10] 2025-12-14 08:31:39,447 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 03:32:10] 2025-12-14 08:31:39,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 03:32:10] 2025-12-14 08:31:39,451 | INFO     | did not find any defunct processes belonging to 23145
[2025-12-14 03:32:10] 2025-12-14 08:31:39,453 | INFO     | did not find any defunct processes belonging to 23145
[2025-12-14 03:32:10] 2025-12-14 08:31:39,453 | INFO     | ready for new job
[2025-12-14 03:32:10] 2025-12-14 08:31:39,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 03:32:10] 2025-12-14 08:31:39,454 | INFO     | ***************************************
[2025-12-14 03:32:10] 2025-12-14 08:31:39,454 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 03:32:10] 2025-12-14 08:31:39,454 | INFO     | ***************************************
[2025-12-14 03:32:10] 2025-12-14 08:31:39,454 | INFO     | 
[2025-12-14 03:32:10] 2025-12-14 08:31:39,455 | INFO     | architecture information:
[2025-12-14 03:32:10] 2025-12-14 08:31:39,455 | INFO     | executing command: cat /etc/os-release
[2025-12-14 03:32:10] 2025-12-14 08:31:39,470 | INFO     | cat /etc/os-release:
[2025-12-14 03:32:10] NAME="CentOS Linux"
[2025-12-14 03:32:10] VERSION="7 (Core)"
[2025-12-14 03:32:10] ID="centos"
[2025-12-14 03:32:10] ID_LIKE="rhel fedora"
[2025-12-14 03:32:10] VERSION_ID="7"
[2025-12-14 03:32:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 03:32:10] ANSI_COLOR="0;31"
[2025-12-14 03:32:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 03:32:10] HOME_URL="https://www.centos.org/"
[2025-12-14 03:32:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 03:32:10] 
[2025-12-14 03:32:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 03:32:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 03:32:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 03:32:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 03:32:10] 
[2025-12-14 03:32:10] 2025-12-14 08:31:39,470 | INFO     | ***************************************
[2025-12-14 03:32:10] 2025-12-14 08:31:39,973 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 03:32:10] 2025-12-14 08:31:39,991 | INFO     | sufficient remaining disk space (18541969408 B)
[2025-12-14 03:32:10] 2025-12-14 08:31:39,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 03:32:10] 2025-12-14 08:31:39,992 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 03:32:10] 2025-12-14 08:31:39,992 | INFO     | update_server=False
[2025-12-14 03:32:10] 2025-12-14 08:31:39,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 03:32:10] 2025-12-14 08:31:39,992 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 03:32:10] 2025-12-14 08:31:39,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 03:32:10] 2025-12-14 08:31:39,993 | INFO     | aborting loop
[2025-12-14 03:32:10] 2025-12-14 08:31:40,696 | INFO     | all payload control threads have been joined
[2025-12-14 03:32:10] 2025-12-14 08:31:40,897 | INFO     | all data control threads have been joined
[2025-12-14 03:32:10] 2025-12-14 08:31:40,998 | INFO     | [job] retrieve thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:40,998 | INFO     | [job] queue monitor thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:40,999 | INFO     | [job] job monitor thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 03:32:10] 2025-12-14 08:31:41,228 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,234 | INFO     | [job] validate thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,341 | INFO     | [payload] failed_post thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,396 | INFO     | all job control threads have been joined
[2025-12-14 03:32:10] 2025-12-14 08:31:41,636 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,702 | INFO     | [payload] control thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,784 | INFO     | [data] copytool_in thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,899 | INFO     | [data] control thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:41,932 | INFO     | [payload] validate_post thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:42,128 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:42,401 | INFO     | [job] control thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:42,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 03:32:10] 2025-12-14 08:31:43,168 | INFO     | [data] copytool_out thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:44,403 | INFO     | [monitor] cgroup control has ended
[2025-12-14 03:32:10] 2025-12-14 08:31:46,871 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 03:32:10] 2025-12-14 08:31:47,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139757629376320)>', '<ExcThread(monitor, started 139756826523392)>']
[2025-12-14 03:32:10] 2025-12-14 08:31:52,809 | INFO     | all workflow threads have been joined
[2025-12-14 03:32:10] 2025-12-14 08:31:52,809 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 03:32:10] 2025-12-14 08:31:52,810 | INFO     | traces error code: 0
[2025-12-14 03:32:10] 2025-12-14 08:31:52,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 03:32:10] 2025-12-14 08:32:10,263 | INFO     | PID=16759 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 03:32:10] 2025-12-14 08:32:10,264 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 03:32:10] 2025-12-14 08:32:10,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 03:32:10] 2025-12-14 08:32:10,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 03:32:10] 2025-12-14 08:32:10,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 03:32:10] 2025-12-14 08:32:10,265 | INFO     | [monitor] control thread has ended
[2025-12-14 03:32:10] 2025-12-14 08:32:10,358 [wrapper] ==== pilot stdout END ====
[2025-12-14 03:32:10] 2025-12-14 08:32:10,361 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 03:32:10] 2025-12-14 08:32:10,365 [wrapper] pilotpid: 16759
[2025-12-14 03:32:10] 2025-12-14 08:32:10,368 [wrapper] Pilot exit status: 0
[2025-12-14 03:32:10] 2025-12-14 08:32:10,384 [wrapper] pandaids: 6929365479
[2025-12-14 03:32:10] 2025-12-14 08:32:10,425 [wrapper] cleanup supervisor_pilot  1238 16760
[2025-12-14 03:32:10] 2025-12-14 08:32:10,429 [wrapper] Test setup, not cleaning
[2025-12-14 03:32:10] 2025-12-14 08:32:10,433 [wrapper] apfmon messages muted
[2025-12-14 03:32:10] 2025-12-14 08:32:10,437 [wrapper] ==== wrapper stdout END ====
[2025-12-14 03:32:10] 2025-12-14 08:32:10,441 [wrapper] ==== wrapper stderr END ====
[2025-12-14 03:32:10]  *** Error codes and diagnostics ***
[2025-12-14 03:32:10]     "exeErrorCode": 0,
[2025-12-14 03:32:10]     "exeErrorDiag": "",
[2025-12-14 03:32:10]     "pilotErrorCode": 0,
[2025-12-14 03:32:10]     "pilotErrorDiag": "",
[2025-12-14 03:32:10]  *** Listing of results directory ***
[2025-12-14 03:32:10] total 435708
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 20:02 queuedata.json
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 20:02 pilot3.tar.gz
[2025-12-14 03:32:10] -rwx------ 1 boincer umatlas     36322 Dec 13 20:02 runpilot2-wrapper.sh
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas       100 Dec 14 01:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 03:32:10] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 01:58 run_atlas
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas       105 Dec 14 01:58 job.xml
[2025-12-14 03:32:10] -rw-r--r-- 2 boincer umatlas 224016516 Dec 14 01:58 EVNT.47898761._000180.pool.root.1
[2025-12-14 03:32:10] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 01:58 start_atlas.sh
[2025-12-14 03:32:10] drwxrwx--x 2 boincer umatlas      4096 Dec 14 01:58 shared
[2025-12-14 03:32:10] -rw-r--r-- 2 boincer umatlas    592396 Dec 14 01:58 input.tar.gz
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas         0 Dec 14 01:58 boinc_lockfile
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas      2504 Dec 14 01:58 pandaJob.out
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas        57 Dec 14 01:58 setup.sh.local
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas    991736 Dec 14 01:58 agis_schedconf.cvmfs.json
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas   1516240 Dec 14 01:58 agis_ddmendpoints.agis.ALL.json
[2025-12-14 03:32:10] drwx------ 5 boincer umatlas      4096 Dec 14 01:58 pilot3
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas 215810195 Dec 14 03:30 HITS.47898763._007623.pool.root.1
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas       529 Dec 14 03:31 boinc_task_state.xml
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas      1046 Dec 14 03:31 memory_monitor_summary.json
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas    409944 Dec 14 03:31 log.47898763._007623.job.log.tgz.1
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas      5954 Dec 14 03:31 init_data.xml
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas      7842 Dec 14 03:31 heartbeat.json
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas        27 Dec 14 03:32 wrapper_checkpoint.txt
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 03:32 boinc_mmap_file
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas       745 Dec 14 03:32 pilotlog.txt
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas        95 Dec 14 03:32 pilot_heartbeat.json
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas    801873 Dec 14 03:32 log.47898763._007623.job.log.1
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas       357 Dec 14 03:32 output.list
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas       620 Dec 14 03:32 runtime_log
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas   1228800 Dec 14 03:32 result.tar.gz
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas       659 Dec 14 03:32 yd9NDmRgpo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDWUKDmv918vn.diag
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 03:32 runtime_log.err
[2025-12-14 03:32:10] -rw-r--r-- 1 boincer umatlas     21791 Dec 14 03:32 stderr.txt
[2025-12-14 03:32:10] HITS file was successfully produced:
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas 215810195 Dec 14 03:30 shared/HITS.pool.root.1
[2025-12-14 03:32:10]  *** Contents of shared directory: ***
[2025-12-14 03:32:10] total 431324
[2025-12-14 03:32:10] -rw-r--r-- 2 boincer umatlas 224016516 Dec 14 01:58 ATLAS.root_0
[2025-12-14 03:32:10] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 01:58 start_atlas.sh
[2025-12-14 03:32:10] -rw-r--r-- 2 boincer umatlas    592396 Dec 14 01:58 input.tar.gz
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas 215810195 Dec 14 03:30 HITS.pool.root.1
[2025-12-14 03:32:10] -rw------- 1 boincer umatlas   1228800 Dec 14 03:32 result.tar.gz
03:32:12 (13065): run_atlas exited; CPU time 60774.157536
03:32:12 (13065): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN