Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:04:28 (836225): wrapper (7.7.26015): starting
03:04:28 (836225): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 03:04:28] Arguments: --nthreads 8
[2025-12-14 03:04:28] Threads: 8
[2025-12-14 03:04:28] Checking for CVMFS
[2025-12-14 03:04:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 03:04:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 03:04:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 03:04:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 03:04:30] 2.13.3.0 11502 55660 229884 153988 2 645 28771373 32935937 33488 16776704 0 482672825 99.588 508303379 36074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 03:04:30] CVMFS is ok
[2025-12-14 03:04:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 03:04:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 03:04:30] Further information can be found at the LHC@home message board.
[2025-12-14 03:04:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 03:04:30] Checking for apptainer binary...
[2025-12-14 03:04:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 03:04:30] Running /usr/bin/apptainer --version
[2025-12-14 03:04:30] apptainer version 1.4.5-2.el9
[2025-12-14 03:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 03:04:31] c7-2-15.aglt2.org
[2025-12-14 03:04:31] apptainer works
[2025-12-14 03:04:31] Set ATHENA_PROC_NUMBER=8
[2025-12-14 03:04:31] Set ATHENA_CORE_NUMBER=8
[2025-12-14 03:04:31] Starting ATLAS job with PandaID=6929308248
[2025-12-14 03:04:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:48:27 (1355108): wrapper (7.7.26015): starting
04:48:27 (1355108): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 04:48:27] Arguments: --nthreads 8
[2025-12-14 04:48:27] Threads: 8
[2025-12-14 04:48:27] This job has been restarted, cleaning up previous attempt
[2025-12-14 04:48:27] Checking for CVMFS
[2025-12-14 04:48:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 04:48:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 04:48:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 04:48:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 04:48:28] 2.13.3.0 11502 55764 216100 153990 2 388 31047963 32935937 31437 16776704 0 483264563 99.589 508533763 36069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 04:48:28] CVMFS is ok
[2025-12-14 04:48:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 04:48:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 04:48:28] Further information can be found at the LHC@home message board.
[2025-12-14 04:48:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 04:48:28] Checking for apptainer binary...
[2025-12-14 04:48:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 04:48:28] Running /usr/bin/apptainer --version
[2025-12-14 04:48:28] apptainer version 1.4.5-2.el9
[2025-12-14 04:48:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 04:48:28] c7-2-15.aglt2.org
[2025-12-14 04:48:28] apptainer works
[2025-12-14 04:48:29] Set ATHENA_PROC_NUMBER=8
[2025-12-14 04:48:29] Set ATHENA_CORE_NUMBER=8
[2025-12-14 04:48:29] Starting ATLAS job with PandaID=6929308248
[2025-12-14 04:48:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 10:07:26]  *** The last 200 lines of the pilot log: ***
[2025-12-14 10:07:26] 2025-12-14 15:06:47,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,081 | INFO     | time since job start (19082s) is within the limit (174528.0s)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,190 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 10:07:26] 2025-12-14 15:06:48,196 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3019.6794270833343
[2025-12-14 10:07:26] 2025-12-14 15:06:48,213 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929308248/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,214 | INFO     | extracted standard info from prmon json
[2025-12-14 10:07:26] 2025-12-14 15:06:48,214 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 10:07:26] 2025-12-14 15:06:48,214 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 10:07:26] 2025-12-14 15:06:48,215 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 10:07:26] 2025-12-14 15:06:48,215 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 10:07:26] 2025-12-14 15:06:48,220 | INFO     | fitting pss+swap vs Time
[2025-12-14 10:07:26] 2025-12-14 15:06:48,249 | INFO     | sum of square deviations: 9417634895.073708
[2025-12-14 10:07:26] 2025-12-14 15:06:48,255 | INFO     | sum of deviations: 43827114816.16028
[2025-12-14 10:07:26] 2025-12-14 15:06:48,255 | INFO     | mean x: 1765715247.5544872
[2025-12-14 10:07:26] 2025-12-14 15:06:48,255 | INFO     | mean y: 2473511.814102564
[2025-12-14 10:07:26] 2025-12-14 15:06:48,255 | INFO     | intersect: -8214685652.818147
[2025-12-14 10:07:26] 2025-12-14 15:06:48,256 | INFO     | chi2: 2.34691086905582
[2025-12-14 10:07:26] 2025-12-14 15:06:48,256 | INFO     | sum of square deviations: 8972087540.05859
[2025-12-14 10:07:26] 2025-12-14 15:06:48,279 | INFO     | sum of deviations: 64830712635.28667
[2025-12-14 10:07:26] 2025-12-14 15:06:48,279 | INFO     | mean x: 1765715095.0553746
[2025-12-14 10:07:26] 2025-12-14 15:06:48,279 | INFO     | mean y: 2480603.1596091203
[2025-12-14 10:07:26] 2025-12-14 15:06:48,279 | INFO     | intersect: -12756263380.581697
[2025-12-14 10:07:26] 2025-12-14 15:06:48,279 | INFO     | chi2: 1.4707556520467657
[2025-12-14 10:07:26] 2025-12-14 15:06:48,280 | INFO     | current chi2=1.4707556520467657 (change=37.33227488786305 %)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,280 | INFO     | sum of square deviations: 8540781822.754952
[2025-12-14 10:07:26] 2025-12-14 15:06:48,298 | INFO     | sum of deviations: 63554117444.07289
[2025-12-14 10:07:26] 2025-12-14 15:06:48,299 | INFO     | mean x: 1765714942.5496688
[2025-12-14 10:07:26] 2025-12-14 15:06:48,299 | INFO     | mean y: 2480151.728476821
[2025-12-14 10:07:26] 2025-12-14 15:06:48,299 | INFO     | intersect: -13136651272.115622
[2025-12-14 10:07:26] 2025-12-14 15:06:48,299 | INFO     | chi2: 1.470926463540366
[2025-12-14 10:07:26] 2025-12-14 15:06:48,299 | INFO     | current chi2=1.470926463540366 (change=-0.011613859403675365 %)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,299 | INFO     | right removable region: 301
[2025-12-14 10:07:26] 2025-12-14 15:06:48,300 | INFO     | sum of square deviations: 8972077170.058588
[2025-12-14 10:07:26] 2025-12-14 15:06:48,318 | INFO     | sum of deviations: -6819434446.514652
[2025-12-14 10:07:26] 2025-12-14 15:06:48,318 | INFO     | mean x: 1765715400.0553746
[2025-12-14 10:07:26] 2025-12-14 15:06:48,318 | INFO     | mean y: 2490736.736156352
[2025-12-14 10:07:26] 2025-12-14 15:06:48,318 | INFO     | intersect: 1344563502.4567385
[2025-12-14 10:07:26] 2025-12-14 15:06:48,318 | INFO     | chi2: 0.8985475315560856
[2025-12-14 10:07:26] 2025-12-14 15:06:48,319 | INFO     | current chi2=0.8985475315560856 (change=61.71360645163409 %)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,319 | INFO     | sum of square deviations: 8540798782.54305
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | sum of deviations: -6517126287.0927105
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | mean x: 1765715552.5562913
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | mean y: 2490627.417218543
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | intersect: 1349834305.225616
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | chi2: 0.8983503863671178
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | current chi2=0.8983503863671178 (change=0.021940429642751138 %)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,321 | INFO     | left removable region: 20
[2025-12-14 10:07:26] 2025-12-14 15:06:48,322 | INFO     | sum of square deviations: 6880098882.199295
[2025-12-14 10:07:26] 2025-12-14 15:06:48,323 | INFO     | sum of deviations: 16496227906.88613
[2025-12-14 10:07:26] 2025-12-14 15:06:48,324 | INFO     | mean x: 1765715522.0533807
[2025-12-14 10:07:26] 2025-12-14 15:06:48,324 | INFO     | mean y: 2497077.5409252667
[2025-12-14 10:07:26] 2025-12-14 15:06:48,324 | INFO     | intersect: -4231111504.1438823
[2025-12-14 10:07:26] 2025-12-14 15:06:48,324 | INFO     | chi2: 0.003191427178386699
[2025-12-14 10:07:26] 2025-12-14 15:06:48,324 | INFO     | current memory leak: 2.40 B/s (using 281 data points, chi2=0.00)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | could have reported an average CPU frequency of 3063 MHz (14 samples)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | ..............................
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . Timing measurements:
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . get job = 0 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . initial setup = 1 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . payload setup = 9 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . stage-in = 0 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . payload execution = 19032 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . stage-out = 2 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | . log creation = 0 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,325 | INFO     | ..............................
[2025-12-14 10:07:26] 2025-12-14 15:06:48,385 | INFO     | 
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | job summary report
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | --------------------------------------------------
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | PanDA job id: 6929308248
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | task id: 47898836
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | errors: (none)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | pilot state: finished 
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | transexitcode: 0
[2025-12-14 10:07:26] 2025-12-14 15:06:48,402 | INFO     | exeerrorcode: 0
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | exeerrordiag: 
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | exitcode: 0
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | exitmsg: OK
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | cpuconsumptiontime: 47679 s
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | nevents: 400
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | neventsw: 0
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | pid: 1407056
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | pgrp: 1407056
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | corecount: 8
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | event service: False
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | sizes: {0: 2283177, 1: 2284033, 8: 2284295, 12: 2284323, 19044: 2317043, 19045: 2317042, 19049: 2326224, 19052: 2326280, 19063: 2326474}
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | --------------------------------------------------
[2025-12-14 10:07:26] 2025-12-14 15:06:48,403 | INFO     | 
[2025-12-14 10:07:26] 2025-12-14 15:06:48,404 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,504 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,506 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 10:07:26] 2025-12-14 15:06:48,506 | INFO     | job 6929308248 has completed (purged errors)
[2025-12-14 10:07:26] 2025-12-14 15:06:48,506 | INFO     | overall cleanup function is called
[2025-12-14 10:07:26] 2025-12-14 15:06:49,535 | INFO     | --- collectZombieJob: --- 10, [1407056]
[2025-12-14 10:07:26] 2025-12-14 15:06:49,535 | INFO     | zombie collector waiting for pid 1407056
[2025-12-14 10:07:26] 2025-12-14 15:06:49,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 10:07:26] 2025-12-14 15:06:49,535 | INFO     | collected zombie processes
[2025-12-14 10:07:26] 2025-12-14 15:06:49,535 | INFO     | will attempt to kill all subprocesses of pid=1407056
[2025-12-14 10:07:26] 2025-12-14 15:06:50,752 | INFO     | process IDs to be killed: [1407056] (in reverse order)
[2025-12-14 10:07:26] 2025-12-14 15:06:50,932 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 10:07:26] 2025-12-14 15:06:50,932 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 10:07:26] 2025-12-14 15:06:50,953 | INFO     | did not find any defunct processes belonging to 1407056
[2025-12-14 10:07:26] 2025-12-14 15:06:50,971 | INFO     | did not find any defunct processes belonging to 1407056
[2025-12-14 10:07:26] 2025-12-14 15:06:50,971 | INFO     | ready for new job
[2025-12-14 10:07:26] 2025-12-14 15:06:50,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 10:07:26] 2025-12-14 15:06:50,986 | INFO     | ***************************************
[2025-12-14 10:07:26] 2025-12-14 15:06:50,986 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 10:07:26] 2025-12-14 15:06:50,987 | INFO     | ***************************************
[2025-12-14 10:07:26] 2025-12-14 15:06:50,987 | INFO     | 
[2025-12-14 10:07:26] 2025-12-14 15:06:50,995 | INFO     | architecture information:
[2025-12-14 10:07:26] 2025-12-14 15:06:50,995 | INFO     | executing command: cat /etc/os-release
[2025-12-14 10:07:26] 2025-12-14 15:06:51,015 | INFO     | cat /etc/os-release:
[2025-12-14 10:07:26] NAME="CentOS Linux"
[2025-12-14 10:07:26] VERSION="7 (Core)"
[2025-12-14 10:07:26] ID="centos"
[2025-12-14 10:07:26] ID_LIKE="rhel fedora"
[2025-12-14 10:07:26] VERSION_ID="7"
[2025-12-14 10:07:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 10:07:26] ANSI_COLOR="0;31"
[2025-12-14 10:07:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 10:07:26] HOME_URL="https://www.centos.org/"
[2025-12-14 10:07:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 10:07:26] 
[2025-12-14 10:07:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 10:07:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 10:07:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 10:07:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 10:07:26] 
[2025-12-14 10:07:26] 2025-12-14 15:06:51,015 | INFO     | ***************************************
[2025-12-14 10:07:26] 2025-12-14 15:06:51,520 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-14 10:07:26] 2025-12-14 15:06:51,633 | INFO     | sufficient remaining disk space (75131518976 B)
[2025-12-14 10:07:26] 2025-12-14 15:06:51,634 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 10:07:26] 2025-12-14 15:06:51,634 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 10:07:26] 2025-12-14 15:06:51,634 | INFO     | update_server=False
[2025-12-14 10:07:26] 2025-12-14 15:06:51,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 10:07:26] 2025-12-14 15:06:51,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 10:07:26] 2025-12-14 15:06:51,635 | INFO     | aborting loop
[2025-12-14 10:07:26] 2025-12-14 15:06:52,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 10:07:26] 2025-12-14 15:06:52,314 | INFO     | all payload control threads have been joined
[2025-12-14 10:07:26] 2025-12-14 15:06:52,512 | INFO     | all job control threads have been joined
[2025-12-14 10:07:26] 2025-12-14 15:06:52,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 10:07:26] 2025-12-14 15:06:52,626 | INFO     | all data control threads have been joined
[2025-12-14 10:07:26] 2025-12-14 15:06:52,667 | INFO     | [job] job monitor thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:52,676 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:52,680 | INFO     | [job] retrieve thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:52,746 | INFO     | [payload] failed_post thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,151 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,231 | INFO     | [job] validate thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,258 | INFO     | [data] copytool_in thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,268 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,320 | INFO     | [payload] control thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,412 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 10:07:26] 2025-12-14 15:06:53,520 | INFO     | [job] control thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,674 | INFO     | [data] control thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:53,718 | INFO     | [payload] validate_post thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:54,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:54,419 | INFO     | [job] queue monitor thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:54,561 | INFO     | [data] copytool_out thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:06:56,154 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 10:07:26] 2025-12-14 15:07:19,476 | INFO     | [monitor] cgroup control has ended
[2025-12-14 10:07:26] 2025-12-14 15:07:20,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850730886976)>', '<ExcThread(monitor, started 139850074273536)>']
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | INFO     | PID=1373390 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | INFO     | .. there are 23 such processes running
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 10:07:26] 2025-12-14 15:07:24,332 | INFO     | [monitor] control thread has ended
[2025-12-14 10:07:26] 2025-12-14 15:07:25,589 | INFO     | all workflow threads have been joined
[2025-12-14 10:07:26] 2025-12-14 15:07:25,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 10:07:26] 2025-12-14 15:07:25,590 | INFO     | traces error code: 0
[2025-12-14 10:07:26] 2025-12-14 15:07:25,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 10:07:26] 2025-12-14 15:07:25,930 [wrapper] ==== pilot stdout END ====
[2025-12-14 10:07:26] 2025-12-14 15:07:25,938 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 10:07:26] 2025-12-14 15:07:25,943 [wrapper] pilotpid: 1373390
[2025-12-14 10:07:26] 2025-12-14 15:07:25,947 [wrapper] Pilot exit status: 0
[2025-12-14 10:07:26] 2025-12-14 15:07:26,034 [wrapper] pandaids: 6929308248 6929308248
[2025-12-14 10:07:26] 2025-12-14 15:07:26,185 [wrapper] cleanup supervisor_pilot 2862974 1373391
[2025-12-14 10:07:26] 2025-12-14 15:07:26,193 [wrapper] Test setup, not cleaning
[2025-12-14 10:07:26] 2025-12-14 15:07:26,198 [wrapper] apfmon messages muted
[2025-12-14 10:07:26] 2025-12-14 15:07:26,202 [wrapper] ==== wrapper stdout END ====
[2025-12-14 10:07:26] 2025-12-14 15:07:26,205 [wrapper] ==== wrapper stderr END ====
[2025-12-14 10:07:26]  *** Error codes and diagnostics ***
[2025-12-14 10:07:26]     "exeErrorCode": 0,
[2025-12-14 10:07:26]     "exeErrorDiag": "",
[2025-12-14 10:07:26]     "pilotErrorCode": 0,
[2025-12-14 10:07:26]     "pilotErrorDiag": "",
[2025-12-14 10:07:26]  *** Listing of results directory ***
[2025-12-14 10:07:26] total 620116
[2025-12-14 10:07:26] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 06:35 pilot3.tar.gz
[2025-12-14 10:07:26] -rwx------. 1 boincer umatlas     36322 Dec 13 06:37 runpilot2-wrapper.sh
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 06:41 queuedata.json
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas       100 Dec 14 03:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 10:07:26] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 03:04 run_atlas
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas       105 Dec 14 03:04 job.xml
[2025-12-14 10:07:26] -rw-r--r--. 3 boincer umatlas 213605974 Dec 14 03:04 EVNT.47898833._000078.pool.root.1
[2025-12-14 10:07:26] -rw-r--r--. 3 boincer umatlas 213605974 Dec 14 03:04 ATLAS.root_0
[2025-12-14 10:07:26] -rw-r--r--. 2 boincer umatlas    592401 Dec 14 03:04 input.tar.gz
[2025-12-14 10:07:26] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 03:04 start_atlas.sh
[2025-12-14 10:07:26] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 03:04 shared
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas         0 Dec 14 03:04 boinc_lockfile
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas      2548 Dec 14 04:48 pandaJob.out
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas        57 Dec 14 04:48 setup.sh.local
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas    991736 Dec 14 04:48 agis_schedconf.cvmfs.json
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas      6946 Dec 14 10:04 init_data.xml
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas 198008410 Dec 14 10:05 HITS.47898836._001446.pool.root.1
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas       531 Dec 14 10:05 boinc_task_state.xml
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas      1047 Dec 14 10:06 memory_monitor_summary.json
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas   1516240 Dec 14 10:06 agis_ddmendpoints.agis.ALL.json
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas    528001 Dec 14 10:06 log.47898836._001446.job.log.tgz.1
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas        96 Dec 14 10:06 pilot_heartbeat.json
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas      7793 Dec 14 10:06 heartbeat.json
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 10:07 boinc_mmap_file
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas        28 Dec 14 10:07 wrapper_checkpoint.txt
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas      4824 Dec 14 10:07 pilotlog.txt
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas   2398983 Dec 14 10:07 log.47898836._001446.job.log.1
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas       357 Dec 14 10:07 output.list
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas       620 Dec 14 10:07 runtime_log
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas   2949120 Dec 14 10:07 result.tar.gz
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas      9423 Dec 14 10:07 runtime_log.err
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas       785 Dec 14 10:07 53VNDmr7co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwEPKDm8j3sAn.diag
[2025-12-14 10:07:26] -rw-r--r--. 1 boincer umatlas     23384 Dec 14 10:07 stderr.txt
[2025-12-14 10:07:26] HITS file was successfully produced:
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas 198008410 Dec 14 10:05 shared/HITS.pool.root.1
[2025-12-14 10:07:26]  *** Contents of shared directory: ***
[2025-12-14 10:07:26] total 405452
[2025-12-14 10:07:26] -rw-r--r--. 3 boincer umatlas 213605974 Dec 14 03:04 ATLAS.root_0
[2025-12-14 10:07:26] -rw-r--r--. 2 boincer umatlas    592401 Dec 14 03:04 input.tar.gz
[2025-12-14 10:07:26] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 03:04 start_atlas.sh
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas 198008410 Dec 14 10:05 HITS.pool.root.1
[2025-12-14 10:07:26] -rw-------. 1 boincer umatlas   2949120 Dec 14 10:07 result.tar.gz
10:07:27 (1355108): run_atlas exited; CPU time 48504.261820
10:07:27 (1355108): called boinc_finish(0)

</stderr_txt>
]]>

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