Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:54:49 (4084909): wrapper (7.7.26015): starting
01:54:49 (4084909): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 01:54:49] Arguments: --nthreads 12
[2025-12-14 01:54:49] Threads: 12
[2025-12-14 01:54:49] Checking for CVMFS
[2025-12-14 01:54:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 01:54:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 01:54:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 01:54:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 01:54:51] 2.13.3.0 9890 55502 334396 153986 2 323 27196238 32935936 16187 16776704 0 278660874 99.721 193026151 33366 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 01:54:51] CVMFS is ok
[2025-12-14 01:54:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 01:54:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 01:54:51] Further information can be found at the LHC@home message board.
[2025-12-14 01:54:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 01:54:51] Checking for apptainer binary...
[2025-12-14 01:54:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 01:54:51] Running /usr/bin/apptainer --version
[2025-12-14 01:54:51] apptainer version 1.4.5-2.el9
[2025-12-14 01:54:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 01:54:51] c-8-36.aglt2.org
[2025-12-14 01:54:51] apptainer works
[2025-12-14 01:54:51] Set ATHENA_PROC_NUMBER=12
[2025-12-14 01:54:51] Set ATHENA_CORE_NUMBER=12
[2025-12-14 01:54:51] Starting ATLAS job with PandaID=6929503377
[2025-12-14 01:54:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 07:41:00]  *** The last 200 lines of the pilot log: ***
[2025-12-14 07:41:00] 2025-12-14 12:40:20,537 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929503377/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 07:41:00] 2025-12-14 12:40:20,593 | INFO     | extracted standard info from prmon json
[2025-12-14 07:41:00] 2025-12-14 12:40:20,594 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 07:41:00] 2025-12-14 12:40:20,599 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 07:41:00] 2025-12-14 12:40:20,600 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 07:41:00] 2025-12-14 12:40:20,600 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 07:41:00] 2025-12-14 12:40:20,614 | INFO     | monitor loop #1164: job 0:6929503377 is in state 'finished'
[2025-12-14 07:41:00] 2025-12-14 12:40:20,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:41:00] 2025-12-14 12:40:20,678 | INFO     | fitting pss+swap vs Time
[2025-12-14 07:41:00] 2025-12-14 12:40:20,679 | INFO     | sum of square deviations: 12081838728.023645
[2025-12-14 07:41:00] 2025-12-14 12:40:20,720 | INFO     | sum of deviations: 7385301870.30975
[2025-12-14 07:41:00] 2025-12-14 12:40:20,721 | INFO     | mean x: 1765705656.179941
[2025-12-14 07:41:00] 2025-12-14 12:40:20,721 | INFO     | mean y: 2665864.4867256638
[2025-12-14 07:41:00] 2025-12-14 12:40:20,721 | INFO     | intersect: -1076662338.6580086
[2025-12-14 07:41:00] 2025-12-14 12:40:20,722 | INFO     | chi2: 3.0177979695362804
[2025-12-14 07:41:00] 2025-12-14 12:40:20,776 | INFO     | sum of square deviations: 11555239845.23652
[2025-12-14 07:41:00] 2025-12-14 12:40:20,805 | INFO     | sum of deviations: 55287533534.407295
[2025-12-14 07:41:00] 2025-12-14 12:40:20,806 | INFO     | mean x: 1765705503.6916168
[2025-12-14 07:41:00] 2025-12-14 12:40:20,806 | INFO     | mean y: 2679612.431137725
[2025-12-14 07:41:00] 2025-12-14 12:40:20,806 | INFO     | intersect: -8445565820.352399
[2025-12-14 07:41:00] 2025-12-14 12:40:20,807 | INFO     | chi2: 1.449301856013092
[2025-12-14 07:41:00] 2025-12-14 12:40:20,807 | INFO     | current chi2=1.449301856013092 (change=51.97485482317447 %)
[2025-12-14 07:41:00] 2025-12-14 12:40:20,862 | INFO     | sum of square deviations: 11044135756.157982
[2025-12-14 07:41:00] 2025-12-14 12:40:20,893 | INFO     | sum of deviations: 54147084715.61401
[2025-12-14 07:41:00] 2025-12-14 12:40:20,894 | INFO     | mean x: 1765705351.1975684
[2025-12-14 07:41:00] 2025-12-14 12:40:20,894 | INFO     | mean y: 2679272.2674772036
[2025-12-14 07:41:00] 2025-12-14 12:40:20,894 | INFO     | intersect: -8654204285.216755
[2025-12-14 07:41:00] 2025-12-14 12:40:20,895 | INFO     | chi2: 1.4496473490901407
[2025-12-14 07:41:00] 2025-12-14 12:40:20,895 | INFO     | current chi2=1.4496473490901407 (change=-0.023838586531532417 %)
[2025-12-14 07:41:00] 2025-12-14 12:40:20,895 | INFO     | right removable region: 328
[2025-12-14 07:41:00] 2025-12-14 12:40:20,895 | INFO     | sum of square deviations: 11555037078.458086
[2025-12-14 07:41:00] 2025-12-14 12:40:21,003 | INFO     | sum of deviations: -46320775047.416176
[2025-12-14 07:41:00] 2025-12-14 12:40:21,003 | INFO     | mean x: 1765705808.697605
[2025-12-14 07:41:00] 2025-12-14 12:40:21,003 | INFO     | mean y: 2681305.1047904193
[2025-12-14 07:41:00] 2025-12-14 12:40:21,003 | INFO     | intersect: 7080881142.046534
[2025-12-14 07:41:00] 2025-12-14 12:40:21,004 | INFO     | chi2: 1.6426149162737458
[2025-12-14 07:41:00] 2025-12-14 12:40:21,004 | INFO     | current chi2=1.6426149162737458 (change=45.56908935404471 %)
[2025-12-14 07:41:00] 2025-12-14 12:40:21,005 | INFO     | sum of square deviations: 11043871620.759834
[2025-12-14 07:41:00] 2025-12-14 12:40:21,178 | INFO     | sum of deviations: -37976196594.99392
[2025-12-14 07:41:00] 2025-12-14 12:40:21,178 | INFO     | mean x: 1765705961.200608
[2025-12-14 07:41:00] 2025-12-14 12:40:21,178 | INFO     | mean y: 2678790.9696048633
[2025-12-14 07:41:00] 2025-12-14 12:40:21,179 | INFO     | intersect: 6074353563.561132
[2025-12-14 07:41:00] 2025-12-14 12:40:21,235 | INFO     | chi2: 1.596851674556965
[2025-12-14 07:41:00] 2025-12-14 12:40:21,236 | INFO     | current chi2=1.596851674556965 (change=2.7859994003094912 %)
[2025-12-14 07:41:00] 2025-12-14 12:40:21,236 | INFO     | left removable region: 20
[2025-12-14 07:41:00] 2025-12-14 12:40:21,236 | INFO     | sum of square deviations: 9061409541.75
[2025-12-14 07:41:00] 2025-12-14 12:40:21,310 | INFO     | sum of deviations: 5911752815.499995
[2025-12-14 07:41:00] 2025-12-14 12:40:21,310 | INFO     | mean x: 1765705930.75
[2025-12-14 07:41:00] 2025-12-14 12:40:21,310 | INFO     | mean y: 2693906.9415584416
[2025-12-14 07:41:00] 2025-12-14 12:40:21,311 | INFO     | intersect: -1149270029.7243497
[2025-12-14 07:41:00] 2025-12-14 12:40:21,311 | INFO     | chi2: 0.0008711987788071238
[2025-12-14 07:41:00] 2025-12-14 12:40:21,311 | INFO     | current memory leak: 0.65 B/s (using 308 data points, chi2=0.00)
[2025-12-14 07:41:00] 2025-12-14 12:40:21,312 | INFO     | could have reported an average CPU frequency of 2600 MHz (15 samples)
[2025-12-14 07:41:00] 2025-12-14 12:40:21,312 | INFO     | ..............................
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . Timing measurements:
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . get job = 0 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . initial setup = 3 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . payload setup = 8 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . stage-in = 0 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . payload execution = 20630 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . stage-out = 6 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | . log creation = 1 s
[2025-12-14 07:41:00] 2025-12-14 12:40:21,313 | INFO     | ..............................
[2025-12-14 07:41:00] 2025-12-14 12:40:22,801 | INFO     | 
[2025-12-14 07:41:00] 2025-12-14 12:40:22,801 | INFO     | job summary report
[2025-12-14 07:41:00] 2025-12-14 12:40:22,801 | INFO     | --------------------------------------------------
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | PanDA job id: 6929503377
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | task id: 47898878
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | errors: (none)
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | pilot state: finished 
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | transexitcode: 0
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | exeerrorcode: 0
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | exeerrordiag: 
[2025-12-14 07:41:00] 2025-12-14 12:40:22,802 | INFO     | exitcode: 0
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | exitmsg: OK
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | cpuconsumptiontime: 50059 s
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | nevents: 400
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | neventsw: 0
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | pid: 4095784
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | pgrp: 4095784
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | corecount: 12
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | event service: False
[2025-12-14 07:41:00] 2025-12-14 12:40:22,803 | INFO     | sizes: {0: 2283110, 1: 2283966, 8: 2284228, 12: 2284256, 20644: 2317604, 20645: 2317603, 20652: 2326785, 20653: 2326841, 20694: 2327035}
[2025-12-14 07:41:00] 2025-12-14 12:40:22,804 | INFO     | --------------------------------------------------
[2025-12-14 07:41:00] 2025-12-14 12:40:22,804 | INFO     | 
[2025-12-14 07:41:00] 2025-12-14 12:40:22,804 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 07:41:00] 2025-12-14 12:40:23,169 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 07:41:00] 2025-12-14 12:40:23,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 07:41:00] 2025-12-14 12:40:23,172 | INFO     | job 6929503377 has completed (purged errors)
[2025-12-14 07:41:00] 2025-12-14 12:40:23,172 | INFO     | overall cleanup function is called
[2025-12-14 07:41:00] 2025-12-14 12:40:24,230 | INFO     | --- collectZombieJob: --- 10, [4095784]
[2025-12-14 07:41:00] 2025-12-14 12:40:24,230 | INFO     | zombie collector waiting for pid 4095784
[2025-12-14 07:41:00] 2025-12-14 12:40:24,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 07:41:00] 2025-12-14 12:40:24,230 | INFO     | collected zombie processes
[2025-12-14 07:41:00] 2025-12-14 12:40:24,230 | INFO     | will attempt to kill all subprocesses of pid=4095784
[2025-12-14 07:41:00] 2025-12-14 12:40:25,562 | INFO     | PID=4089292 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 07:41:00] 2025-12-14 12:40:25,562 | INFO     | .. there are 15 such processes running
[2025-12-14 07:41:00] 2025-12-14 12:40:27,855 | INFO     | process IDs to be killed: [4095784] (in reverse order)
[2025-12-14 07:41:00] 2025-12-14 12:40:28,520 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 07:41:00] 2025-12-14 12:40:28,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 07:41:00] 2025-12-14 12:40:28,647 | INFO     | did not find any defunct processes belonging to 4095784
[2025-12-14 07:41:00] 2025-12-14 12:40:28,759 | INFO     | did not find any defunct processes belonging to 4095784
[2025-12-14 07:41:00] 2025-12-14 12:40:28,759 | INFO     | ready for new job
[2025-12-14 07:41:00] 2025-12-14 12:40:28,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 07:41:00] 2025-12-14 12:40:28,802 | INFO     | ***************************************
[2025-12-14 07:41:00] 2025-12-14 12:40:28,802 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 07:41:00] 2025-12-14 12:40:28,802 | INFO     | ***************************************
[2025-12-14 07:41:00] 2025-12-14 12:40:28,802 | INFO     | 
[2025-12-14 07:41:00] 2025-12-14 12:40:28,818 | INFO     | architecture information:
[2025-12-14 07:41:00] 2025-12-14 12:40:28,846 | INFO     | executing command: cat /etc/os-release
[2025-12-14 07:41:00] 2025-12-14 12:40:29,131 | INFO     | cat /etc/os-release:
[2025-12-14 07:41:00] NAME="CentOS Linux"
[2025-12-14 07:41:00] VERSION="7 (Core)"
[2025-12-14 07:41:00] ID="centos"
[2025-12-14 07:41:00] ID_LIKE="rhel fedora"
[2025-12-14 07:41:00] VERSION_ID="7"
[2025-12-14 07:41:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 07:41:00] ANSI_COLOR="0;31"
[2025-12-14 07:41:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 07:41:00] HOME_URL="https://www.centos.org/"
[2025-12-14 07:41:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 07:41:00] 
[2025-12-14 07:41:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 07:41:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 07:41:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 07:41:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 07:41:00] 
[2025-12-14 07:41:00] 2025-12-14 12:40:29,132 | INFO     | ***************************************
[2025-12-14 07:41:00] 2025-12-14 12:40:29,635 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 07:41:00] 2025-12-14 12:40:29,909 | INFO     | sufficient remaining disk space (75863425024 B)
[2025-12-14 07:41:00] 2025-12-14 12:40:29,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 07:41:00] 2025-12-14 12:40:29,909 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 07:41:00] 2025-12-14 12:40:29,909 | INFO     | update_server=False
[2025-12-14 07:41:00] 2025-12-14 12:40:29,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 07:41:00] 2025-12-14 12:40:29,911 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:41:00] 2025-12-14 12:40:29,911 | INFO     | aborting loop
[2025-12-14 07:41:00] 2025-12-14 12:40:30,570 | INFO     | all data control threads have been joined
[2025-12-14 07:41:00] 2025-12-14 12:40:30,691 | INFO     | all payload control threads have been joined
[2025-12-14 07:41:00] 2025-12-14 12:40:30,810 | INFO     | all job control threads have been joined
[2025-12-14 07:41:00] 2025-12-14 12:40:30,915 | INFO     | [job] retrieve thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:30,917 | INFO     | [job] job monitor thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:30,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 07:41:00] 2025-12-14 12:40:31,032 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,241 | INFO     | [job] validate thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,257 | INFO     | [data] copytool_in thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,311 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,576 | INFO     | [data] control thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,697 | INFO     | [payload] control thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,790 | INFO     | [payload] validate_post thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:31,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:41:00] 2025-12-14 12:40:31,816 | INFO     | [job] control thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:32,212 | INFO     | [payload] failed_post thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:32,228 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:32,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 07:41:00] 2025-12-14 12:40:32,813 | INFO     | [job] queue monitor thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:32,972 | INFO     | [data] copytool_out thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:36,471 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 07:41:00] 2025-12-14 12:40:46,611 | INFO     | [monitor] cgroup control has ended
[2025-12-14 07:41:00] 2025-12-14 12:40:47,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140711909902144)>', '<ExcThread(monitor, started 140711408150272)>']
[2025-12-14 07:41:00] 2025-12-14 12:40:52,918 | INFO     | all workflow threads have been joined
[2025-12-14 07:41:00] 2025-12-14 12:40:52,918 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 07:41:00] 2025-12-14 12:40:52,919 | INFO     | traces error code: 0
[2025-12-14 07:41:00] 2025-12-14 12:40:52,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 07:41:00] 2025-12-14 12:40:58,689 | INFO     | PID=4089292 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 07:41:00] 2025-12-14 12:40:58,689 | INFO     | .. there are 15 such processes running
[2025-12-14 07:41:00] 2025-12-14 12:40:58,690 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 07:41:00] 2025-12-14 12:40:58,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 07:41:00] 2025-12-14 12:40:58,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 07:41:00] 2025-12-14 12:40:58,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 07:41:00] 2025-12-14 12:40:58,690 | INFO     | [monitor] control thread has ended
[2025-12-14 07:41:00] 2025-12-14 12:40:58,872 [wrapper] ==== pilot stdout END ====
[2025-12-14 07:41:00] 2025-12-14 12:40:58,890 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 07:41:00] 2025-12-14 12:40:58,896 [wrapper] pilotpid: 4089292
[2025-12-14 07:41:00] 2025-12-14 12:40:58,968 [wrapper] Pilot exit status: 0
[2025-12-14 07:41:00] 2025-12-14 12:40:59,135 [wrapper] pandaids: 6929503377
[2025-12-14 07:41:00] 2025-12-14 12:40:59,686 [wrapper] cleanup supervisor_pilot  947027 4089293
[2025-12-14 07:41:00] 2025-12-14 12:40:59,691 [wrapper] Test setup, not cleaning
[2025-12-14 07:41:00] 2025-12-14 12:40:59,695 [wrapper] apfmon messages muted
[2025-12-14 07:41:00] 2025-12-14 12:40:59,698 [wrapper] ==== wrapper stdout END ====
[2025-12-14 07:41:00] 2025-12-14 12:40:59,701 [wrapper] ==== wrapper stderr END ====
[2025-12-14 07:41:00]  *** Error codes and diagnostics ***
[2025-12-14 07:41:00]     "exeErrorCode": 0,
[2025-12-14 07:41:00]     "exeErrorDiag": "",
[2025-12-14 07:41:00]     "pilotErrorCode": 0,
[2025-12-14 07:41:00]     "pilotErrorDiag": "",
[2025-12-14 07:41:00]  *** Listing of results directory ***
[2025-12-14 07:41:01] total 386736
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 12:18 pilot3.tar.gz
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 12:19 queuedata.json
[2025-12-14 07:41:01] -rwx------. 1 boincer umatlas     36322 Dec 13 12:20 runpilot2-wrapper.sh
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas       100 Dec 14 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 07:41:01] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 01:54 run_atlas
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas       105 Dec 14 01:54 job.xml
[2025-12-14 07:41:01] -rw-r--r--. 2 boincer umatlas 200408544 Dec 14 01:54 EVNT.47898875._000030.pool.root.1
[2025-12-14 07:41:01] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 01:54 start_atlas.sh
[2025-12-14 07:41:01] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 01:54 shared
[2025-12-14 07:41:01] -rw-r--r--. 2 boincer umatlas    592387 Dec 14 01:54 input.tar.gz
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas         0 Dec 14 01:54 boinc_lockfile
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas      2497 Dec 14 01:54 pandaJob.out
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas        57 Dec 14 01:54 setup.sh.local
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas    991736 Dec 14 01:55 agis_schedconf.cvmfs.json
[2025-12-14 07:41:01] drwx------. 5 boincer umatlas      4096 Dec 14 01:55 pilot3
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas      6659 Dec 14 07:36 init_data.xml
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas 185564666 Dec 14 07:38 HITS.47898878._000730.pool.root.1
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas       531 Dec 14 07:38 boinc_task_state.xml
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas      1047 Dec 14 07:39 memory_monitor_summary.json
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas   1516240 Dec 14 07:39 agis_ddmendpoints.agis.ALL.json
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas    577831 Dec 14 07:39 log.47898878._000730.job.log.tgz.1
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas        95 Dec 14 07:40 pilot_heartbeat.json
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas      7816 Dec 14 07:40 heartbeat.json
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas        28 Dec 14 07:40 wrapper_checkpoint.txt
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas       823 Dec 14 07:40 pilotlog.txt
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas   2482614 Dec 14 07:40 log.47898878._000730.job.log.1
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas       357 Dec 14 07:41 output.list
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas       620 Dec 14 07:41 runtime_log
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas   3082240 Dec 14 07:41 result.tar.gz
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas      9335 Dec 14 07:41 runtime_log.err
[2025-12-14 07:41:01] -rw-------. 1 boincer umatlas       655 Dec 14 07:41 HxVKDm1Sio8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDrPKDmCot6Cn.diag
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 07:41 boinc_mmap_file
[2025-12-14 07:41:01] -rw-r--r--. 1 boincer umatlas     21303 Dec 14 07:41 stderr.txt
[2025-12-14 07:41:21] HITS file was successfully produced:
[2025-12-14 07:41:21] -rw-------. 1 boincer umatlas 185564666 Dec 14 07:38 shared/HITS.pool.root.1
[2025-12-14 07:41:21]  *** Contents of shared directory: ***
[2025-12-14 07:41:22] total 380544
[2025-12-14 07:41:22] -rw-r--r--. 2 boincer umatlas 200408544 Dec 14 01:54 ATLAS.root_0
[2025-12-14 07:41:22] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 01:54 start_atlas.sh
[2025-12-14 07:41:22] -rw-r--r--. 2 boincer umatlas    592387 Dec 14 01:54 input.tar.gz
[2025-12-14 07:41:22] -rw-------. 1 boincer umatlas 185564666 Dec 14 07:38 HITS.pool.root.1
[2025-12-14 07:41:22] -rw-------. 1 boincer umatlas   3082240 Dec 14 07:41 result.tar.gz
07:41:24 (4084909): run_atlas exited; CPU time 50663.544567
07:41:24 (4084909): called boinc_finish(0)

</stderr_txt>
]]>

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