Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:18:28 (839819): wrapper (7.7.26015): starting
10:18:28 (839819): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 10:18:28] Arguments: --nthreads 4
[2025-12-14 10:18:28] Threads: 4
[2025-12-14 10:18:28] Checking for CVMFS
[2025-12-14 10:18:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 10:18:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 10:18:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 10:18:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 10:18:28] 2.9.2.0 362371 1588 85788 153990 2 56 19899359 36864001 0 130560 0 1244682 99.991 57285 13948 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 10:18:28] CVMFS is ok
[2025-12-14 10:18:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 10:18:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 10:18:28] Further information can be found at the LHC@home message board.
[2025-12-14 10:18:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 10:18:28] Checking for apptainer binary...
[2025-12-14 10:18:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 10:18:28] Running /usr/bin/apptainer --version
[2025-12-14 10:18:28] apptainer version 1.4.1-1.1
[2025-12-14 10:18:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 10:18:28] thA319a
[2025-12-14 10:18:28] apptainer works
[2025-12-14 10:18:28] Set ATHENA_PROC_NUMBER=4
[2025-12-14 10:18:28] Set ATHENA_CORE_NUMBER=4
[2025-12-14 10:18:28] Starting ATLAS job with PandaID=6929302428
[2025-12-14 10:18:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 12:02:49]  *** The last 200 lines of the pilot log: ***
[2025-12-14 12:02:49] 2025-12-14 11:02:04,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | job 6929302428 has completed (purged errors)
[2025-12-14 12:02:49] 2025-12-14 11:02:04,346 | INFO     | overall cleanup function is called
[2025-12-14 12:02:49] 2025-12-14 11:02:05,353 | INFO     | --- collectZombieJob: --- 10, [850195]
[2025-12-14 12:02:49] 2025-12-14 11:02:05,353 | INFO     | zombie collector waiting for pid 850195
[2025-12-14 12:02:49] 2025-12-14 11:02:05,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 12:02:49] 2025-12-14 11:02:05,353 | INFO     | collected zombie processes
[2025-12-14 12:02:49] 2025-12-14 11:02:05,353 | INFO     | will attempt to kill all subprocesses of pid=850195
[2025-12-14 12:02:49] 2025-12-14 11:02:05,399 | INFO     | process IDs to be killed: [850195] (in reverse order)
[2025-12-14 12:02:49] 2025-12-14 11:02:05,432 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 12:02:49] 2025-12-14 11:02:05,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 12:02:49] 2025-12-14 11:02:05,434 | INFO     | did not find any defunct processes belonging to 850195
[2025-12-14 12:02:49] 2025-12-14 11:02:05,435 | INFO     | did not find any defunct processes belonging to 850195
[2025-12-14 12:02:49] 2025-12-14 11:02:05,435 | INFO     | ready for new job
[2025-12-14 12:02:49] 2025-12-14 11:02:05,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 12:02:49] 2025-12-14 11:02:05,436 | INFO     | ***************************************
[2025-12-14 12:02:49] 2025-12-14 11:02:05,436 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 12:02:49] 2025-12-14 11:02:05,436 | INFO     | ***************************************
[2025-12-14 12:02:49] 2025-12-14 11:02:05,436 | INFO     | 
[2025-12-14 12:02:49] 2025-12-14 11:02:05,436 | INFO     | architecture information:
[2025-12-14 12:02:49] 2025-12-14 11:02:05,437 | INFO     | executing command: cat /etc/os-release
[2025-12-14 12:02:49] 2025-12-14 11:02:05,450 | INFO     | cat /etc/os-release:
[2025-12-14 12:02:49] NAME="CentOS Linux"
[2025-12-14 12:02:49] VERSION="7 (Core)"
[2025-12-14 12:02:49] ID="centos"
[2025-12-14 12:02:49] ID_LIKE="rhel fedora"
[2025-12-14 12:02:49] VERSION_ID="7"
[2025-12-14 12:02:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 12:02:49] ANSI_COLOR="0;31"
[2025-12-14 12:02:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 12:02:49] HOME_URL="https://www.centos.org/"
[2025-12-14 12:02:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 12:02:49] 
[2025-12-14 12:02:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 12:02:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 12:02:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 12:02:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 12:02:49] 
[2025-12-14 12:02:49] 2025-12-14 11:02:05,451 | INFO     | ***************************************
[2025-12-14 12:02:49] 2025-12-14 11:02:05,954 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 12:02:49] 2025-12-14 11:02:05,972 | INFO     | sufficient remaining disk space (340816560128 B)
[2025-12-14 12:02:49] 2025-12-14 11:02:05,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 12:02:49] 2025-12-14 11:02:05,972 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 12:02:49] 2025-12-14 11:02:05,972 | INFO     | update_server=False
[2025-12-14 12:02:49] 2025-12-14 11:02:05,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | INFO     | aborting loop
[2025-12-14 12:02:49] 2025-12-14 11:02:05,973 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 12:02:49] 2025-12-14 11:02:05,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 12:02:49] 2025-12-14 11:02:05,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 12:02:49] 2025-12-14 11:02:06,177 | INFO     | all payload control threads have been joined
[2025-12-14 12:02:49] 2025-12-14 11:02:06,777 | INFO     | all data control threads have been joined
[2025-12-14 12:02:49] 2025-12-14 11:02:06,978 | INFO     | [job] retrieve thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:06,979 | INFO     | [job] queue monitor thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:06,979 | INFO     | [job] job monitor thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,045 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,045 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,146 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,183 | INFO     | [payload] control thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,575 | INFO     | all job control threads have been joined
[2025-12-14 12:02:49] 2025-12-14 11:02:07,683 | INFO     | [payload] validate_post thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,710 | INFO     | [data] copytool_in thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,782 | INFO     | [data] control thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:07,980 | INFO     | [data] copytool_out thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:08,152 | INFO     | [payload] failed_post thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:08,468 | INFO     | [job] validate thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:08,580 | INFO     | [job] control thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:09,980 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:16,132 | INFO     | job.realtimelogging is not enabled
[2025-12-14 12:02:49] 2025-12-14 11:02:17,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 12:02:49] 2025-12-14 11:02:44,000 | INFO     | [monitor] cgroup control has ended
[2025-12-14 12:02:49] 2025-12-14 11:02:44,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223196948288)>', '<ExcThread(monitor, started 140222478145280)>']
[2025-12-14 12:02:49] 2025-12-14 11:02:45,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 12:02:49] 2025-12-14 11:02:45,178 | INFO     | [monitor] control thread has ended
[2025-12-14 12:02:49] 2025-12-14 11:02:49,519 | INFO     | all workflow threads have been joined
[2025-12-14 12:02:49] 2025-12-14 11:02:49,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 12:02:49] 2025-12-14 11:02:49,521 | INFO     | traces error code: 0
[2025-12-14 12:02:49] 2025-12-14 11:02:49,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 12:02:49] 2025-12-14 11:02:49,601 [wrapper] ==== pilot stdout END ====
[2025-12-14 12:02:49] 2025-12-14 11:02:49,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 12:02:49] 2025-12-14 11:02:49,609 [wrapper] pilotpid: 843611
[2025-12-14 12:02:49] 2025-12-14 11:02:49,613 [wrapper] Pilot exit status: 0
[2025-12-14 12:02:49] 2025-12-14 11:02:49,625 [wrapper] pandaids: 6929302428
[2025-12-14 12:02:49] 2025-12-14 11:02:49,648 [wrapper] cleanup supervisor_pilot  862394 843612
[2025-12-14 12:02:49] 2025-12-14 11:02:49,652 [wrapper] Test setup, not cleaning
[2025-12-14 12:02:49] 2025-12-14 11:02:49,656 [wrapper] apfmon messages muted
[2025-12-14 12:02:49] 2025-12-14 11:02:49,660 [wrapper] ==== wrapper stdout END ====
[2025-12-14 12:02:49] 2025-12-14 11:02:49,664 [wrapper] ==== wrapper stderr END ====
[2025-12-14 12:02:49]  *** Error codes and diagnostics ***
[2025-12-14 12:02:49]     "exeErrorCode": 0,
[2025-12-14 12:02:49]     "exeErrorDiag": "",
[2025-12-14 12:02:49]     "pilotErrorCode": 0,
[2025-12-14 12:02:49]     "pilotErrorDiag": "",
[2025-12-14 12:02:49]  *** Listing of results directory ***
[2025-12-14 12:02:49] total 448980
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-14 12:02:49] -rwx------ 1 boinc boinc     36322 Dec 13 12:37 runpilot2-wrapper.sh
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:38 queuedata.json
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc       100 Dec 14 10:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 12:02:49] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 10:18 run_atlas
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc       105 Dec 14 10:18 job.xml
[2025-12-14 12:02:49] -rw-r--r-- 2 boinc boinc 224736344 Dec 14 10:18 EVNT.47898761._000252.pool.root.1
[2025-12-14 12:02:49] -rw-r--r-- 2 boinc boinc    592400 Dec 14 10:18 input.tar.gz
[2025-12-14 12:02:49] -rw-r--r-- 2 boinc boinc     15847 Dec 14 10:18 start_atlas.sh
[2025-12-14 12:02:49] drwxrwx--x 2 boinc boinc      4096 Dec 14 10:18 shared
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc         0 Dec 14 10:18 boinc_setup_complete
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc      6367 Dec 14 10:18 init_data.xml
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc         0 Dec 14 10:18 boinc_lockfile
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc      2505 Dec 14 10:18 pandaJob.out
[2025-12-14 12:02:49] -rw------- 1 boinc boinc    991736 Dec 14 10:18 agis_schedconf.cvmfs.json
[2025-12-14 12:02:49] -rw------- 1 boinc boinc   1516240 Dec 14 10:18 agis_ddmendpoints.agis.ALL.json
[2025-12-14 12:02:49] drwx------ 5 boinc boinc      4096 Dec 14 10:18 pilot3
[2025-12-14 12:02:49] -rw------- 1 boinc boinc        95 Dec 14 12:01 pilot_heartbeat.json
[2025-12-14 12:02:49] -rw------- 1 boinc boinc 228707336 Dec 14 12:01 HITS.47898763._004423.pool.root.1
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc       529 Dec 14 12:01 boinc_task_state.xml
[2025-12-14 12:02:49] -rw------- 1 boinc boinc      1019 Dec 14 12:01 memory_monitor_summary.json
[2025-12-14 12:02:49] -rw------- 1 boinc boinc    300969 Dec 14 12:01 log.47898763._004423.job.log.tgz.1
[2025-12-14 12:02:49] -rw------- 1 boinc boinc      7764 Dec 14 12:02 heartbeat.json
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc      8192 Dec 14 12:02 boinc_mmap_file
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc        27 Dec 14 12:02 wrapper_checkpoint.txt
[2025-12-14 12:02:49] -rw------- 1 boinc boinc      4628 Dec 14 12:02 pilotlog.txt
[2025-12-14 12:02:49] -rw------- 1 boinc boinc    899512 Dec 14 12:02 log.47898763._004423.job.log.1
[2025-12-14 12:02:49] -rw------- 1 boinc boinc       357 Dec 14 12:02 output.list
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc       620 Dec 14 12:02 runtime_log
[2025-12-14 12:02:49] -rw------- 1 boinc boinc   1218560 Dec 14 12:02 result.tar.gz
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc      8902 Dec 14 12:02 runtime_log.err
[2025-12-14 12:02:49] -rw------- 1 boinc boinc       660 Dec 14 12:02 6ywLDmF7co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEBPKDmjHOcGm.diag
[2025-12-14 12:02:49] -rw-r--r-- 1 boinc boinc     12355 Dec 14 12:02 stderr.txt
[2025-12-14 12:02:49] HITS file was successfully produced:
[2025-12-14 12:02:49] -rw------- 1 boinc boinc 228707336 Dec 14 12:01 shared/HITS.pool.root.1
[2025-12-14 12:02:49]  *** Contents of shared directory: ***
[2025-12-14 12:02:49] total 444616
[2025-12-14 12:02:49] -rw-r--r-- 2 boinc boinc 224736344 Dec 14 10:18 ATLAS.root_0
[2025-12-14 12:02:49] -rw-r--r-- 2 boinc boinc    592400 Dec 14 10:18 input.tar.gz
[2025-12-14 12:02:49] -rw-r--r-- 2 boinc boinc     15847 Dec 14 10:18 start_atlas.sh
[2025-12-14 12:02:49] -rw------- 1 boinc boinc 228707336 Dec 14 12:01 HITS.pool.root.1
[2025-12-14 12:02:49] -rw------- 1 boinc boinc   1218560 Dec 14 12:02 result.tar.gz
12:02:51 (839819): run_atlas exited; CPU time 23713.879255
12:02:51 (839819): called boinc_finish(0)

</stderr_txt>
]]>

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