Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:13:50 (12222): wrapper (7.7.26015): starting
01:13:50 (12222): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 01:13:50] Arguments: --nthreads 12
[2025-12-14 01:13:50] Threads: 12
[2025-12-14 01:13:50] Checking for CVMFS
[2025-12-14 01:13:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 01:13:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 01:13:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 01:13:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 01:13:50] 2.11.2.0 2925 313227 96316 153986 4 1 16714758 20275200 1 130560 1 138725222 99.967 18192444 15180 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 01:13:50] CVMFS is ok
[2025-12-14 01:13:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 01:13:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 01:13:50] Further information can be found at the LHC@home message board.
[2025-12-14 01:13:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 01:13:50] Checking for apptainer binary...
[2025-12-14 01:13:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 01:13:50] Running /usr/bin/apptainer --version
[2025-12-14 01:13:51] apptainer version 1.3.2-1.el7
[2025-12-14 01:13:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 01:13:52] c-205-9.aglt2.org
[2025-12-14 01:13:52] apptainer works
[2025-12-14 01:13:52] Set ATHENA_PROC_NUMBER=12
[2025-12-14 01:13:52] Set ATHENA_CORE_NUMBER=12
[2025-12-14 01:13:52] Starting ATLAS job with PandaID=6929260402
[2025-12-14 01:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 02:51:23]  *** The last 200 lines of the pilot log: ***
[2025-12-14 02:51:23]  storage_token=
[2025-12-14 02:51:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929260402/log.47898763._000307.job.log.tgz.1
[2025-12-14 02:51:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/50/log.47898763._000307.job.log.tgz.1
[2025-12-14 02:51:23]  workdir=None
[2025-12-14 02:51:23] ]
[2025-12-14 02:51:23] 2025-12-14 07:50:25,340 | INFO     | transferring file log.47898763._000307.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929260402/log.47898763._000307.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 02:51:23] 2025-12-14 07:50:25,341 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929260402/log.47898763._000307.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._000307.job
[2025-12-14 02:51:23] 2025-12-14 07:50:25,364 | INFO     | adding to output.list: log.47898763._000307.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/50/log.47898763._000307.job.log.tg
[2025-12-14 02:51:23] 2025-12-14 07:50:25,365 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 02:51:23] 2025-12-14 07:50:25,365 | INFO     | summary of transferred files:
[2025-12-14 02:51:23] 2025-12-14 07:50:25,365 | INFO     |  -- lfn=log.47898763._000307.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 02:51:23] 2025-12-14 07:50:25,365 | INFO     | stage-out finished correctly
[2025-12-14 02:51:23] 2025-12-14 07:50:25,663 | INFO     | PID=15958 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 02:51:23] 2025-12-14 07:50:25,667 | WARNING  | process 22387 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 02:51:23] 2025-12-14 07:50:25,667 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929260402/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 02:51:23] 2025-12-14 07:50:25,755 | INFO     | number of running child processes to parent process 22387: 1
[2025-12-14 02:51:23] 2025-12-14 07:50:25,755 | INFO     | maximum number of monitored processes: 6
[2025-12-14 02:51:23] 2025-12-14 07:50:26,665 | INFO     | time since job start (5779s) is within the limit (174528.0s)
[2025-12-14 02:51:23] 2025-12-14 07:50:27,504 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 02:51:23] 2025-12-14 07:50:28,258 | INFO     | monitor loop #427: job 0:6929260402 is in state 'finished'
[2025-12-14 02:51:23] 2025-12-14 07:50:28,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:51:23] 2025-12-14 07:50:28,670 | INFO     | time since job start (5781s) is within the limit (174528.0s)
[2025-12-14 02:51:23] 2025-12-14 07:50:29,973 | INFO     | job 6929260402 has state=finished
[2025-12-14 02:51:23] 2025-12-14 07:50:29,973 | INFO     | preparing for final server update for job 6929260402 in state='finished'
[2025-12-14 02:51:23] 2025-12-14 07:50:29,974 | INFO     | this job has now completed (state=finished)
[2025-12-14 02:51:23] 2025-12-14 07:50:29,974 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 02:51:23] 2025-12-14 07:50:29,974 | INFO     | log transfer has been attempted: DONE
[2025-12-14 02:51:23] 2025-12-14 07:50:29,974 | INFO     | job 6929260402 has finished - writing final server update
[2025-12-14 02:51:23] 2025-12-14 07:50:29,975 | INFO     | total number of processed events: 400 (read)
[2025-12-14 02:51:23] 2025-12-14 07:50:29,975 | INFO     | executing command: lscpu
[2025-12-14 02:51:23] 2025-12-14 07:50:30,002 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 02:51:23] 2025-12-14 07:50:30,676 | INFO     | time since job start (5783s) is within the limit (174528.0s)
[2025-12-14 02:51:23] 2025-12-14 07:50:30,761 | INFO     | monitor loop #428: job 0:6929260402 is in state 'finished'
[2025-12-14 02:51:23] 2025-12-14 07:50:30,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:51:23] 2025-12-14 07:50:32,682 | INFO     | time since job start (5785s) is within the limit (174528.0s)
[2025-12-14 02:51:23] 2025-12-14 07:50:33,264 | INFO     | monitor loop #429: job 0:6929260402 is in state 'finished'
[2025-12-14 02:51:23] 2025-12-14 07:50:33,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:51:23] 2025-12-14 07:50:34,688 | INFO     | time since job start (5787s) is within the limit (174528.0s)
[2025-12-14 02:51:23] 2025-12-14 07:50:34,823 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 02:51:23] 2025-12-14 07:50:34,826 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-14 02:51:23] 2025-12-14 07:50:34,829 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929260402/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 02:51:23] 2025-12-14 07:50:34,830 | INFO     | extracted standard info from prmon json
[2025-12-14 02:51:23] 2025-12-14 07:50:34,830 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 02:51:23] 2025-12-14 07:50:34,830 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 02:51:23] 2025-12-14 07:50:34,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 02:51:23] 2025-12-14 07:50:34,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 02:51:23] 2025-12-14 07:50:34,832 | INFO     | fitting pss+swap vs Time
[2025-12-14 02:51:23] 2025-12-14 07:50:34,832 | INFO     | sum of square deviations: 211285822.0
[2025-12-14 02:51:23] 2025-12-14 07:50:34,833 | INFO     | sum of deviations: -13420418460.0
[2025-12-14 02:51:23] 2025-12-14 07:50:34,833 | INFO     | mean x: 1765695834.5
[2025-12-14 02:51:23] 2025-12-14 07:50:34,833 | INFO     | mean y: 2812874.3636363638
[2025-12-14 02:51:23] 2025-12-14 07:50:34,833 | INFO     | intersect: 112155993564.68419
[2025-12-14 02:51:23] 2025-12-14 07:50:34,833 | INFO     | chi2: 0.10597651984714167
[2025-12-14 02:51:23] 2025-12-14 07:50:34,833 | INFO     | current memory leak: -63.52 B/s (using 88 data points, chi2=0.11)
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | could have reported an average CPU frequency of 2125 MHz (7 samples)
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | ..............................
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | . Timing measurements:
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | . get job = 0 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | . initial setup = 2 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | . payload setup = 7 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | . stage-in = 0 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,834 | INFO     | . payload execution = 5749 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,835 | INFO     | . stage-out = 0 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,835 | INFO     | . log creation = 0 s
[2025-12-14 02:51:23] 2025-12-14 07:50:34,835 | INFO     | ..............................
[2025-12-14 02:51:23] 2025-12-14 07:50:35,412 | INFO     | 
[2025-12-14 02:51:23] 2025-12-14 07:50:35,412 | INFO     | job summary report
[2025-12-14 02:51:23] 2025-12-14 07:50:35,412 | INFO     | --------------------------------------------------
[2025-12-14 02:51:23] 2025-12-14 07:50:35,412 | INFO     | PanDA job id: 6929260402
[2025-12-14 02:51:23] 2025-12-14 07:50:35,413 | INFO     | task id: 47898763
[2025-12-14 02:51:23] 2025-12-14 07:50:35,413 | INFO     | errors: (none)
[2025-12-14 02:51:23] 2025-12-14 07:50:35,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 02:51:23] 2025-12-14 07:50:35,413 | INFO     | pilot state: finished 
[2025-12-14 02:51:23] 2025-12-14 07:50:35,413 | INFO     | transexitcode: 0
[2025-12-14 02:51:23] 2025-12-14 07:50:35,413 | INFO     | exeerrorcode: 0
[2025-12-14 02:51:23] 2025-12-14 07:50:35,414 | INFO     | exeerrordiag: 
[2025-12-14 02:51:23] 2025-12-14 07:50:35,414 | INFO     | exitcode: 0
[2025-12-14 02:51:23] 2025-12-14 07:50:35,414 | INFO     | exitmsg: OK
[2025-12-14 02:51:23] 2025-12-14 07:50:35,414 | INFO     | cpuconsumptiontime: 63497 s
[2025-12-14 02:51:23] 2025-12-14 07:50:35,414 | INFO     | nevents: 400
[2025-12-14 02:51:23] 2025-12-14 07:50:35,414 | INFO     | neventsw: 0
[2025-12-14 02:51:23] 2025-12-14 07:50:35,415 | INFO     | pid: 22387
[2025-12-14 02:51:23] 2025-12-14 07:50:35,415 | INFO     | pgrp: 22387
[2025-12-14 02:51:23] 2025-12-14 07:50:35,415 | INFO     | corecount: 12
[2025-12-14 02:51:23] 2025-12-14 07:50:35,415 | INFO     | event service: False
[2025-12-14 02:51:23] 2025-12-14 07:50:35,415 | INFO     | sizes: {0: 2283947, 1: 2283947, 5: 2284237, 11: 2284293, 5760: 2310926, 5762: 2319924, 5764: 2320108, 5771: 2320302}
[2025-12-14 02:51:23] 2025-12-14 07:50:35,415 | INFO     | --------------------------------------------------
[2025-12-14 02:51:23] 2025-12-14 07:50:35,416 | INFO     | 
[2025-12-14 02:51:23] 2025-12-14 07:50:35,416 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 02:51:23] 2025-12-14 07:50:35,452 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,453 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,453 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,453 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,453 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,454 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,454 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,454 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,454 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,454 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,454 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,456 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 02:51:23] 2025-12-14 07:50:35,456 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 02:51:23] 2025-12-14 07:50:35,456 | INFO     | job 6929260402 has completed (purged errors)
[2025-12-14 02:51:23] 2025-12-14 07:50:35,457 | INFO     | overall cleanup function is called
[2025-12-14 02:51:23] 2025-12-14 07:50:36,465 | INFO     | --- collectZombieJob: --- 10, [22387]
[2025-12-14 02:51:23] 2025-12-14 07:50:36,465 | INFO     | zombie collector waiting for pid 22387
[2025-12-14 02:51:23] 2025-12-14 07:50:36,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 02:51:23] 2025-12-14 07:50:36,465 | INFO     | collected zombie processes
[2025-12-14 02:51:23] 2025-12-14 07:50:36,465 | INFO     | will attempt to kill all subprocesses of pid=22387
[2025-12-14 02:51:23] 2025-12-14 07:50:36,557 | INFO     | process IDs to be killed: [22387] (in reverse order)
[2025-12-14 02:51:23] 2025-12-14 07:50:36,607 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 02:51:23] 2025-12-14 07:50:36,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 02:51:23] 2025-12-14 07:50:36,611 | INFO     | did not find any defunct processes belonging to 22387
[2025-12-14 02:51:23] 2025-12-14 07:50:36,613 | INFO     | did not find any defunct processes belonging to 22387
[2025-12-14 02:51:23] 2025-12-14 07:50:36,613 | INFO     | ready for new job
[2025-12-14 02:51:23] 2025-12-14 07:50:36,613 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 02:51:23] 2025-12-14 07:50:36,614 | INFO     | ***************************************
[2025-12-14 02:51:23] 2025-12-14 07:50:36,614 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 02:51:23] 2025-12-14 07:50:36,614 | INFO     | ***************************************
[2025-12-14 02:51:23] 2025-12-14 07:50:36,614 | INFO     | 
[2025-12-14 02:51:23] 2025-12-14 07:50:36,615 | INFO     | architecture information:
[2025-12-14 02:51:23] 2025-12-14 07:50:36,615 | INFO     | executing command: cat /etc/os-release
[2025-12-14 02:51:23] 2025-12-14 07:50:36,631 | INFO     | cat /etc/os-release:
[2025-12-14 02:51:23] NAME="CentOS Linux"
[2025-12-14 02:51:23] VERSION="7 (Core)"
[2025-12-14 02:51:23] ID="centos"
[2025-12-14 02:51:23] ID_LIKE="rhel fedora"
[2025-12-14 02:51:23] VERSION_ID="7"
[2025-12-14 02:51:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 02:51:23] ANSI_COLOR="0;31"
[2025-12-14 02:51:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 02:51:23] HOME_URL="https://www.centos.org/"
[2025-12-14 02:51:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 02:51:23] 
[2025-12-14 02:51:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 02:51:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 02:51:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 02:51:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 02:51:23] 
[2025-12-14 02:51:23] 2025-12-14 07:50:36,632 | INFO     | ***************************************
[2025-12-14 02:51:23] 2025-12-14 07:50:37,135 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 02:51:23] 2025-12-14 07:50:37,153 | INFO     | sufficient remaining disk space (29324476416 B)
[2025-12-14 02:51:23] 2025-12-14 07:50:37,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 02:51:23] 2025-12-14 07:50:37,153 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 02:51:23] 2025-12-14 07:50:37,153 | INFO     | update_server=False
[2025-12-14 02:51:23] 2025-12-14 07:50:37,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 02:51:23] 2025-12-14 07:50:37,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:51:23] 2025-12-14 07:50:37,154 | INFO     | aborting loop
[2025-12-14 02:51:23] 2025-12-14 07:50:37,207 | INFO     | all data control threads have been joined
[2025-12-14 02:51:23] 2025-12-14 07:50:38,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 02:51:23] 2025-12-14 07:50:38,159 | INFO     | [job] retrieve thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:38,160 | INFO     | [job] job monitor thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:38,212 | INFO     | [data] control thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:38,380 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:38,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 02:51:23] 2025-12-14 07:50:38,609 | INFO     | all payload control threads have been joined
[2025-12-14 02:51:23] 2025-12-14 07:50:38,720 | INFO     | all job control threads have been joined
[2025-12-14 02:51:23] 2025-12-14 07:50:38,914 | INFO     | [data] copytool_in thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,019 | INFO     | [payload] validate_post thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,423 | INFO     | [payload] failed_post thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,491 | INFO     | [job] validate thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,505 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,543 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,611 | INFO     | [payload] control thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,723 | INFO     | [job] control thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:39,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:51:23] 2025-12-14 07:50:40,465 | INFO     | [data] copytool_out thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:40,924 | INFO     | [job] queue monitor thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:42,098 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:50:48,010 | INFO     | job.realtimelogging is not enabled
[2025-12-14 02:51:23] 2025-12-14 07:50:49,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 02:51:23] 2025-12-14 07:51:07,891 | INFO     | PID=15958 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 02:51:23] 2025-12-14 07:51:07,891 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 02:51:23] 2025-12-14 07:51:07,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 02:51:23] 2025-12-14 07:51:07,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 02:51:23] 2025-12-14 07:51:16,443 | INFO     | [monitor] cgroup control has ended
[2025-12-14 02:51:23] 2025-12-14 07:51:18,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530535155520)>', '<ExcThread(monitor, started 140529492805376)>']
[2025-12-14 02:51:23] 2025-12-14 07:51:18,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 02:51:23] 2025-12-14 07:51:18,947 | INFO     | [monitor] control thread has ended
[2025-12-14 02:51:23] 2025-12-14 07:51:23,246 | INFO     | all workflow threads have been joined
[2025-12-14 02:51:23] 2025-12-14 07:51:23,246 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 02:51:23] 2025-12-14 07:51:23,246 | INFO     | traces error code: 0
[2025-12-14 02:51:23] 2025-12-14 07:51:23,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 02:51:23] 2025-12-14 07:51:23,335 [wrapper] ==== pilot stdout END ====
[2025-12-14 02:51:23] 2025-12-14 07:51:23,339 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 02:51:23] 2025-12-14 07:51:23,344 [wrapper] pilotpid: 15958
[2025-12-14 02:51:23] 2025-12-14 07:51:23,347 [wrapper] Pilot exit status: 0
[2025-12-14 02:51:23] 2025-12-14 07:51:23,362 [wrapper] pandaids: 6929260402
[2025-12-14 02:51:23] 2025-12-14 07:51:23,410 [wrapper] cleanup supervisor_pilot 21961 15959
[2025-12-14 02:51:23] 2025-12-14 07:51:23,416 [wrapper] Test setup, not cleaning
[2025-12-14 02:51:23] 2025-12-14 07:51:23,420 [wrapper] apfmon messages muted
[2025-12-14 02:51:23] 2025-12-14 07:51:23,423 [wrapper] ==== wrapper stdout END ====
[2025-12-14 02:51:23] 2025-12-14 07:51:23,428 [wrapper] ==== wrapper stderr END ====
[2025-12-14 02:51:23]  *** Error codes and diagnostics ***
[2025-12-14 02:51:23]     "exeErrorCode": 0,
[2025-12-14 02:51:23]     "exeErrorDiag": "",
[2025-12-14 02:51:23]     "pilotErrorCode": 0,
[2025-12-14 02:51:23]     "pilotErrorDiag": "",
[2025-12-14 02:51:23]  *** Listing of results directory ***
[2025-12-14 02:51:23] total 432900
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:38 queuedata.json
[2025-12-14 02:51:23] -rwx------ 1 boincer umatlas     36322 Dec 13 04:38 runpilot2-wrapper.sh
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas       100 Dec 14 01:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 02:51:23] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 01:13 run_atlas
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas       105 Dec 14 01:13 job.xml
[2025-12-14 02:51:23] -rw-r--r-- 2 boincer umatlas 224987961 Dec 14 01:13 EVNT.47898761._000013.pool.root.1
[2025-12-14 02:51:23] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 01:13 start_atlas.sh
[2025-12-14 02:51:23] drwxrwx--x 2 boincer umatlas      4096 Dec 14 01:13 shared
[2025-12-14 02:51:23] -rw-r--r-- 2 boincer umatlas    592384 Dec 14 01:13 input.tar.gz
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas         0 Dec 14 01:13 boinc_lockfile
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas      2502 Dec 14 01:13 pandaJob.out
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas        57 Dec 14 01:13 setup.sh.local
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas    991736 Dec 14 01:14 agis_schedconf.cvmfs.json
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas   1516240 Dec 14 01:14 agis_ddmendpoints.agis.ALL.json
[2025-12-14 02:51:23] drwx------ 5 boincer umatlas      4096 Dec 14 01:14 pilot3
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 02:45 init_data.xml
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas 211941824 Dec 14 02:49 HITS.47898763._000307.pool.root.1
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas       529 Dec 14 02:50 boinc_task_state.xml
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas      1048 Dec 14 02:50 memory_monitor_summary.json
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas    394562 Dec 14 02:50 log.47898763._000307.job.log.tgz.1
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas        95 Dec 14 02:50 pilot_heartbeat.json
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas      7844 Dec 14 02:50 heartbeat.json
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 02:51 boinc_mmap_file
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas        27 Dec 14 02:51 wrapper_checkpoint.txt
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas      4818 Dec 14 02:51 pilotlog.txt
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas    823974 Dec 14 02:51 log.47898763._000307.job.log.1
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas       357 Dec 14 02:51 output.list
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas       620 Dec 14 02:51 runtime_log
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas   1239040 Dec 14 02:51 result.tar.gz
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas      9339 Dec 14 02:51 runtime_log.err
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas       658 Dec 14 02:51 DmULDmNGbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2eSKDmsvgxtm.diag
[2025-12-14 02:51:23] -rw-r--r-- 1 boincer umatlas     22353 Dec 14 02:51 stderr.txt
[2025-12-14 02:51:23] HITS file was successfully produced:
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas 211941824 Dec 14 02:49 shared/HITS.pool.root.1
[2025-12-14 02:51:23]  *** Contents of shared directory: ***
[2025-12-14 02:51:23] total 428504
[2025-12-14 02:51:23] -rw-r--r-- 2 boincer umatlas 224987961 Dec 14 01:13 ATLAS.root_0
[2025-12-14 02:51:23] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 01:13 start_atlas.sh
[2025-12-14 02:51:23] -rw-r--r-- 2 boincer umatlas    592384 Dec 14 01:13 input.tar.gz
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas 211941824 Dec 14 02:49 HITS.pool.root.1
[2025-12-14 02:51:23] -rw------- 1 boincer umatlas   1239040 Dec 14 02:51 result.tar.gz
02:51:25 (12222): run_atlas exited; CPU time 63479.799740
02:51:25 (12222): called boinc_finish(0)

</stderr_txt>
]]>

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