Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:59:08 (1041983): wrapper (7.7.26015): starting
15:59:08 (1041983): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 15:59:08] Arguments: --nthreads 4
[2025-12-14 15:59:08] Threads: 4
[2025-12-14 15:59:08] Checking for CVMFS
[2025-12-14 15:59:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 15:59:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 15:59:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 15:59:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 15:59:08] 2.9.2.0 473331 1811 90196 153998 0 57 34214018 36864000 0 130560 0 1489848 99.991 66862 11869 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 15:59:08] CVMFS is ok
[2025-12-14 15:59:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 15:59:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 15:59:08] Further information can be found at the LHC@home message board.
[2025-12-14 15:59:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 15:59:08] Checking for apptainer binary...
[2025-12-14 15:59:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 15:59:08] Running /usr/bin/apptainer --version
[2025-12-14 15:59:08] apptainer version 1.4.1-1.1
[2025-12-14 15:59:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 15:59:08] thA381
[2025-12-14 15:59:08] apptainer works
[2025-12-14 15:59:08] Set ATHENA_PROC_NUMBER=4
[2025-12-14 15:59:08] Set ATHENA_CORE_NUMBER=4
[2025-12-14 15:59:08] Starting ATLAS job with PandaID=6929263740
[2025-12-14 15:59:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 17:40:30]  *** The last 200 lines of the pilot log: ***
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | job 6929263740 has completed (purged errors)
[2025-12-14 17:40:30] 2025-12-14 16:39:54,475 | INFO     | overall cleanup function is called
[2025-12-14 17:40:30] 2025-12-14 16:39:54,700 | INFO     | PID=1045773 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 17:40:30] 2025-12-14 16:39:55,477 | INFO     | --- collectZombieJob: --- 10, [1052347]
[2025-12-14 17:40:30] 2025-12-14 16:39:55,478 | INFO     | zombie collector waiting for pid 1052347
[2025-12-14 17:40:30] 2025-12-14 16:39:55,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 17:40:30] 2025-12-14 16:39:55,478 | INFO     | collected zombie processes
[2025-12-14 17:40:30] 2025-12-14 16:39:55,478 | INFO     | will attempt to kill all subprocesses of pid=1052347
[2025-12-14 17:40:30] 2025-12-14 16:39:55,522 | INFO     | process IDs to be killed: [1052347] (in reverse order)
[2025-12-14 17:40:30] 2025-12-14 16:39:55,554 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 17:40:30] 2025-12-14 16:39:55,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 17:40:30] 2025-12-14 16:39:55,557 | INFO     | did not find any defunct processes belonging to 1052347
[2025-12-14 17:40:30] 2025-12-14 16:39:55,558 | INFO     | did not find any defunct processes belonging to 1052347
[2025-12-14 17:40:30] 2025-12-14 16:39:55,558 | INFO     | ready for new job
[2025-12-14 17:40:30] 2025-12-14 16:39:55,558 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 17:40:30] 2025-12-14 16:39:55,559 | INFO     | ***************************************
[2025-12-14 17:40:30] 2025-12-14 16:39:55,559 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 17:40:30] 2025-12-14 16:39:55,559 | INFO     | ***************************************
[2025-12-14 17:40:30] 2025-12-14 16:39:55,559 | INFO     | 
[2025-12-14 17:40:30] 2025-12-14 16:39:55,559 | INFO     | architecture information:
[2025-12-14 17:40:30] 2025-12-14 16:39:55,560 | INFO     | executing command: cat /etc/os-release
[2025-12-14 17:40:30] 2025-12-14 16:39:55,573 | INFO     | cat /etc/os-release:
[2025-12-14 17:40:30] NAME="CentOS Linux"
[2025-12-14 17:40:30] VERSION="7 (Core)"
[2025-12-14 17:40:30] ID="centos"
[2025-12-14 17:40:30] ID_LIKE="rhel fedora"
[2025-12-14 17:40:30] VERSION_ID="7"
[2025-12-14 17:40:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 17:40:30] ANSI_COLOR="0;31"
[2025-12-14 17:40:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 17:40:30] HOME_URL="https://www.centos.org/"
[2025-12-14 17:40:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 17:40:30] 
[2025-12-14 17:40:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 17:40:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 17:40:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 17:40:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 17:40:30] 
[2025-12-14 17:40:30] 2025-12-14 16:39:55,574 | INFO     | ***************************************
[2025-12-14 17:40:30] 2025-12-14 16:39:56,077 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | INFO     | sufficient remaining disk space (225193230336 B)
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | INFO     | update_server=False
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 17:40:30] 2025-12-14 16:39:56,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 17:40:30] 2025-12-14 16:39:56,546 | INFO     | all data control threads have been joined
[2025-12-14 17:40:30] 2025-12-14 16:39:56,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 17:40:30] 2025-12-14 16:39:56,701 | INFO     | aborting loop
[2025-12-14 17:40:30] 2025-12-14 16:39:56,724 | INFO     | all job control threads have been joined
[2025-12-14 17:40:30] 2025-12-14 16:39:57,101 | INFO     | [job] retrieve thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,101 | INFO     | [job] queue monitor thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,149 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,458 | INFO     | all payload control threads have been joined
[2025-12-14 17:40:30] 2025-12-14 16:39:57,552 | INFO     | [data] control thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,605 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,613 | INFO     | [data] copytool_in thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,707 | INFO     | [job] job monitor thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,731 | INFO     | [job] control thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,785 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:57,883 | INFO     | [payload] failed_post thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:58,102 | INFO     | [data] copytool_out thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:58,464 | INFO     | [payload] control thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:58,502 | INFO     | [job] validate thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:58,520 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:58,558 | INFO     | [payload] validate_post thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:39:58,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 17:40:30] 2025-12-14 16:40:02,697 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 17:40:30] 2025-12-14 16:40:23,290 | INFO     | [monitor] cgroup control has ended
[2025-12-14 17:40:30] 2025-12-14 16:40:25,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140177156831040)>', '<ExcThread(monitor, started 140175770375936)>']
[2025-12-14 17:40:30] 2025-12-14 16:40:26,827 | INFO     | PID=1045773 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 17:40:30] 2025-12-14 16:40:26,827 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 17:40:30] 2025-12-14 16:40:26,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 17:40:30] 2025-12-14 16:40:26,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 17:40:30] 2025-12-14 16:40:26,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 17:40:30] 2025-12-14 16:40:26,828 | INFO     | [monitor] control thread has ended
[2025-12-14 17:40:30] 2025-12-14 16:40:30,077 | INFO     | all workflow threads have been joined
[2025-12-14 17:40:30] 2025-12-14 16:40:30,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 17:40:30] 2025-12-14 16:40:30,078 | INFO     | traces error code: 0
[2025-12-14 17:40:30] 2025-12-14 16:40:30,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 17:40:30] 2025-12-14 16:40:30,161 [wrapper] ==== pilot stdout END ====
[2025-12-14 17:40:30] 2025-12-14 16:40:30,165 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 17:40:30] 2025-12-14 16:40:30,169 [wrapper] pilotpid: 1045773
[2025-12-14 17:40:30] 2025-12-14 16:40:30,173 [wrapper] Pilot exit status: 0
[2025-12-14 17:40:30] 2025-12-14 16:40:30,184 [wrapper] pandaids: 6929263740
[2025-12-14 17:40:30] 2025-12-14 16:40:30,207 [wrapper] cleanup supervisor_pilot 1064618 1045774
[2025-12-14 17:40:30] 2025-12-14 16:40:30,210 [wrapper] Test setup, not cleaning
[2025-12-14 17:40:30] 2025-12-14 16:40:30,214 [wrapper] apfmon messages muted
[2025-12-14 17:40:30] 2025-12-14 16:40:30,218 [wrapper] ==== wrapper stdout END ====
[2025-12-14 17:40:30] 2025-12-14 16:40:30,221 [wrapper] ==== wrapper stderr END ====
[2025-12-14 17:40:30]  *** Error codes and diagnostics ***
[2025-12-14 17:40:30]     "exeErrorCode": 0,
[2025-12-14 17:40:30]     "exeErrorDiag": "",
[2025-12-14 17:40:30]     "pilotErrorCode": 0,
[2025-12-14 17:40:30]     "pilotErrorDiag": "",
[2025-12-14 17:40:30]  *** Listing of results directory ***
[2025-12-14 17:40:30] total 441472
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc    579449 Dec 13 11:01 pilot3.tar.gz
[2025-12-14 17:40:30] -rwx------ 1 boinc boinc     36322 Dec 13 11:05 runpilot2-wrapper.sh
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc      5112 Dec 13 11:09 queuedata.json
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc       100 Dec 14 15:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 17:40:30] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 15:59 run_atlas
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc       105 Dec 14 15:59 job.xml
[2025-12-14 17:40:30] -rw-r--r-- 2 boinc boinc 224968525 Dec 14 15:59 EVNT.47898761._000093.pool.root.1
[2025-12-14 17:40:30] drwxrwx--x 2 boinc boinc      4096 Dec 14 15:59 shared
[2025-12-14 17:40:30] -rw-r--r-- 2 boinc boinc    592392 Dec 14 15:59 input.tar.gz
[2025-12-14 17:40:30] -rw-r--r-- 2 boinc boinc     15847 Dec 14 15:59 start_atlas.sh
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc         0 Dec 14 15:59 boinc_setup_complete
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc      6376 Dec 14 15:59 init_data.xml
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc         0 Dec 14 15:59 boinc_lockfile
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc      2504 Dec 14 15:59 pandaJob.out
[2025-12-14 17:40:30] -rw------- 1 boinc boinc    991024 Dec 14 15:59 agis_schedconf.cvmfs.json
[2025-12-14 17:40:30] -rw------- 1 boinc boinc   1516240 Dec 14 15:59 agis_ddmendpoints.agis.ALL.json
[2025-12-14 17:40:30] drwx------ 5 boinc boinc      4096 Dec 14 15:59 pilot3
[2025-12-14 17:40:30] -rw------- 1 boinc boinc 220882072 Dec 14 17:39 HITS.47898763._001685.pool.root.1
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc       529 Dec 14 17:39 boinc_task_state.xml
[2025-12-14 17:40:30] -rw------- 1 boinc boinc      1018 Dec 14 17:39 memory_monitor_summary.json
[2025-12-14 17:40:30] -rw------- 1 boinc boinc    281605 Dec 14 17:39 log.47898763._001685.job.log.tgz.1
[2025-12-14 17:40:30] -rw------- 1 boinc boinc        95 Dec 14 17:39 pilot_heartbeat.json
[2025-12-14 17:40:30] -rw------- 1 boinc boinc      7750 Dec 14 17:39 heartbeat.json
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc      8192 Dec 14 17:40 boinc_mmap_file
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc        27 Dec 14 17:40 wrapper_checkpoint.txt
[2025-12-14 17:40:30] -rw------- 1 boinc boinc      4752 Dec 14 17:40 pilotlog.txt
[2025-12-14 17:40:30] -rw------- 1 boinc boinc    875912 Dec 14 17:40 log.47898763._001685.job.log.1
[2025-12-14 17:40:30] -rw------- 1 boinc boinc       357 Dec 14 17:40 output.list
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc       620 Dec 14 17:40 runtime_log
[2025-12-14 17:40:30] -rw------- 1 boinc boinc   1177600 Dec 14 17:40 result.tar.gz
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc      8897 Dec 14 17:40 runtime_log.err
[2025-12-14 17:40:30] -rw------- 1 boinc boinc       659 Dec 14 17:40 EQFMDmbgbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU1SKDmrE7pUn.diag
[2025-12-14 17:40:30] -rw-r--r-- 1 boinc boinc     11947 Dec 14 17:40 stderr.txt
[2025-12-14 17:40:30] HITS file was successfully produced:
[2025-12-14 17:40:30] -rw------- 1 boinc boinc 220882072 Dec 14 17:39 shared/HITS.pool.root.1
[2025-12-14 17:40:30]  *** Contents of shared directory: ***
[2025-12-14 17:40:30] total 437160
[2025-12-14 17:40:30] -rw-r--r-- 2 boinc boinc 224968525 Dec 14 15:59 ATLAS.root_0
[2025-12-14 17:40:30] -rw-r--r-- 2 boinc boinc    592392 Dec 14 15:59 input.tar.gz
[2025-12-14 17:40:30] -rw-r--r-- 2 boinc boinc     15847 Dec 14 15:59 start_atlas.sh
[2025-12-14 17:40:30] -rw------- 1 boinc boinc 220882072 Dec 14 17:39 HITS.pool.root.1
[2025-12-14 17:40:30] -rw------- 1 boinc boinc   1177600 Dec 14 17:40 result.tar.gz
17:40:31 (1041983): run_atlas exited; CPU time 23057.544617
17:40:31 (1041983): called boinc_finish(0)

</stderr_txt>
]]>

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