Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:12:59 (31525): wrapper (7.7.26015): starting
01:12:59 (31525): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 01:12:59] Arguments: --nthreads 12
[2025-12-14 01:12:59] Threads: 12
[2025-12-14 01:12:59] Checking for CVMFS
[2025-12-14 01:12:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 01:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 01:13:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 01:13:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 01:13:00] 2.11.2.0 2914 313227 95308 153985 3 59 15673627 20275200 1 130560 1 138504871 99.963 18304116 15001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 01:13:00] CVMFS is ok
[2025-12-14 01:13:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 01:13:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 01:13:00] Further information can be found at the LHC@home message board.
[2025-12-14 01:13:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 01:13:00] Checking for apptainer binary...
[2025-12-14 01:13:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 01:13:00] Running /usr/bin/apptainer --version
[2025-12-14 01:13:00] apptainer version 1.3.2-1.el7
[2025-12-14 01:13:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 01:13:01] c-205-5.aglt2.org
[2025-12-14 01:13:01] apptainer works
[2025-12-14 01:13:01] Set ATHENA_PROC_NUMBER=12
[2025-12-14 01:13:01] Set ATHENA_CORE_NUMBER=12
[2025-12-14 01:13:01] Starting ATLAS job with PandaID=6929308741
[2025-12-14 01:13:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 02:31:36]  *** The last 200 lines of the pilot log: ***
[2025-12-14 02:31:36]  storage_token=
[2025-12-14 02:31:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929308741/log.47886933._001886.job.log.tgz.1
[2025-12-14 02:31:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/81/log.47886933._001886.job.log.tgz.1
[2025-12-14 02:31:36]  workdir=None
[2025-12-14 02:31:36] ]
[2025-12-14 02:31:36] 2025-12-14 07:30:53,207 | INFO     | transferring file log.47886933._001886.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929308741/log.47886933._001886.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 02:31:36] 2025-12-14 07:30:53,207 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929308741/log.47886933._001886.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886933._001886.job
[2025-12-14 02:31:36] 2025-12-14 07:30:53,229 | INFO     | adding to output.list: log.47886933._001886.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/81/81/log.47886933._001886.job.log.tg
[2025-12-14 02:31:36] 2025-12-14 07:30:53,230 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 02:31:36] 2025-12-14 07:30:53,231 | INFO     | summary of transferred files:
[2025-12-14 02:31:36] 2025-12-14 07:30:53,231 | INFO     |  -- lfn=log.47886933._001886.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 02:31:36] 2025-12-14 07:30:53,231 | INFO     | stage-out finished correctly
[2025-12-14 02:31:36] 2025-12-14 07:30:54,948 | INFO     | time since job start (4656s) is within the limit (174528.0s)
[2025-12-14 02:31:36] 2025-12-14 07:30:55,353 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 02:31:36] 2025-12-14 07:30:56,954 | INFO     | time since job start (4658s) is within the limit (174528.0s)
[2025-12-14 02:31:36] 2025-12-14 07:30:57,874 | INFO     | job 6929308741 has state=finished
[2025-12-14 02:31:36] 2025-12-14 07:30:57,875 | INFO     | preparing for final server update for job 6929308741 in state='finished'
[2025-12-14 02:31:36] 2025-12-14 07:30:57,875 | INFO     | this job has now completed (state=finished)
[2025-12-14 02:31:36] 2025-12-14 07:30:57,876 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 02:31:36] 2025-12-14 07:30:57,876 | INFO     | log transfer has been attempted: DONE
[2025-12-14 02:31:36] 2025-12-14 07:30:57,876 | INFO     | job 6929308741 has finished - writing final server update
[2025-12-14 02:31:36] 2025-12-14 07:30:57,877 | INFO     | total number of processed events: 400 (read)
[2025-12-14 02:31:36] 2025-12-14 07:30:57,878 | INFO     | executing command: lscpu
[2025-12-14 02:31:36] 2025-12-14 07:30:57,904 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 02:31:36] 2025-12-14 07:30:58,165 | WARNING  | process 9730 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 02:31:36] 2025-12-14 07:30:58,165 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929308741/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 02:31:36] 2025-12-14 07:30:58,261 | INFO     | number of running child processes to parent process 9730: 1
[2025-12-14 02:31:36] 2025-12-14 07:30:58,261 | INFO     | maximum number of monitored processes: 6
[2025-12-14 02:31:36] 2025-12-14 07:30:58,959 | INFO     | time since job start (4660s) is within the limit (174528.0s)
[2025-12-14 02:31:36] 2025-12-14 07:31:00,082 | INFO     | PID=3335 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 02:31:36] 2025-12-14 07:31:00,764 | INFO     | monitor loop #347: job 0:6929308741 is in state 'finished'
[2025-12-14 02:31:36] 2025-12-14 07:31:00,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:31:36] 2025-12-14 07:31:01,083 | INFO     | time since job start (4663s) is within the limit (174528.0s)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,088 | INFO     | time since job start (4665s) is within the limit (174528.0s)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,267 | INFO     | monitor loop #348: job 0:6929308741 is in state 'finished'
[2025-12-14 02:31:36] 2025-12-14 07:31:03,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,782 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 02:31:36] 2025-12-14 07:31:03,786 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-14 02:31:36] 2025-12-14 07:31:03,788 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929308741/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,789 | INFO     | extracted standard info from prmon json
[2025-12-14 02:31:36] 2025-12-14 07:31:03,789 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 02:31:36] 2025-12-14 07:31:03,789 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 02:31:36] 2025-12-14 07:31:03,789 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 02:31:36] 2025-12-14 07:31:03,789 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 02:31:36] 2025-12-14 07:31:03,791 | INFO     | fitting pss+swap vs Time
[2025-12-14 02:31:36] 2025-12-14 07:31:03,791 | INFO     | sum of square deviations: 101843770.0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,791 | INFO     | sum of deviations: -726591862.0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,792 | INFO     | mean x: 1765695207.0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,792 | INFO     | mean y: 2698110.1014492754
[2025-12-14 02:31:36] 2025-12-14 07:31:03,792 | INFO     | intersect: 12599833587.10319
[2025-12-14 02:31:36] 2025-12-14 07:31:03,792 | INFO     | chi2: 0.008407202113947057
[2025-12-14 02:31:36] 2025-12-14 07:31:03,792 | INFO     | current memory leak: -7.13 B/s (using 69 data points, chi2=0.01)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,792 | INFO     | could have reported an average CPU frequency of 2023 MHz (6 samples)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | ..............................
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . Timing measurements:
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . get job = 0 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . initial setup = 2 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . payload setup = 7 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . stage-in = 0 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . payload execution = 4626 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . stage-out = 0 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,793 | INFO     | . log creation = 0 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,794 | INFO     | ..............................
[2025-12-14 02:31:36] 2025-12-14 07:31:03,873 | INFO     | 
[2025-12-14 02:31:36] 2025-12-14 07:31:03,873 | INFO     | job summary report
[2025-12-14 02:31:36] 2025-12-14 07:31:03,873 | INFO     | --------------------------------------------------
[2025-12-14 02:31:36] 2025-12-14 07:31:03,874 | INFO     | PanDA job id: 6929308741
[2025-12-14 02:31:36] 2025-12-14 07:31:03,874 | INFO     | task id: 47886933
[2025-12-14 02:31:36] 2025-12-14 07:31:03,874 | INFO     | errors: (none)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,874 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 02:31:36] 2025-12-14 07:31:03,874 | INFO     | pilot state: finished 
[2025-12-14 02:31:36] 2025-12-14 07:31:03,874 | INFO     | transexitcode: 0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | exeerrorcode: 0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | exeerrordiag: 
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | exitcode: 0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | exitmsg: OK
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | cpuconsumptiontime: 50726 s
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | nevents: 400
[2025-12-14 02:31:36] 2025-12-14 07:31:03,875 | INFO     | neventsw: 0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,876 | INFO     | pid: 9730
[2025-12-14 02:31:36] 2025-12-14 07:31:03,876 | INFO     | pgrp: 9730
[2025-12-14 02:31:36] 2025-12-14 07:31:03,876 | INFO     | corecount: 12
[2025-12-14 02:31:36] 2025-12-14 07:31:03,876 | INFO     | event service: False
[2025-12-14 02:31:36] 2025-12-14 07:31:03,876 | INFO     | sizes: {0: 2283792, 1: 2283991, 6: 2284253, 11: 2284281, 4637: 2310402, 4638: 2319583, 4641: 2319583, 4649: 2319777}
[2025-12-14 02:31:36] 2025-12-14 07:31:03,876 | INFO     | --------------------------------------------------
[2025-12-14 02:31:36] 2025-12-14 07:31:03,877 | INFO     | 
[2025-12-14 02:31:36] 2025-12-14 07:31:03,877 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 02:31:36] 2025-12-14 07:31:03,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,904 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,904 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,905 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 02:31:36] 2025-12-14 07:31:03,905 | INFO     | job 6929308741 has completed (purged errors)
[2025-12-14 02:31:36] 2025-12-14 07:31:03,905 | INFO     | overall cleanup function is called
[2025-12-14 02:31:36] 2025-12-14 07:31:04,913 | INFO     | --- collectZombieJob: --- 10, [9730]
[2025-12-14 02:31:36] 2025-12-14 07:31:04,913 | INFO     | zombie collector waiting for pid 9730
[2025-12-14 02:31:36] 2025-12-14 07:31:04,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 02:31:36] 2025-12-14 07:31:04,914 | INFO     | collected zombie processes
[2025-12-14 02:31:36] 2025-12-14 07:31:04,914 | INFO     | will attempt to kill all subprocesses of pid=9730
[2025-12-14 02:31:36] 2025-12-14 07:31:05,004 | INFO     | process IDs to be killed: [9730] (in reverse order)
[2025-12-14 02:31:36] 2025-12-14 07:31:05,056 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 02:31:36] 2025-12-14 07:31:05,056 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 02:31:36] 2025-12-14 07:31:05,058 | INFO     | did not find any defunct processes belonging to 9730
[2025-12-14 02:31:36] 2025-12-14 07:31:05,061 | INFO     | did not find any defunct processes belonging to 9730
[2025-12-14 02:31:36] 2025-12-14 07:31:05,061 | INFO     | ready for new job
[2025-12-14 02:31:36] 2025-12-14 07:31:05,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 02:31:36] 2025-12-14 07:31:05,062 | INFO     | ***************************************
[2025-12-14 02:31:36] 2025-12-14 07:31:05,062 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 02:31:36] 2025-12-14 07:31:05,062 | INFO     | ***************************************
[2025-12-14 02:31:36] 2025-12-14 07:31:05,062 | INFO     | 
[2025-12-14 02:31:36] 2025-12-14 07:31:05,063 | INFO     | architecture information:
[2025-12-14 02:31:36] 2025-12-14 07:31:05,063 | INFO     | executing command: cat /etc/os-release
[2025-12-14 02:31:36] 2025-12-14 07:31:05,078 | INFO     | cat /etc/os-release:
[2025-12-14 02:31:36] NAME="CentOS Linux"
[2025-12-14 02:31:36] VERSION="7 (Core)"
[2025-12-14 02:31:36] ID="centos"
[2025-12-14 02:31:36] ID_LIKE="rhel fedora"
[2025-12-14 02:31:36] VERSION_ID="7"
[2025-12-14 02:31:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 02:31:36] ANSI_COLOR="0;31"
[2025-12-14 02:31:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 02:31:36] HOME_URL="https://www.centos.org/"
[2025-12-14 02:31:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 02:31:36] 
[2025-12-14 02:31:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 02:31:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 02:31:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 02:31:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 02:31:36] 
[2025-12-14 02:31:36] 2025-12-14 07:31:05,078 | INFO     | ***************************************
[2025-12-14 02:31:36] 2025-12-14 07:31:05,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 02:31:36] 2025-12-14 07:31:05,597 | INFO     | sufficient remaining disk space (29457645568 B)
[2025-12-14 02:31:36] 2025-12-14 07:31:05,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 02:31:36] 2025-12-14 07:31:05,598 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 02:31:36] 2025-12-14 07:31:05,598 | INFO     | update_server=False
[2025-12-14 02:31:36] 2025-12-14 07:31:05,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 02:31:36] 2025-12-14 07:31:05,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:31:36] 2025-12-14 07:31:05,770 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 02:31:36] 2025-12-14 07:31:05,771 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 02:31:36] 2025-12-14 07:31:05,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:31:36] 2025-12-14 07:31:05,771 | INFO     | will abort loop
[2025-12-14 02:31:36] 2025-12-14 07:31:05,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 02:31:36] 2025-12-14 07:31:06,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 02:31:36] 2025-12-14 07:31:06,600 | INFO     | [job] queue monitor thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:06,601 | INFO     | all data control threads have been joined
[2025-12-14 02:31:36] 2025-12-14 07:31:06,603 | INFO     | [job] retrieve thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:06,607 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:06,707 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:06,713 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:06,761 | INFO     | all payload control threads have been joined
[2025-12-14 02:31:36] 2025-12-14 07:31:06,776 | INFO     | [job] job monitor thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:06,853 | INFO     | all job control threads have been joined
[2025-12-14 02:31:36] 2025-12-14 07:31:07,089 | INFO     | [data] copytool_in thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:07,271 | INFO     | [payload] failed_post thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:07,574 | INFO     | [job] validate thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:07,606 | INFO     | [data] control thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:07,765 | INFO     | [payload] control thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:07,847 | INFO     | [payload] validate_post thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:07,858 | INFO     | [job] control thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:08,340 | INFO     | [data] copytool_out thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:09,944 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:16,279 | INFO     | job.realtimelogging is not enabled
[2025-12-14 02:31:36] 2025-12-14 07:31:17,284 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 02:31:36] 2025-12-14 07:31:25,723 | INFO     | [monitor] cgroup control has ended
[2025-12-14 02:31:36] 2025-12-14 07:31:27,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140595453081408)>', '<ExcThread(monitor, started 140594697443072)>']
[2025-12-14 02:31:36] 2025-12-14 07:31:32,062 | INFO     | all workflow threads have been joined
[2025-12-14 02:31:36] 2025-12-14 07:31:32,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 02:31:36] 2025-12-14 07:31:32,062 | INFO     | traces error code: 0
[2025-12-14 02:31:36] 2025-12-14 07:31:32,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 02:31:36] 2025-12-14 07:31:36,282 | INFO     | PID=3335 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 02:31:36] 2025-12-14 07:31:36,283 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 02:31:36] 2025-12-14 07:31:36,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 02:31:36] 2025-12-14 07:31:36,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 02:31:36] 2025-12-14 07:31:36,284 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 02:31:36] 2025-12-14 07:31:36,284 | INFO     | [monitor] control thread has ended
[2025-12-14 02:31:36] 2025-12-14 07:31:36,374 [wrapper] ==== pilot stdout END ====
[2025-12-14 02:31:36] 2025-12-14 07:31:36,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 02:31:36] 2025-12-14 07:31:36,383 [wrapper] pilotpid: 3335
[2025-12-14 02:31:36] 2025-12-14 07:31:36,386 [wrapper] Pilot exit status: 0
[2025-12-14 02:31:36] 2025-12-14 07:31:36,402 [wrapper] pandaids: 6929308741
[2025-12-14 02:31:36] 2025-12-14 07:31:36,443 [wrapper] cleanup supervisor_pilot  5701 3336
[2025-12-14 02:31:36] 2025-12-14 07:31:36,446 [wrapper] Test setup, not cleaning
[2025-12-14 02:31:36] 2025-12-14 07:31:36,450 [wrapper] apfmon messages muted
[2025-12-14 02:31:36] 2025-12-14 07:31:36,454 [wrapper] ==== wrapper stdout END ====
[2025-12-14 02:31:36] 2025-12-14 07:31:36,458 [wrapper] ==== wrapper stderr END ====
[2025-12-14 02:31:36]  *** Error codes and diagnostics ***
[2025-12-14 02:31:36]     "exeErrorCode": 0,
[2025-12-14 02:31:36]     "exeErrorDiag": "",
[2025-12-14 02:31:36]     "pilotErrorCode": 0,
[2025-12-14 02:31:36]     "pilotErrorDiag": "",
[2025-12-14 02:31:36]  *** Listing of results directory ***
[2025-12-14 02:31:36] total 337652
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 06:35 queuedata.json
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 06:35 pilot3.tar.gz
[2025-12-14 02:31:36] -rwx------ 1 boincer umatlas     36322 Dec 13 06:36 runpilot2-wrapper.sh
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas       100 Dec 14 01:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 02:31:36] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 01:12 run_atlas
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas       105 Dec 14 01:12 job.xml
[2025-12-14 02:31:36] -rw-r--r-- 2 boincer umatlas 190567481 Dec 14 01:12 EVNT.47886929._000076.pool.root.1
[2025-12-14 02:31:36] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 01:12 start_atlas.sh
[2025-12-14 02:31:36] drwxrwx--x 2 boincer umatlas      4096 Dec 14 01:12 shared
[2025-12-14 02:31:36] -rw-r--r-- 2 boincer umatlas    592395 Dec 14 01:12 input.tar.gz
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas         0 Dec 14 01:12 boinc_lockfile
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas      2512 Dec 14 01:13 pandaJob.out
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas        57 Dec 14 01:13 setup.sh.local
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas    991736 Dec 14 01:13 agis_schedconf.cvmfs.json
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas   1516240 Dec 14 01:13 agis_ddmendpoints.agis.ALL.json
[2025-12-14 02:31:36] drwx------ 5 boincer umatlas      4096 Dec 14 01:13 pilot3
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 02:30 init_data.xml
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas 149176592 Dec 14 02:30 HITS.47886933._001886.pool.root.1
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas      1044 Dec 14 02:30 memory_monitor_summary.json
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas       530 Dec 14 02:30 boinc_task_state.xml
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas    375550 Dec 14 02:30 log.47886933._001886.job.log.tgz.1
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas      7843 Dec 14 02:31 heartbeat.json
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 02:31 boinc_mmap_file
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas        27 Dec 14 02:31 wrapper_checkpoint.txt
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas       744 Dec 14 02:31 pilotlog.txt
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas        95 Dec 14 02:31 pilot_heartbeat.json
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas    673447 Dec 14 02:31 log.47886933._001886.job.log.1
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas       357 Dec 14 02:31 output.list
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas       620 Dec 14 02:31 runtime_log
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas   1064960 Dec 14 02:31 result.tar.gz
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas      9339 Dec 14 02:31 runtime_log.err
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas       658 Dec 14 02:31 d5LNDmz5co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmT0OKDm0V6Iwn.diag
[2025-12-14 02:31:36] -rw-r--r-- 1 boincer umatlas     22301 Dec 14 02:31 stderr.txt
[2025-12-14 02:31:36] HITS file was successfully produced:
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas 149176592 Dec 14 02:30 shared/HITS.pool.root.1
[2025-12-14 02:31:36]  *** Contents of shared directory: ***
[2025-12-14 02:31:36] total 333428
[2025-12-14 02:31:36] -rw-r--r-- 2 boincer umatlas 190567481 Dec 14 01:12 ATLAS.root_0
[2025-12-14 02:31:36] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 01:12 start_atlas.sh
[2025-12-14 02:31:36] -rw-r--r-- 2 boincer umatlas    592395 Dec 14 01:12 input.tar.gz
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas 149176592 Dec 14 02:30 HITS.pool.root.1
[2025-12-14 02:31:36] -rw------- 1 boincer umatlas   1064960 Dec 14 02:31 result.tar.gz
02:31:38 (31525): run_atlas exited; CPU time 50710.382427
02:31:38 (31525): called boinc_finish(0)

</stderr_txt>
]]>

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