Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:51:37 (459606): wrapper (7.7.26015): starting
16:51:37 (459606): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 16:51:37] Arguments: --nthreads 4
[2025-12-14 16:51:37] Threads: 4
[2025-12-14 16:51:37] Checking for CVMFS
[2025-12-14 16:51:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 16:51:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 16:51:37] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 16:51:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 16:51:38] 2.9.2.0 3107 1611 87476 154000 0 57 23628607 36864000 0 130560 0 1190886 99.992 54583 10580 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 16:51:38] CVMFS is ok
[2025-12-14 16:51:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 16:51:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 16:51:38] Further information can be found at the LHC@home message board.
[2025-12-14 16:51:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 16:51:38] Checking for apptainer binary...
[2025-12-14 16:51:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 16:51:38] Running /usr/bin/apptainer --version
[2025-12-14 16:51:38] apptainer version 1.4.1-1.1
[2025-12-14 16:51:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 16:51:38] magicA250
[2025-12-14 16:51:38] apptainer works
[2025-12-14 16:51:38] Set ATHENA_PROC_NUMBER=4
[2025-12-14 16:51:38] Set ATHENA_CORE_NUMBER=4
[2025-12-14 16:51:38] Starting ATLAS job with PandaID=6929266443
[2025-12-14 16:51:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 18:31:58]  *** The last 200 lines of the pilot log: ***
[2025-12-14 18:31:58] 2025-12-14 17:30:57,097 | INFO     | ***************************************
[2025-12-14 18:31:58] 2025-12-14 17:30:57,600 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | INFO     | sufficient remaining disk space (336337043456 B)
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | INFO     | update_server=False
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 18:31:58] 2025-12-14 17:30:57,617 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 18:31:58] 2025-12-14 17:30:57,666 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 18:31:58] 2025-12-14 17:30:57,666 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 18:31:58] 2025-12-14 17:30:57,667 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 18:31:58] 2025-12-14 17:30:57,667 | INFO     | will abort loop
[2025-12-14 18:31:58] 2025-12-14 17:30:57,700 | INFO     | all job control threads have been joined
[2025-12-14 18:31:58] 2025-12-14 17:30:57,880 | INFO     | all data control threads have been joined
[2025-12-14 18:31:58] 2025-12-14 17:30:58,270 | INFO     | all payload control threads have been joined
[2025-12-14 18:31:58] 2025-12-14 17:30:58,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 18:31:58] 2025-12-14 17:30:58,623 | INFO     | [job] retrieve thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:58,623 | INFO     | [job] queue monitor thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:58,672 | INFO     | [job] job monitor thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:58,706 | INFO     | [job] control thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:58,713 | INFO     | [data] copytool_in thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:58,886 | INFO     | [data] control thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,015 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,163 | INFO     | [payload] failed_post thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,276 | INFO     | [payload] control thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,433 | INFO     | [job] validate thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,545 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,622 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,623 | INFO     | [data] copytool_out thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,689 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:30:59,753 | INFO     | [payload] validate_post thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:31:02,301 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 18:31:58] 2025-12-14 17:31:27,428 | INFO     | PID=463388 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 18:31:58] 2025-12-14 17:31:27,428 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 18:31:58] 2025-12-14 17:31:27,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 18:31:58] 2025-12-14 17:31:27,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 18:31:58] 2025-12-14 17:31:52,157 | INFO     | [monitor] cgroup control has ended
[2025-12-14 18:31:58] 2025-12-14 17:31:53,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558440085312)>', '<ExcThread(monitor, started 140557267482368)>']
[2025-12-14 18:31:58] 2025-12-14 17:31:53,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 18:31:58] 2025-12-14 17:31:53,567 | INFO     | [monitor] control thread has ended
[2025-12-14 18:31:58] 2025-12-14 17:31:58,189 | INFO     | all workflow threads have been joined
[2025-12-14 18:31:58] 2025-12-14 17:31:58,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 18:31:58] 2025-12-14 17:31:58,189 | INFO     | traces error code: 0
[2025-12-14 18:31:58] 2025-12-14 17:31:58,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 18:31:58] 2025-12-14 17:31:58,269 [wrapper] ==== pilot stdout END ====
[2025-12-14 18:31:58] 2025-12-14 17:31:58,273 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 18:31:58] 2025-12-14 17:31:58,277 [wrapper] pilotpid: 463388
[2025-12-14 18:31:58] 2025-12-14 17:31:58,281 [wrapper] Pilot exit status: 0
[2025-12-14 18:31:58] 2025-12-14 17:31:58,293 [wrapper] pandaids: 6929266443
[2025-12-14 18:31:58] 2025-12-14 17:31:58,316 [wrapper] cleanup supervisor_pilot  482872 463389
[2025-12-14 18:31:58] 2025-12-14 17:31:58,320 [wrapper] Test setup, not cleaning
[2025-12-14 18:31:58] 2025-12-14 17:31:58,324 [wrapper] apfmon messages muted
[2025-12-14 18:31:58] 2025-12-14 17:31:58,328 [wrapper] ==== wrapper stdout END ====
[2025-12-14 18:31:58] 2025-12-14 17:31:58,332 [wrapper] ==== wrapper stderr END ====
[2025-12-14 18:31:58]  *** Error codes and diagnostics ***
[2025-12-14 18:31:58]     "exeErrorCode": 0,
[2025-12-14 18:31:58]     "exeErrorDiag": "",
[2025-12-14 18:31:58]     "pilotErrorCode": 0,
[2025-12-14 18:31:58]     "pilotErrorDiag": "",
[2025-12-14 18:31:58]  *** Listing of results directory ***
[2025-12-14 18:31:58] total 440716
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc    579449 Dec 13 11:01 pilot3.tar.gz
[2025-12-14 18:31:58] -rwx------ 1 boinc boinc     36322 Dec 13 11:03 runpilot2-wrapper.sh
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc      5112 Dec 13 11:03 queuedata.json
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc       100 Dec 14 16:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 18:31:58] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 16:51 run_atlas
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc       105 Dec 14 16:51 job.xml
[2025-12-14 18:31:58] -rw-r--r-- 2 boinc boinc 223536706 Dec 14 16:51 EVNT.47898761._000134.pool.root.1
[2025-12-14 18:31:58] -rw-r--r-- 2 boinc boinc    592389 Dec 14 16:51 input.tar.gz
[2025-12-14 18:31:58] -rw-r--r-- 2 boinc boinc     15847 Dec 14 16:51 start_atlas.sh
[2025-12-14 18:31:58] drwxrwx--x 2 boinc boinc      4096 Dec 14 16:51 shared
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc         0 Dec 14 16:51 boinc_setup_complete
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc      6379 Dec 14 16:51 init_data.xml
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc         0 Dec 14 16:51 boinc_lockfile
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc      2502 Dec 14 16:51 pandaJob.out
[2025-12-14 18:31:58] -rw------- 1 boinc boinc    991032 Dec 14 16:51 agis_schedconf.cvmfs.json
[2025-12-14 18:31:58] -rw------- 1 boinc boinc   1516240 Dec 14 16:51 agis_ddmendpoints.agis.ALL.json
[2025-12-14 18:31:58] drwx------ 5 boinc boinc      4096 Dec 14 16:51 pilot3
[2025-12-14 18:31:58] -rw------- 1 boinc boinc 221587293 Dec 14 18:30 HITS.47898763._002701.pool.root.1
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc       530 Dec 14 18:30 boinc_task_state.xml
[2025-12-14 18:31:58] -rw------- 1 boinc boinc      1022 Dec 14 18:30 memory_monitor_summary.json
[2025-12-14 18:31:58] -rw------- 1 boinc boinc    270168 Dec 14 18:30 log.47898763._002701.job.log.tgz.1
[2025-12-14 18:31:58] -rw------- 1 boinc boinc      7764 Dec 14 18:30 heartbeat.json
[2025-12-14 18:31:58] -rw------- 1 boinc boinc        95 Dec 14 18:31 pilot_heartbeat.json
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc        27 Dec 14 18:31 wrapper_checkpoint.txt
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc      8192 Dec 14 18:31 boinc_mmap_file
[2025-12-14 18:31:58] -rw------- 1 boinc boinc      4937 Dec 14 18:31 pilotlog.txt
[2025-12-14 18:31:58] -rw------- 1 boinc boinc    862999 Dec 14 18:31 log.47898763._002701.job.log.1
[2025-12-14 18:31:58] -rw------- 1 boinc boinc       357 Dec 14 18:31 output.list
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc       620 Dec 14 18:31 runtime_log
[2025-12-14 18:31:58] -rw------- 1 boinc boinc   1157120 Dec 14 18:31 result.tar.gz
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc      8912 Dec 14 18:31 runtime_log.err
[2025-12-14 18:31:58] -rw------- 1 boinc boinc       662 Dec 14 18:31 fcWMDm9dbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBrSKDmRzjcrn.diag
[2025-12-14 18:31:58] -rw-r--r-- 1 boinc boinc      8188 Dec 14 18:31 stderr.txt
[2025-12-14 18:31:58] HITS file was successfully produced:
[2025-12-14 18:31:58] -rw------- 1 boinc boinc 221587293 Dec 14 18:30 shared/HITS.pool.root.1
[2025-12-14 18:31:58]  *** Contents of shared directory: ***
[2025-12-14 18:31:58] total 436432
[2025-12-14 18:31:58] -rw-r--r-- 2 boinc boinc 223536706 Dec 14 16:51 ATLAS.root_0
[2025-12-14 18:31:58] -rw-r--r-- 2 boinc boinc    592389 Dec 14 16:51 input.tar.gz
[2025-12-14 18:31:58] -rw-r--r-- 2 boinc boinc     15847 Dec 14 16:51 start_atlas.sh
[2025-12-14 18:31:58] -rw------- 1 boinc boinc 221587293 Dec 14 18:30 HITS.pool.root.1
[2025-12-14 18:31:58] -rw------- 1 boinc boinc   1157120 Dec 14 18:31 result.tar.gz
18:31:59 (459606): run_atlas exited; CPU time 22694.356271
18:31:59 (459606): called boinc_finish(0)

</stderr_txt>
]]>

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