Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:00:43 (12761): wrapper (7.7.26015): starting
13:00:43 (12761): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 13:00:43] Arguments: --nthreads 8
[2025-12-14 13:00:43] Threads: 8
[2025-12-14 13:00:43] Checking for CVMFS
[2025-12-14 13:00:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 13:00:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 13:00:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 13:00:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 13:00:46] 2.11.2.0 28366 198068 140516 153994 1 61 18073933 25165824 4418 130560 12 65221635 99.879 35676770 2160 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 13:00:46] CVMFS is ok
[2025-12-14 13:00:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 13:00:46] Checking for apptainer binary...
[2025-12-14 13:00:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 13:00:46] Running /usr/bin/apptainer --version
[2025-12-14 13:00:46] apptainer version 1.3.2-1.el7
[2025-12-14 13:00:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 13:01:08] cg-vwn288.simple-grid.lan
[2025-12-14 13:01:08] apptainer works
[2025-12-14 13:01:08] Set ATHENA_PROC_NUMBER=8
[2025-12-14 13:01:08] Set ATHENA_CORE_NUMBER=8
[2025-12-14 13:01:08] Starting ATLAS job with PandaID=6929310014
[2025-12-14 13:01:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 17:40:25]  *** The last 200 lines of the pilot log: ***
[2025-12-14 17:40:25] 2025-12-14 16:39:16,981 | INFO     | time since job start (16468s) is within the limit (174528.0s)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,395 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 17:40:25] 2025-12-14 16:39:17,396 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 17:40:25] 2025-12-14 16:39:17,398 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6929310014/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,399 | INFO     | extracted standard info from prmon json
[2025-12-14 17:40:25] 2025-12-14 16:39:17,399 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 17:40:25] 2025-12-14 16:39:17,399 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 17:40:25] 2025-12-14 16:39:17,399 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 17:40:25] 2025-12-14 16:39:17,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 17:40:25] 2025-12-14 16:39:17,412 | INFO     | fitting pss+swap vs Time
[2025-12-14 17:40:25] 2025-12-14 16:39:17,412 | INFO     | sum of square deviations: 5513070810.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,415 | INFO     | sum of deviations: 88284034494.00002
[2025-12-14 17:40:25] 2025-12-14 16:39:17,415 | INFO     | mean x: 1765722304.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,415 | INFO     | mean y: 2423491.8812260535
[2025-12-14 17:40:25] 2025-12-14 16:39:17,415 | INFO     | intersect: -28273122780.879448
[2025-12-14 17:40:25] 2025-12-14 16:39:17,416 | INFO     | chi2: 5.346188933527348
[2025-12-14 17:40:25] 2025-12-14 16:39:17,416 | INFO     | sum of square deviations: 5202255680.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,418 | INFO     | sum of deviations: 104158927034.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,419 | INFO     | mean x: 1765722151.5
[2025-12-14 17:40:25] 2025-12-14 16:39:17,419 | INFO     | mean y: 2431144.1875
[2025-12-14 17:40:25] 2025-12-14 16:39:17,419 | INFO     | intersect: -35350641840.569374
[2025-12-14 17:40:25] 2025-12-14 16:39:17,419 | INFO     | chi2: 4.5382115538584165
[2025-12-14 17:40:25] 2025-12-14 16:39:17,419 | INFO     | current chi2=4.5382115538584165 (change=15.113146761460186 %)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,420 | INFO     | right removable region: 255
[2025-12-14 17:40:25] 2025-12-14 16:39:17,420 | INFO     | sum of square deviations: 5202255680.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,422 | INFO     | sum of deviations: 3761160844.5
[2025-12-14 17:40:25] 2025-12-14 16:39:17,423 | INFO     | mean x: 1765722456.5
[2025-12-14 17:40:25] 2025-12-14 16:39:17,423 | INFO     | mean y: 2464900.50390625
[2025-12-14 17:40:25] 2025-12-14 16:39:17,423 | INFO     | intersect: -1274128672.3906415
[2025-12-14 17:40:25] 2025-12-14 16:39:17,423 | INFO     | chi2: 1.1969594181033067
[2025-12-14 17:40:25] 2025-12-14 16:39:17,424 | INFO     | current chi2=1.1969594181033067 (change=77.61097796980461 %)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,424 | INFO     | sum of square deviations: 4903347750.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,433 | INFO     | sum of deviations: -13624230562.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,434 | INFO     | mean x: 1765722609.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,434 | INFO     | mean y: 2473686.0079681273
[2025-12-14 17:40:25] 2025-12-14 16:39:17,434 | INFO     | intersect: 4908634366.443529
[2025-12-14 17:40:25] 2025-12-14 16:39:17,434 | INFO     | chi2: 0.8879941346572932
[2025-12-14 17:40:25] 2025-12-14 16:39:17,435 | INFO     | current chi2=0.8879941346572932 (change=25.812511165633147 %)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,435 | INFO     | sum of square deviations: 4616114457.5
[2025-12-14 17:40:25] 2025-12-14 16:39:17,437 | INFO     | sum of deviations: -17283879080.00001
[2025-12-14 17:40:25] 2025-12-14 16:39:17,437 | INFO     | mean x: 1765722761.5
[2025-12-14 17:40:25] 2025-12-14 16:39:17,437 | INFO     | mean y: 2475605.9674796746
[2025-12-14 17:40:25] 2025-12-14 16:39:17,438 | INFO     | intersect: 6613780195.476718
[2025-12-14 17:40:25] 2025-12-14 16:39:17,438 | INFO     | chi2: 0.8649697294569335
[2025-12-14 17:40:25] 2025-12-14 16:39:17,438 | INFO     | current chi2=0.8649697294569335 (change=2.5928555495747205 %)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,438 | INFO     | left removable region: 30
[2025-12-14 17:40:25] 2025-12-14 16:39:17,439 | INFO     | sum of square deviations: 3531973200.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,440 | INFO     | sum of deviations: -770695166.9999999
[2025-12-14 17:40:25] 2025-12-14 16:39:17,441 | INFO     | mean x: 1765723036.0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,441 | INFO     | mean y: 2484993.702222222
[2025-12-14 17:40:25] 2025-12-14 16:39:17,441 | INFO     | intersect: 387775066.14834577
[2025-12-14 17:40:25] 2025-12-14 16:39:17,441 | INFO     | chi2: 0.0025853164370917697
[2025-12-14 17:40:25] 2025-12-14 16:39:17,441 | INFO     | current memory leak: -0.22 B/s (using 225 data points, chi2=0.00)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,442 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,442 | INFO     | ..............................
[2025-12-14 17:40:25] 2025-12-14 16:39:17,442 | INFO     | . Timing measurements:
[2025-12-14 17:40:25] 2025-12-14 16:39:17,442 | INFO     | . get job = 0 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,442 | INFO     | . initial setup = 9 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,442 | INFO     | . payload setup = 121 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,443 | INFO     | . stage-in = 0 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,443 | INFO     | . payload execution = 16048 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,443 | INFO     | . stage-out = 3 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,443 | INFO     | . log creation = 1 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,443 | INFO     | ..............................
[2025-12-14 17:40:25] 2025-12-14 16:39:17,570 | INFO     | 
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | job summary report
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | --------------------------------------------------
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | PanDA job id: 6929310014
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | task id: 47886831
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | errors: (none)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | pilot state: finished 
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | transexitcode: 0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,571 | INFO     | exeerrorcode: 0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | exeerrordiag: 
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | exitcode: 0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | exitmsg: OK
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | cpuconsumptiontime: 60676 s
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | nevents: 400
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | neventsw: 0
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | pid: 23078
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | pgrp: 23078
[2025-12-14 17:40:25] 2025-12-14 16:39:17,572 | INFO     | corecount: 8
[2025-12-14 17:40:25] 2025-12-14 16:39:17,573 | INFO     | event service: False
[2025-12-14 17:40:25] 2025-12-14 16:39:17,573 | INFO     | sizes: {0: 2283763, 1: 2284018, 12: 2284018, 23: 2284046, 34: 2284074, 44: 2284102, 55: 2284258, 66: 2284286, 76: 2284314, 87: 2284370, 98: 2284398, 100: 2284968, 
[2025-12-14 17:40:25] 2025-12-14 16:39:17,573 | INFO     | --------------------------------------------------
[2025-12-14 17:40:25] 2025-12-14 16:39:17,573 | INFO     | 
[2025-12-14 17:40:25] 2025-12-14 16:39:17,573 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-12-14 17:40:25] 2025-12-14 16:39:17,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,921 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 17:40:25] 2025-12-14 16:39:17,922 | INFO     | job 6929310014 has completed (purged errors)
[2025-12-14 17:40:25] 2025-12-14 16:39:17,922 | INFO     | overall cleanup function is called
[2025-12-14 17:40:25] 2025-12-14 16:39:18,930 | INFO     | --- collectZombieJob: --- 10, [23078]
[2025-12-14 17:40:25] 2025-12-14 16:39:18,931 | INFO     | zombie collector waiting for pid 23078
[2025-12-14 17:40:25] 2025-12-14 16:39:18,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 17:40:25] 2025-12-14 16:39:18,931 | INFO     | collected zombie processes
[2025-12-14 17:40:25] 2025-12-14 16:39:18,931 | INFO     | will attempt to kill all subprocesses of pid=23078
[2025-12-14 17:40:25] 2025-12-14 16:39:19,033 | INFO     | process IDs to be killed: [23078] (in reverse order)
[2025-12-14 17:40:25] 2025-12-14 16:39:19,317 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 17:40:25] 2025-12-14 16:39:19,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 17:40:25] 2025-12-14 16:39:19,321 | INFO     | did not find any defunct processes belonging to 23078
[2025-12-14 17:40:25] 2025-12-14 16:39:19,327 | INFO     | did not find any defunct processes belonging to 23078
[2025-12-14 17:40:25] 2025-12-14 16:39:19,327 | INFO     | ready for new job
[2025-12-14 17:40:25] 2025-12-14 16:39:19,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 17:40:25] 2025-12-14 16:39:19,329 | INFO     | ***************************************
[2025-12-14 17:40:25] 2025-12-14 16:39:19,332 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 17:40:25] 2025-12-14 16:39:19,333 | INFO     | ***************************************
[2025-12-14 17:40:25] 2025-12-14 16:39:19,333 | INFO     | 
[2025-12-14 17:40:25] 2025-12-14 16:39:19,333 | INFO     | pilot is running in a VM
[2025-12-14 17:40:25] 2025-12-14 16:39:19,334 | INFO     | architecture information:
[2025-12-14 17:40:25] 2025-12-14 16:39:19,340 | INFO     | executing command: cat /etc/os-release
[2025-12-14 17:40:25] 2025-12-14 16:39:19,489 | INFO     | cat /etc/os-release:
[2025-12-14 17:40:25] NAME="CentOS Linux"
[2025-12-14 17:40:25] VERSION="7 (Core)"
[2025-12-14 17:40:25] ID="centos"
[2025-12-14 17:40:25] ID_LIKE="rhel fedora"
[2025-12-14 17:40:25] VERSION_ID="7"
[2025-12-14 17:40:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 17:40:25] ANSI_COLOR="0;31"
[2025-12-14 17:40:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 17:40:25] HOME_URL="https://www.centos.org/"
[2025-12-14 17:40:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 17:40:25] 
[2025-12-14 17:40:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 17:40:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 17:40:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 17:40:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 17:40:25] 
[2025-12-14 17:40:25] 2025-12-14 16:39:19,489 | INFO     | ***************************************
[2025-12-14 17:40:25] 2025-12-14 16:39:19,992 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-12-14 17:40:25] 2025-12-14 16:39:20,107 | INFO     | sufficient remaining disk space (496877174784 B)
[2025-12-14 17:40:25] 2025-12-14 16:39:20,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 17:40:25] 2025-12-14 16:39:20,108 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 17:40:25] 2025-12-14 16:39:20,108 | INFO     | update_server=False
[2025-12-14 17:40:25] 2025-12-14 16:39:20,108 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 17:40:25] 2025-12-14 16:39:20,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 17:40:25] 2025-12-14 16:39:20,109 | INFO     | aborting loop
[2025-12-14 17:40:25] 2025-12-14 16:39:20,682 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 17:40:25] 2025-12-14 16:39:20,691 | INFO     | all payload control threads have been joined
[2025-12-14 17:40:25] 2025-12-14 16:39:20,714 | INFO     | all data control threads have been joined
[2025-12-14 17:40:25] 2025-12-14 16:39:21,055 | INFO     | all job control threads have been joined
[2025-12-14 17:40:25] 2025-12-14 16:39:21,114 | INFO     | [job] retrieve thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,115 | INFO     | [job] job monitor thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,131 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,204 | INFO     | [job] validate thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,345 | INFO     | [payload] validate_post thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,361 | INFO     | [payload] failed_post thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,420 | INFO     | [data] copytool_in thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,698 | INFO     | [payload] control thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,721 | INFO     | [data] control thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:21,871 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:22,062 | INFO     | [job] control thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:22,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 17:40:25] 2025-12-14 16:39:22,217 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:22,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:22,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 17:40:25] 2025-12-14 16:39:22,690 | INFO     | [data] copytool_out thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:23,594 | INFO     | [job] queue monitor thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:26,116 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 17:40:25] 2025-12-14 16:39:50,153 | INFO     | PID=16545 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 17:40:25] 2025-12-14 16:39:50,153 | INFO     | .. there are 9 such processes running
[2025-12-14 17:40:25] 2025-12-14 16:39:50,153 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 17:40:25] 2025-12-14 16:39:50,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 17:40:25] 2025-12-14 16:39:50,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 17:40:25] 2025-12-14 16:40:16,186 | INFO     | [monitor] cgroup control has ended
[2025-12-14 17:40:25] 2025-12-14 16:40:17,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140654583605056)>', '<ExcThread(monitor, started 140653996533504)>']
[2025-12-14 17:40:25] 2025-12-14 16:40:18,318 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 17:40:25] 2025-12-14 16:40:18,319 | INFO     | [monitor] control thread has ended
[2025-12-14 17:40:25] 2025-12-14 16:40:22,420 | INFO     | all workflow threads have been joined
[2025-12-14 17:40:25] 2025-12-14 16:40:22,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 17:40:25] 2025-12-14 16:40:22,421 | INFO     | traces error code: 0
[2025-12-14 17:40:25] 2025-12-14 16:40:22,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 17:40:25] 2025-12-14 16:40:22,763 [wrapper] ==== pilot stdout END ====
[2025-12-14 17:40:25] 2025-12-14 16:40:22,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 17:40:25] 2025-12-14 16:40:22,921 [wrapper] pilotpid: 16545
[2025-12-14 17:40:25] 2025-12-14 16:40:23,008 [wrapper] Pilot exit status: 0
[2025-12-14 17:40:25] 2025-12-14 16:40:23,366 [wrapper] pandaids: 6929310014
[2025-12-14 17:40:25] 2025-12-14 16:40:24,387 [wrapper] cleanup supervisor_pilot 20662 16546
[2025-12-14 17:40:25] 2025-12-14 16:40:24,396 [wrapper] Test setup, not cleaning
[2025-12-14 17:40:25] 2025-12-14 16:40:24,410 [wrapper] apfmon messages muted
[2025-12-14 17:40:25] 2025-12-14 16:40:24,430 [wrapper] ==== wrapper stdout END ====
[2025-12-14 17:40:25] 2025-12-14 16:40:24,443 [wrapper] ==== wrapper stderr END ====
[2025-12-14 17:40:25]  *** Error codes and diagnostics ***
[2025-12-14 17:40:25]     "exeErrorCode": 0,
[2025-12-14 17:40:25]     "exeErrorDiag": "",
[2025-12-14 17:40:25]     "pilotErrorCode": 0,
[2025-12-14 17:40:25]     "pilotErrorDiag": "",
[2025-12-14 17:40:25]  *** Listing of results directory ***
[2025-12-14 17:40:25] total 342324
[2025-12-14 17:40:25] -rwx------. 1 boinc boinc     36322 Dec 13 14:47 runpilot2-wrapper.sh
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc    579449 Dec 13 14:50 pilot3.tar.gz
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc      5112 Dec 13 14:52 queuedata.json
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc       100 Dec 14 13:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 17:40:25] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 13:00 run_atlas
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc       105 Dec 14 13:00 job.xml
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc      6392 Dec 14 13:00 init_data.xml
[2025-12-14 17:40:25] -rw-r--r--. 2 boinc boinc 192855592 Dec 14 13:00 EVNT.47886829._000192.pool.root.1
[2025-12-14 17:40:25] -rw-r--r--. 2 boinc boinc     15847 Dec 14 13:00 start_atlas.sh
[2025-12-14 17:40:25] drwxrwx--x. 2 boinc boinc        68 Dec 14 13:00 shared
[2025-12-14 17:40:25] -rw-r--r--. 2 boinc boinc    592419 Dec 14 13:00 input.tar.gz
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc         0 Dec 14 13:00 boinc_lockfile
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc      2538 Dec 14 13:01 pandaJob.out
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc    991728 Dec 14 13:04 agis_schedconf.cvmfs.json
[2025-12-14 17:40:25] drwx------. 5 boinc boinc      4096 Dec 14 13:04 pilot3
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc 148452163 Dec 14 17:36 HITS.47886831._004787.pool.root.1
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc       531 Dec 14 17:36 boinc_task_state.xml
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc      1012 Dec 14 17:37 memory_monitor_summary.json
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc   1516240 Dec 14 17:37 agis_ddmendpoints.agis.ALL.json
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc    472776 Dec 14 17:37 log.47886831._004787.job.log.tgz.1
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc        95 Dec 14 17:39 pilot_heartbeat.json
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc      7769 Dec 14 17:39 heartbeat.json
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc      8192 Dec 14 17:40 boinc_mmap_file
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc        28 Dec 14 17:40 wrapper_checkpoint.txt
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc      4884 Dec 14 17:40 pilotlog.txt
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc   2192401 Dec 14 17:40 log.47886831._004787.job.log.1
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc       357 Dec 14 17:40 output.list
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc       620 Dec 14 17:40 runtime_log
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc   2682880 Dec 14 17:40 result.tar.gz
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc      8817 Dec 14 17:40 runtime_log.err
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc       657 Dec 14 17:40 EY1MDmc9eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfnTKDmeMLMJo.diag
[2025-12-14 17:40:25] -rw-r--r--. 1 boinc boinc     20773 Dec 14 17:40 stderr.txt
[2025-12-14 17:40:25] HITS file was successfully produced:
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc 148452163 Dec 14 17:36 shared/HITS.pool.root.1
[2025-12-14 17:40:25]  *** Contents of shared directory: ***
[2025-12-14 17:40:25] total 336528
[2025-12-14 17:40:25] -rw-r--r--. 2 boinc boinc 192855592 Dec 14 13:00 ATLAS.root_0
[2025-12-14 17:40:25] -rw-r--r--. 2 boinc boinc     15847 Dec 14 13:00 start_atlas.sh
[2025-12-14 17:40:25] -rw-r--r--. 2 boinc boinc    592419 Dec 14 13:00 input.tar.gz
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc 148452163 Dec 14 17:36 HITS.pool.root.1
[2025-12-14 17:40:25] -rw-------. 1 boinc boinc   2682880 Dec 14 17:40 result.tar.gz
17:40:26 (12761): run_atlas exited; CPU time 60907.064199
17:40:26 (12761): called boinc_finish(0)

</stderr_txt>
]]>

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