Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:54 (10348): wrapper (7.7.26015): starting
00:13:54 (10348): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 00:13:54] Arguments: --nthreads 12
[2025-12-14 00:13:54] Threads: 12
[2025-12-14 00:13:54] Checking for CVMFS
[2025-12-14 00:13:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 00:13:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 00:13:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 00:13:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 00:13:54] 2.11.2.0 2991 313121 94108 153984 3 57 16778928 20275201 1 130560 1 138266804 99.959 19088300 15411 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 00:13:54] CVMFS is ok
[2025-12-14 00:13:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:13:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:13:54] Further information can be found at the LHC@home message board.
[2025-12-14 00:13:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:13:54] Checking for apptainer binary...
[2025-12-14 00:13:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 00:13:54] Running /usr/bin/apptainer --version
[2025-12-14 00:13:54] apptainer version 1.3.2-1.el7
[2025-12-14 00:13:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:13:56] c-205-32.aglt2.org
[2025-12-14 00:13:56] apptainer works
[2025-12-14 00:13:56] Set ATHENA_PROC_NUMBER=12
[2025-12-14 00:13:56] Set ATHENA_CORE_NUMBER=12
[2025-12-14 00:13:56] Starting ATLAS job with PandaID=6929399411
[2025-12-14 00:13:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 01:24:22]  *** The last 200 lines of the pilot log: ***
[2025-12-14 01:24:22]  replicas=None
[2025-12-14 01:24:22]  scope=mc23_13p6TeV
[2025-12-14 01:24:22]  status=None
[2025-12-14 01:24:22]  status_code=0
[2025-12-14 01:24:22]  storage_token=
[2025-12-14 01:24:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929399411/log.47899042._000294.job.log.tgz.1
[2025-12-14 01:24:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/5e/log.47899042._000294.job.log.tgz.1
[2025-12-14 01:24:22]  workdir=None
[2025-12-14 01:24:22] ]
[2025-12-14 01:24:22] 2025-12-14 06:23:19,205 | INFO     | transferring file log.47899042._000294.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929399411/log.47899042._000294.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 01:24:22] 2025-12-14 06:23:19,205 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929399411/log.47899042._000294.job.log.tgz.1 /tmp/boinchome/slots/0/log.47899042._000294.job
[2025-12-14 01:24:22] 2025-12-14 06:23:19,227 | INFO     | adding to output.list: log.47899042._000294.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/5e/log.47899042._000294.job.log.tg
[2025-12-14 01:24:22] 2025-12-14 06:23:19,228 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 01:24:22] 2025-12-14 06:23:19,228 | INFO     | summary of transferred files:
[2025-12-14 01:24:22] 2025-12-14 06:23:19,229 | INFO     |  -- lfn=log.47899042._000294.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 01:24:22] 2025-12-14 06:23:19,229 | INFO     | stage-out finished correctly
[2025-12-14 01:24:22] 2025-12-14 06:23:19,456 | INFO     | PID=14076 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 01:24:22] 2025-12-14 06:23:20,456 | INFO     | time since job start (4150s) is within the limit (174528.0s)
[2025-12-14 01:24:22] 2025-12-14 06:23:21,920 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 01:24:22] 2025-12-14 06:23:22,461 | INFO     | time since job start (4152s) is within the limit (174528.0s)
[2025-12-14 01:24:22] 2025-12-14 06:23:24,249 | WARNING  | process 20450 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 01:24:22] 2025-12-14 06:23:24,250 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929399411/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 01:24:22] 2025-12-14 06:23:24,335 | INFO     | number of running child processes to parent process 20450: 1
[2025-12-14 01:24:22] 2025-12-14 06:23:24,335 | INFO     | maximum number of monitored processes: 6
[2025-12-14 01:24:22] 2025-12-14 06:23:24,462 | INFO     | time since job start (4154s) is within the limit (174528.0s)
[2025-12-14 01:24:22] 2025-12-14 06:23:24,467 | INFO     | job 6929399411 has state=finished
[2025-12-14 01:24:22] 2025-12-14 06:23:24,468 | INFO     | preparing for final server update for job 6929399411 in state='finished'
[2025-12-14 01:24:22] 2025-12-14 06:23:24,468 | INFO     | this job has now completed (state=finished)
[2025-12-14 01:24:22] 2025-12-14 06:23:24,468 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 01:24:22] 2025-12-14 06:23:24,469 | INFO     | log transfer has been attempted: DONE
[2025-12-14 01:24:22] 2025-12-14 06:23:24,469 | INFO     | job 6929399411 has finished - writing final server update
[2025-12-14 01:24:22] 2025-12-14 06:23:24,469 | INFO     | total number of processed events: 400 (read)
[2025-12-14 01:24:22] 2025-12-14 06:23:24,470 | INFO     | executing command: lscpu
[2025-12-14 01:24:22] 2025-12-14 06:23:24,497 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 01:24:22] 2025-12-14 06:23:26,467 | INFO     | time since job start (4156s) is within the limit (174528.0s)
[2025-12-14 01:24:22] 2025-12-14 06:23:26,838 | INFO     | monitor loop #309: job 0:6929399411 is in state 'finished'
[2025-12-14 01:24:22] 2025-12-14 06:23:26,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 01:24:22] 2025-12-14 06:23:28,473 | INFO     | time since job start (4158s) is within the limit (174528.0s)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,073 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 01:24:22] 2025-12-14 06:23:29,077 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-14 01:24:22] 2025-12-14 06:23:29,079 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929399411/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,080 | INFO     | extracted standard info from prmon json
[2025-12-14 01:24:22] 2025-12-14 06:23:29,080 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 01:24:22] 2025-12-14 06:23:29,080 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 01:24:22] 2025-12-14 06:23:29,081 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 01:24:22] 2025-12-14 06:23:29,081 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 01:24:22] 2025-12-14 06:23:29,083 | INFO     | fitting pss+swap vs Time
[2025-12-14 01:24:22] 2025-12-14 06:23:29,083 | INFO     | sum of square deviations: 70364110.0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,083 | INFO     | sum of deviations: -69223654.00000025
[2025-12-14 01:24:22] 2025-12-14 06:23:29,083 | INFO     | mean x: 1765691413.0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,083 | INFO     | mean y: 2745066.5573770492
[2025-12-14 01:24:22] 2025-12-14 06:23:29,084 | INFO     | intersect: 1739818291.022002
[2025-12-14 01:24:22] 2025-12-14 06:23:29,084 | INFO     | chi2: 0.007288859606000842
[2025-12-14 01:24:22] 2025-12-14 06:23:29,084 | INFO     | current memory leak: -0.98 B/s (using 61 data points, chi2=0.01)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,084 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | ..............................
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . Timing measurements:
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . get job = 0 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . initial setup = 2 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . payload setup = 6 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . stage-in = 0 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . payload execution = 4122 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,085 | INFO     | . stage-out = 0 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,086 | INFO     | . log creation = 0 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,086 | INFO     | ..............................
[2025-12-14 01:24:22] 2025-12-14 06:23:29,589 | INFO     | 
[2025-12-14 01:24:22] 2025-12-14 06:23:29,589 | INFO     | job summary report
[2025-12-14 01:24:22] 2025-12-14 06:23:29,590 | INFO     | --------------------------------------------------
[2025-12-14 01:24:22] 2025-12-14 06:23:29,590 | INFO     | PanDA job id: 6929399411
[2025-12-14 01:24:22] 2025-12-14 06:23:29,590 | INFO     | task id: 47899042
[2025-12-14 01:24:22] 2025-12-14 06:23:29,590 | INFO     | errors: (none)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 01:24:22] 2025-12-14 06:23:29,590 | INFO     | pilot state: finished 
[2025-12-14 01:24:22] 2025-12-14 06:23:29,591 | INFO     | transexitcode: 0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,591 | INFO     | exeerrorcode: 0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,591 | INFO     | exeerrordiag: 
[2025-12-14 01:24:22] 2025-12-14 06:23:29,591 | INFO     | exitcode: 0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,591 | INFO     | exitmsg: OK
[2025-12-14 01:24:22] 2025-12-14 06:23:29,591 | INFO     | cpuconsumptiontime: 45755 s
[2025-12-14 01:24:22] 2025-12-14 06:23:29,592 | INFO     | nevents: 400
[2025-12-14 01:24:22] 2025-12-14 06:23:29,592 | INFO     | neventsw: 0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,592 | INFO     | pid: 20450
[2025-12-14 01:24:22] 2025-12-14 06:23:29,592 | INFO     | pgrp: 20450
[2025-12-14 01:24:22] 2025-12-14 06:23:29,592 | INFO     | corecount: 12
[2025-12-14 01:24:22] 2025-12-14 06:23:29,592 | INFO     | event service: False
[2025-12-14 01:24:22] 2025-12-14 06:23:29,593 | INFO     | sizes: {0: 2283940, 5: 2284202, 11: 2284258, 4132: 2310111, 4133: 2319164, 4136: 2319164, 4143: 2319486}
[2025-12-14 01:24:22] 2025-12-14 06:23:29,593 | INFO     | --------------------------------------------------
[2025-12-14 01:24:22] 2025-12-14 06:23:29,593 | INFO     | 
[2025-12-14 01:24:22] 2025-12-14 06:23:29,593 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 01:24:22] 2025-12-14 06:23:29,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 01:24:22] 2025-12-14 06:23:29,622 | INFO     | job 6929399411 has completed (purged errors)
[2025-12-14 01:24:22] 2025-12-14 06:23:29,622 | INFO     | overall cleanup function is called
[2025-12-14 01:24:22] 2025-12-14 06:23:30,630 | INFO     | --- collectZombieJob: --- 10, [20450]
[2025-12-14 01:24:22] 2025-12-14 06:23:30,631 | INFO     | zombie collector waiting for pid 20450
[2025-12-14 01:24:22] 2025-12-14 06:23:30,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 01:24:22] 2025-12-14 06:23:30,631 | INFO     | collected zombie processes
[2025-12-14 01:24:22] 2025-12-14 06:23:30,631 | INFO     | will attempt to kill all subprocesses of pid=20450
[2025-12-14 01:24:22] 2025-12-14 06:23:30,721 | INFO     | process IDs to be killed: [20450] (in reverse order)
[2025-12-14 01:24:22] 2025-12-14 06:23:30,773 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 01:24:22] 2025-12-14 06:23:30,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 01:24:22] 2025-12-14 06:23:30,776 | INFO     | did not find any defunct processes belonging to 20450
[2025-12-14 01:24:22] 2025-12-14 06:23:30,779 | INFO     | did not find any defunct processes belonging to 20450
[2025-12-14 01:24:22] 2025-12-14 06:23:30,779 | INFO     | ready for new job
[2025-12-14 01:24:22] 2025-12-14 06:23:30,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 01:24:22] 2025-12-14 06:23:30,780 | INFO     | ***************************************
[2025-12-14 01:24:22] 2025-12-14 06:23:30,780 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 01:24:22] 2025-12-14 06:23:30,780 | INFO     | ***************************************
[2025-12-14 01:24:22] 2025-12-14 06:23:30,780 | INFO     | 
[2025-12-14 01:24:22] 2025-12-14 06:23:30,781 | INFO     | architecture information:
[2025-12-14 01:24:22] 2025-12-14 06:23:30,781 | INFO     | executing command: cat /etc/os-release
[2025-12-14 01:24:22] 2025-12-14 06:23:30,796 | INFO     | cat /etc/os-release:
[2025-12-14 01:24:22] NAME="CentOS Linux"
[2025-12-14 01:24:22] VERSION="7 (Core)"
[2025-12-14 01:24:22] ID="centos"
[2025-12-14 01:24:22] ID_LIKE="rhel fedora"
[2025-12-14 01:24:22] VERSION_ID="7"
[2025-12-14 01:24:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 01:24:22] ANSI_COLOR="0;31"
[2025-12-14 01:24:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 01:24:22] HOME_URL="https://www.centos.org/"
[2025-12-14 01:24:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 01:24:22] 
[2025-12-14 01:24:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 01:24:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 01:24:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 01:24:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 01:24:22] 
[2025-12-14 01:24:22] 2025-12-14 06:23:30,797 | INFO     | ***************************************
[2025-12-14 01:24:22] 2025-12-14 06:23:31,299 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 01:24:22] 2025-12-14 06:23:31,317 | INFO     | sufficient remaining disk space (29410459648 B)
[2025-12-14 01:24:22] 2025-12-14 06:23:31,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 01:24:22] 2025-12-14 06:23:31,317 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 01:24:22] 2025-12-14 06:23:31,317 | INFO     | update_server=False
[2025-12-14 01:24:22] 2025-12-14 06:23:31,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 01:24:22] 2025-12-14 06:23:31,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:24:22] 2025-12-14 06:23:31,318 | INFO     | aborting loop
[2025-12-14 01:24:22] 2025-12-14 06:23:31,758 | INFO     | all payload control threads have been joined
[2025-12-14 01:24:22] 2025-12-14 06:23:31,966 | INFO     | all data control threads have been joined
[2025-12-14 01:24:22] 2025-12-14 06:23:32,070 | INFO     | all job control threads have been joined
[2025-12-14 01:24:22] 2025-12-14 06:23:32,323 | INFO     | [job] retrieve thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,323 | INFO     | [job] job monitor thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 01:24:22] 2025-12-14 06:23:32,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 01:24:22] 2025-12-14 06:23:32,628 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,647 | INFO     | [data] copytool_in thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,763 | INFO     | [payload] control thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,802 | INFO     | [payload] failed_post thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,932 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:32,971 | INFO     | [data] control thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:33,080 | INFO     | [job] control thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:33,633 | INFO     | [job] validate thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:33,638 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:33,912 | INFO     | [payload] validate_post thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:34,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:24:22] 2025-12-14 06:23:34,331 | INFO     | [data] copytool_out thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:35,178 | INFO     | [job] queue monitor thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:36,513 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:23:42,166 | INFO     | job.realtimelogging is not enabled
[2025-12-14 01:24:22] 2025-12-14 06:23:43,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 01:24:22] 2025-12-14 06:24:01,675 | INFO     | PID=14076 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 01:24:22] 2025-12-14 06:24:01,675 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 01:24:22] 2025-12-14 06:24:01,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 01:24:22] 2025-12-14 06:24:01,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 01:24:22] 2025-12-14 06:24:16,592 | INFO     | [monitor] cgroup control has ended
[2025-12-14 01:24:22] 2025-12-14 06:24:17,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140028655937344)>', '<ExcThread(monitor, started 140028072158976)>']
[2025-12-14 01:24:22] 2025-12-14 06:24:17,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 01:24:22] 2025-12-14 06:24:17,757 | INFO     | [monitor] control thread has ended
[2025-12-14 01:24:22] 2025-12-14 06:24:22,048 | INFO     | all workflow threads have been joined
[2025-12-14 01:24:22] 2025-12-14 06:24:22,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 01:24:22] 2025-12-14 06:24:22,055 | INFO     | traces error code: 0
[2025-12-14 01:24:22] 2025-12-14 06:24:22,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 01:24:22] 2025-12-14 06:24:22,157 [wrapper] ==== pilot stdout END ====
[2025-12-14 01:24:22] 2025-12-14 06:24:22,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 01:24:22] 2025-12-14 06:24:22,164 [wrapper] pilotpid: 14076
[2025-12-14 01:24:22] 2025-12-14 06:24:22,167 [wrapper] Pilot exit status: 0
[2025-12-14 01:24:22] 2025-12-14 06:24:22,181 [wrapper] pandaids: 6929399411
[2025-12-14 01:24:22] 2025-12-14 06:24:22,225 [wrapper] cleanup supervisor_pilot 10909 14077
[2025-12-14 01:24:22] 2025-12-14 06:24:22,228 [wrapper] Test setup, not cleaning
[2025-12-14 01:24:22] 2025-12-14 06:24:22,232 [wrapper] apfmon messages muted
[2025-12-14 01:24:22] 2025-12-14 06:24:22,235 [wrapper] ==== wrapper stdout END ====
[2025-12-14 01:24:22] 2025-12-14 06:24:22,239 [wrapper] ==== wrapper stderr END ====
[2025-12-14 01:24:22]  *** Error codes and diagnostics ***
[2025-12-14 01:24:22]     "exeErrorCode": 0,
[2025-12-14 01:24:22]     "exeErrorDiag": "",
[2025-12-14 01:24:22]     "pilotErrorCode": 0,
[2025-12-14 01:24:22]     "pilotErrorDiag": "",
[2025-12-14 01:24:22]  *** Listing of results directory ***
[2025-12-14 01:24:22] total 379072
[2025-12-14 01:24:22] -rwx------ 1 boincer umatlas     36322 Dec 13 08:47 runpilot2-wrapper.sh
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:50 pilot3.tar.gz
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:51 queuedata.json
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas       100 Dec 14 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 01:24:22] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 00:13 run_atlas
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas       105 Dec 14 00:13 job.xml
[2025-12-14 01:24:22] -rw-r--r-- 2 boincer umatlas 195099998 Dec 14 00:13 EVNT.47899040._000012.pool.root.1
[2025-12-14 01:24:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 00:13 start_atlas.sh
[2025-12-14 01:24:22] drwxrwx--x 2 boincer umatlas      4096 Dec 14 00:13 shared
[2025-12-14 01:24:22] -rw-r--r-- 2 boincer umatlas    592385 Dec 14 00:13 input.tar.gz
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas         0 Dec 14 00:13 boinc_lockfile
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas      2499 Dec 14 00:13 pandaJob.out
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas        57 Dec 14 00:13 setup.sh.local
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas    991728 Dec 14 00:14 agis_schedconf.cvmfs.json
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas   1516240 Dec 14 00:14 agis_ddmendpoints.agis.ALL.json
[2025-12-14 01:24:22] drwx------ 5 boincer umatlas      4096 Dec 14 00:14 pilot3
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas 187157780 Dec 14 01:22 HITS.47899042._000294.pool.root.1
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 01:23 init_data.xml
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas       529 Dec 14 01:23 boinc_task_state.xml
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas        95 Dec 14 01:23 pilot_heartbeat.json
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas      1044 Dec 14 01:23 memory_monitor_summary.json
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas    385781 Dec 14 01:23 log.47899042._000294.job.log.tgz.1
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas      7838 Dec 14 01:23 heartbeat.json
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas        27 Dec 14 01:24 wrapper_checkpoint.txt
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 01:24 boinc_mmap_file
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas      4818 Dec 14 01:24 pilotlog.txt
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas    606965 Dec 14 01:24 log.47899042._000294.job.log.1
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas       357 Dec 14 01:24 output.list
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas       620 Dec 14 01:24 runtime_log
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas   1013760 Dec 14 01:24 result.tar.gz
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas      9344 Dec 14 01:24 runtime_log.err
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas       659 Dec 14 01:24 iiCODmR9eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmilTKDmvpbI4n.diag
[2025-12-14 01:24:22] -rw-r--r-- 1 boincer umatlas     21982 Dec 14 01:24 stderr.txt
[2025-12-14 01:24:22] HITS file was successfully produced:
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas 187157780 Dec 14 01:22 shared/HITS.pool.root.1
[2025-12-14 01:24:22]  *** Contents of shared directory: ***
[2025-12-14 01:24:22] total 374896
[2025-12-14 01:24:22] -rw-r--r-- 2 boincer umatlas 195099998 Dec 14 00:13 ATLAS.root_0
[2025-12-14 01:24:22] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 00:13 start_atlas.sh
[2025-12-14 01:24:22] -rw-r--r-- 2 boincer umatlas    592385 Dec 14 00:13 input.tar.gz
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas 187157780 Dec 14 01:22 HITS.pool.root.1
[2025-12-14 01:24:22] -rw------- 1 boincer umatlas   1013760 Dec 14 01:24 result.tar.gz
01:24:23 (10348): run_atlas exited; CPU time 45741.679404
01:24:23 (10348): called boinc_finish(0)

</stderr_txt>
]]>

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