Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:08:11 (3640074): wrapper (7.7.26015): starting
21:08:11 (3640074): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 21:08:11] Arguments: --nthreads 8
[2025-12-13 21:08:11] Threads: 8
[2025-12-13 21:08:11] Checking for CVMFS
[2025-12-13 21:08:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 21:08:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 21:08:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 21:08:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 21:08:12] 2.11.3.0 1904511 18804 256420 153984 0 130 40793227 45568000 13201 130560 0 71617075 99.704 57379568 21312 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-13 21:08:12] CVMFS is ok
[2025-12-13 21:08:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 21:08:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 21:08:12] Further information can be found at the LHC@home message board.
[2025-12-13 21:08:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 21:08:12] Checking for apptainer binary...
[2025-12-13 21:08:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 21:08:12] Running /usr/bin/apptainer --version
[2025-12-13 21:08:12] apptainer version 1.4.1-1.el9
[2025-12-13 21:08:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 21:08:13] wns0020.triumf.lcg
[2025-12-13 21:08:13] apptainer works
[2025-12-13 21:08:13] Set ATHENA_PROC_NUMBER=8
[2025-12-13 21:08:13] Set ATHENA_CORE_NUMBER=8
[2025-12-13 21:08:13] Starting ATLAS job with PandaID=6929363796
[2025-12-13 21:08:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 21:13:01]  *** The last 200 lines of the pilot log: ***
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | WARNING  | wrong length of table data, x=[1765688977.0], y=[25241.0] (must be same and length>=4)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | ..............................
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | . Timing measurements:
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . get job = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . initial setup = 8 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . payload setup = 10 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . stage-in = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . payload execution = 40 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . stage-out = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . log creation = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | ..............................
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929363796/pilotlog.txt
[2025-12-13 21:13:01] 2025-12-14 05:12:27,507 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-13 21:13:01] - Log from pilotlog.txt -
[2025-12-13 21:13:01] 2025-12-14 05:12:27,488 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929363796/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | INFO     | extracted standard info from prmon json
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | WARNING  | wrong length of table data, x=[1765688977.0], y=[25241.0] (must be same and length>=4)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | ..............................
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | . Timing measurements:
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . get job = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . initial setup = 8 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . payload setup = 10 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . stage-in = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . payload execution = 40 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . stage-out = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . log creation = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | ..............................
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929363796/pilotlog.txt
[2025-12-13 21:13:01] 2025-12-14 05:12:27,507 | WARNING  | 
[2025-12-13 21:13:01] [begin log extracts]
[2025-12-13 21:13:01] - Log from pilotlog.txt -
[2025-12-13 21:13:01] 2025-12-14 05:12:27,488 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929363796/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | INFO     | extracted standard info from prmon json
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 21:13:01] 2025-12-14 05:12:27,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | WARNING  | wrong length of table data, x=[1765688977.0], y=[25241.0] (must be same and length>=4)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | ..............................
[2025-12-13 21:13:01] 2025-12-14 05:12:27,491 | INFO     | . Timing measurements:
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . get job = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . initial setup = 8 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . payload setup = 10 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . stage-in = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . payload execution = 40 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . stage-out = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | . log creation = 0 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | ..............................
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 21:13:01] 2025-12-14 05:12:27,492 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929363796/pilotlog.txt
[2025-12-13 21:13:01] [end log extracts]
[2025-12-13 21:13:01] 2025-12-14 05:12:27,508 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,509 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-13 21:13:01] 2025-12-14 05:12:27,804 | INFO     | time since job start (226s) is within the limit (174528.0s)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | 
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | job summary report
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | --------------------------------------------------
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | PanDA job id: 6929363796
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | task id: 47898763
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-13 21:10:03,367 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-13 21:13:01] 2025-12-14 05:12:27,984 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | pilot state: failed 
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | transexitcode: 65
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | exeerrorcode: 65
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | exitcode: 65
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | cpuconsumptiontime: 17 s
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | nevents: 0
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | neventsw: 0
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | pid: 3651013
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | pgrp: 3651013
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | corecount: 8
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | event service: False
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | sizes: {0: 2283124, 1: 2283977, 12: 2284267, 22: 2284267, 53: 2307453, 54: 2311745, 57: 2311901, 191: 2312067}
[2025-12-13 21:13:01] 2025-12-14 05:12:27,985 | INFO     | --------------------------------------------------
[2025-12-13 21:13:01] 2025-12-14 05:12:27,986 | INFO     | 
[2025-12-13 21:13:01] 2025-12-14 05:12:27,986 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-13 21:13:01] 2025-12-14 05:12:28,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,094 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 21:13:01] 2025-12-14 05:12:28,094 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,094 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 21:13:01] 2025-12-14 05:12:28,094 | INFO     | job 6929363796 has completed (purged errors)
[2025-12-13 21:13:01] 2025-12-14 05:12:28,094 | INFO     | overall cleanup function is called
[2025-12-13 21:13:01] 2025-12-14 05:12:29,101 | INFO     | --- collectZombieJob: --- 10, [3651013]
[2025-12-13 21:13:01] 2025-12-14 05:12:29,101 | INFO     | zombie collector waiting for pid 3651013
[2025-12-13 21:13:01] 2025-12-14 05:12:29,101 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 21:13:01] 2025-12-14 05:12:29,101 | INFO     | collected zombie processes
[2025-12-13 21:13:01] 2025-12-14 05:12:29,101 | INFO     | will attempt to kill all subprocesses of pid=3651013
[2025-12-13 21:13:01] 2025-12-14 05:12:29,907 | INFO     | process IDs to be killed: [3651013] (in reverse order)
[2025-12-13 21:13:01] 2025-12-14 05:12:29,982 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 21:13:01] 2025-12-14 05:12:29,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 21:13:01] 2025-12-14 05:12:29,989 | INFO     | did not find any defunct processes belonging to 3651013
[2025-12-13 21:13:01] 2025-12-14 05:12:29,995 | INFO     | did not find any defunct processes belonging to 3651013
[2025-12-13 21:13:01] 2025-12-14 05:12:29,996 | INFO     | ready for new job
[2025-12-13 21:13:01] 2025-12-14 05:12:29,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 21:13:01] 2025-12-14 05:12:29,997 | INFO     | ***************************************
[2025-12-13 21:13:01] 2025-12-14 05:12:29,997 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 21:13:01] 2025-12-14 05:12:29,997 | INFO     | ***************************************
[2025-12-13 21:13:01] 2025-12-14 05:12:29,997 | INFO     | 
[2025-12-13 21:13:01] 2025-12-14 05:12:29,999 | INFO     | architecture information:
[2025-12-13 21:13:01] 2025-12-14 05:12:29,999 | INFO     | executing command: cat /etc/os-release
[2025-12-13 21:13:01] 2025-12-14 05:12:30,012 | INFO     | cat /etc/os-release:
[2025-12-13 21:13:01] NAME="CentOS Linux"
[2025-12-13 21:13:01] VERSION="7 (Core)"
[2025-12-13 21:13:01] ID="centos"
[2025-12-13 21:13:01] ID_LIKE="rhel fedora"
[2025-12-13 21:13:01] VERSION_ID="7"
[2025-12-13 21:13:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 21:13:01] ANSI_COLOR="0;31"
[2025-12-13 21:13:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 21:13:01] HOME_URL="https://www.centos.org/"
[2025-12-13 21:13:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 21:13:01] 
[2025-12-13 21:13:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 21:13:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 21:13:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 21:13:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 21:13:01] 
[2025-12-13 21:13:01] 2025-12-14 05:12:30,012 | INFO     | ***************************************
[2025-12-13 21:13:01] 2025-12-14 05:12:30,516 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | INFO     | sufficient remaining disk space (1378866954240 B)
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | INFO     | update_server=False
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 21:13:01] 2025-12-14 05:12:30,588 | INFO     | aborting loop
[2025-12-13 21:13:01] 2025-12-14 05:12:30,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 21:13:01] 2025-12-14 05:12:30,595 | INFO     | all job control threads have been joined
[2025-12-13 21:13:01] 2025-12-14 05:12:30,846 | INFO     | all payload control threads have been joined
[2025-12-13 21:13:01] 2025-12-14 05:12:31,083 | INFO     | all data control threads have been joined
[2025-12-13 21:13:01] 2025-12-14 05:12:31,201 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 21:13:01] 2025-12-14 05:12:31,593 | INFO     | [job] retrieve thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:31,594 | INFO     | [job] job monitor thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:31,600 | INFO     | [job] control thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:31,852 | INFO     | [payload] control thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:31,892 | INFO     | [job] validate thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:31,931 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:31,973 | INFO     | [payload] failed_post thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,014 | INFO     | [payload] validate_post thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,023 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,089 | INFO     | [data] control thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,520 | INFO     | [data] copytool_in thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,597 | INFO     | [data] copytool_out thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:32,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 21:13:01] 2025-12-14 05:12:33,078 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:34,004 | INFO     | [job] queue monitor thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:35,210 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 21:13:01] 2025-12-14 05:12:41,138 | INFO     | [monitor] cgroup control has ended
[2025-12-13 21:13:01] 2025-12-14 05:12:41,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346991224640)>', '<ExcThread(monitor, started 140346671470336)>']
[2025-12-13 21:13:01] 2025-12-14 05:12:46,189 | INFO     | all workflow threads have been joined
[2025-12-13 21:13:01] 2025-12-14 05:12:46,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 21:13:01] 2025-12-14 05:12:46,189 | INFO     | traces error code: 0
[2025-12-13 21:13:01] 2025-12-14 05:12:46,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 21:13:01] 2025-12-14 05:13:01,234 | INFO     | PID=3644089 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 21:13:01] 2025-12-14 05:13:01,235 | INFO     | .. there are 26 such processes running
[2025-12-13 21:13:01] 2025-12-14 05:13:01,235 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 21:13:01] 2025-12-14 05:13:01,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 21:13:01] 2025-12-14 05:13:01,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 21:13:01] 2025-12-14 05:13:01,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 21:13:01] 2025-12-14 05:13:01,236 | CRITICAL | thread 'MainThread' is not alive
[2025-12-13 21:13:01] 2025-12-14 05:13:01,236 | INFO     | [monitor] control thread has ended
[2025-12-13 21:13:01] 2025-12-14 05:13:01,592 [wrapper] ==== pilot stdout END ====
[2025-12-13 21:13:01] 2025-12-14 05:13:01,623 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 21:13:01] 2025-12-14 05:13:01,656 [wrapper] pilotpid: 3644089
[2025-12-13 21:13:01] 2025-12-14 05:13:01,672 [wrapper] Pilot exit status: 0
[2025-12-13 21:13:01] 2025-12-14 05:13:01,689 [wrapper] pandaids: 6929363796
[2025-12-13 21:13:01] 2025-12-14 05:13:01,725 [wrapper] cleanup supervisor_pilot 3644095 3644090
[2025-12-13 21:13:01] 2025-12-14 05:13:01,728 [wrapper] Test setup, not cleaning
[2025-12-13 21:13:01] 2025-12-14 05:13:01,730 [wrapper] apfmon messages muted
[2025-12-13 21:13:01] 2025-12-14 05:13:01,731 [wrapper] ==== wrapper stdout END ====
[2025-12-13 21:13:01] 2025-12-14 05:13:01,733 [wrapper] ==== wrapper stderr END ====
[2025-12-13 21:13:01]  *** Error codes and diagnostics ***
[2025-12-13 21:13:01]     "exeErrorCode": 65,
[2025-12-13 21:13:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 21:13:01]     "pilotErrorCode": 1305,
[2025-12-13 21:13:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 21:13:01]  *** Listing of results directory ***
[2025-12-13 21:13:01] total 220512
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc    579449 Dec 13 13:19 pilot3.tar.gz
[2025-12-13 21:13:01] -rwx------. 1 boinc boinc     36322 Dec 13 13:23 runpilot2-wrapper.sh
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc      5112 Dec 13 13:25 queuedata.json
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc       100 Dec 13 21:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 21:13:01] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 21:08 run_atlas
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc       105 Dec 13 21:08 job.xml
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc      6446 Dec 13 21:08 init_data.xml
[2025-12-13 21:13:01] -rw-r--r--. 2 boinc boinc 221665104 Dec 13 21:08 EVNT.47898761._000156.pool.root.1
[2025-12-13 21:13:01] -rw-r--r--. 2 boinc boinc     15847 Dec 13 21:08 start_atlas.sh
[2025-12-13 21:13:01] drwxrwx--x. 2 boinc boinc      4096 Dec 13 21:08 shared
[2025-12-13 21:13:01] -rw-r--r--. 2 boinc boinc    592395 Dec 13 21:08 input.tar.gz
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc         0 Dec 13 21:08 boinc_lockfile
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc      2504 Dec 13 21:08 pandaJob.out
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc    991728 Dec 13 21:08 agis_schedconf.cvmfs.json
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc   1516240 Dec 13 21:08 agis_ddmendpoints.agis.ALL.json
[2025-12-13 21:13:01] drwx------. 5 boinc boinc      4096 Dec 13 21:08 pilot3
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc       524 Dec 13 21:10 boinc_task_state.xml
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc       966 Dec 13 21:10 memory_monitor_summary.json
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc     21588 Dec 13 21:10 log.47898763._007013.job.log.tgz.1
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc      8394 Dec 13 21:12 heartbeat.json
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc      8192 Dec 13 21:12 boinc_mmap_file
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc        22 Dec 13 21:12 wrapper_checkpoint.txt
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc        95 Dec 13 21:13 pilot_heartbeat.json
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc       893 Dec 13 21:13 pilotlog.txt
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc     89862 Dec 13 21:13 log.47898763._007013.job.log.1
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc       188 Dec 13 21:13 output.list
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc       620 Dec 13 21:13 runtime_log
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc    133120 Dec 13 21:13 result.tar.gz
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc       647 Dec 13 21:13 UGbMDm7Fmo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9UUKDm9cZain.diag
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc      8634 Dec 13 21:13 runtime_log.err
[2025-12-13 21:13:01] -rw-r--r--. 1 boinc boinc     21800 Dec 13 21:13 stderr.txt
[2025-12-13 21:13:01] No HITS result produced
[2025-12-13 21:13:01]  *** Contents of shared directory: ***
[2025-12-13 21:13:01] total 217204
[2025-12-13 21:13:01] -rw-r--r--. 2 boinc boinc 221665104 Dec 13 21:08 ATLAS.root_0
[2025-12-13 21:13:01] -rw-r--r--. 2 boinc boinc     15847 Dec 13 21:08 start_atlas.sh
[2025-12-13 21:13:01] -rw-r--r--. 2 boinc boinc    592395 Dec 13 21:08 input.tar.gz
[2025-12-13 21:13:01] -rw-------. 1 boinc boinc    133120 Dec 13 21:13 result.tar.gz
21:13:02 (3640074): run_atlas exited; CPU time 26.132861
21:13:02 (3640074): called boinc_finish(0)

</stderr_txt>
]]>

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