Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:09 (3934489): wrapper (7.7.26015): starting
00:04:09 (3934489): wrapper: running run_atlas (--nthreads 9)
[2025-12-14 00:04:09] Arguments: --nthreads 9
[2025-12-14 00:04:09] Threads: 9
[2025-12-14 00:04:09] Checking for CVMFS
[2025-12-14 00:04:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 00:04:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 00:04:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 00:04:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 00:04:14] 2.13.3.0 12022 55390 371028 153984 0 410 18179233 32935937 41616 16776704 0 115285900 99.519 137665486 12156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 00:04:14] CVMFS is ok
[2025-12-14 00:04:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:04:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:04:14] Further information can be found at the LHC@home message board.
[2025-12-14 00:04:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:04:14] Checking for apptainer binary...
[2025-12-14 00:04:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 00:04:14] Running /usr/bin/apptainer --version
[2025-12-14 00:04:14] apptainer version 1.4.5-2.el9
[2025-12-14 00:04:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:04:16] c6-12-25-4.aglt2.org
[2025-12-14 00:04:16] apptainer works
[2025-12-14 00:04:16] Set ATHENA_PROC_NUMBER=9
[2025-12-14 00:04:16] Set ATHENA_CORE_NUMBER=9
[2025-12-14 00:04:17] Starting ATLAS job with PandaID=6929363855
[2025-12-14 00:04:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 15:19:32]  *** The last 200 lines of the pilot log: ***
[2025-12-14 15:19:32] 2025-12-14 20:18:16,494 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 15:19:32] 2025-12-14 20:18:16,494 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 15:19:32] 2025-12-14 20:18:16,495 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 15:19:32] 2025-12-14 20:18:16,496 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 15:19:32] 2025-12-14 20:18:16,552 | INFO     | monitor loop #1343: job 0:6929363855 is in state 'finished'
[2025-12-14 15:19:32] 2025-12-14 20:18:16,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 15:19:32] 2025-12-14 20:18:16,791 | INFO     | fitting pss+swap vs Time
[2025-12-14 15:19:32] 2025-12-14 20:18:16,812 | INFO     | sum of square deviations: 218590466160.76398
[2025-12-14 15:19:32] 2025-12-14 20:18:17,050 | INFO     | sum of deviations: 857332947649.2365
[2025-12-14 15:19:32] 2025-12-14 20:18:17,051 | INFO     | mean x: 1765716179.1123595
[2025-12-14 15:19:32] 2025-12-14 20:18:17,051 | INFO     | mean y: 2498757.887640449
[2025-12-14 15:19:32] 2025-12-14 20:18:17,051 | INFO     | intersect: -6922810854.824408
[2025-12-14 15:19:32] 2025-12-14 20:18:17,104 | INFO     | chi2: 9.093106565453297
[2025-12-14 15:19:32] 2025-12-14 20:18:17,136 | INFO     | sum of square deviations: 214926821636.28604
[2025-12-14 15:19:32] 2025-12-14 20:18:17,434 | INFO     | sum of deviations: 1024600849059.9187
[2025-12-14 15:19:32] 2025-12-14 20:18:17,434 | INFO     | mean x: 1765716026.6112995
[2025-12-14 15:19:32] 2025-12-14 20:18:17,435 | INFO     | mean y: 2505704.8282485874
[2025-12-14 15:19:32] 2025-12-14 20:18:17,435 | INFO     | intersect: -8415029744.173173
[2025-12-14 15:19:32] 2025-12-14 20:18:17,444 | INFO     | chi2: 7.025403875827983
[2025-12-14 15:19:32] 2025-12-14 20:18:17,445 | INFO     | current chi2=7.025403875827983 (change=22.73923300845246 %)
[2025-12-14 15:19:32] 2025-12-14 20:18:17,445 | INFO     | right removable region: 884
[2025-12-14 15:19:32] 2025-12-14 20:18:17,473 | INFO     | sum of square deviations: 214926596710.91058
[2025-12-14 15:19:32] 2025-12-14 20:18:17,954 | INFO     | sum of deviations: 565642991825.3403
[2025-12-14 15:19:32] 2025-12-14 20:18:18,036 | INFO     | mean x: 1765716331.6180792
[2025-12-14 15:19:32] 2025-12-14 20:18:18,036 | INFO     | mean y: 2510895.341242938
[2025-12-14 15:19:32] 2025-12-14 20:18:18,037 | INFO     | intersect: -4644494565.200782
[2025-12-14 15:19:32] 2025-12-14 20:18:18,350 | INFO     | chi2: 5.2630770422359925
[2025-12-14 15:19:32] 2025-12-14 20:18:18,352 | INFO     | current chi2=5.2630770422359925 (change=42.1201433816736 %)
[2025-12-14 15:19:32] 2025-12-14 20:18:18,355 | INFO     | sum of square deviations: 211303890823.49896
[2025-12-14 15:19:32] 2025-12-14 20:18:18,586 | INFO     | sum of deviations: 349648851492.4148
[2025-12-14 15:19:32] 2025-12-14 20:18:18,586 | INFO     | mean x: 1765716484.1238637
[2025-12-14 15:19:32] 2025-12-14 20:18:18,587 | INFO     | mean y: 2519985.289772727
[2025-12-14 15:19:32] 2025-12-14 20:18:18,587 | INFO     | intersect: -2919247041.001421
[2025-12-14 15:19:32] 2025-12-14 20:18:18,811 | INFO     | chi2: 3.237141164074193
[2025-12-14 15:19:32] 2025-12-14 20:18:18,817 | INFO     | current chi2=3.237141164074193 (change=38.49337301931439 %)
[2025-12-14 15:19:32] 2025-12-14 20:18:18,820 | INFO     | sum of square deviations: 207722116058.02722
[2025-12-14 15:19:32] 2025-12-14 20:18:18,942 | INFO     | sum of deviations: 237347276254.88348
[2025-12-14 15:19:32] 2025-12-14 20:18:18,943 | INFO     | mean x: 1765716636.6297143
[2025-12-14 15:19:32] 2025-12-14 20:18:18,943 | INFO     | mean y: 2524765.5737142856
[2025-12-14 15:19:32] 2025-12-14 20:18:18,943 | INFO     | intersect: -2015016949.7481353
[2025-12-14 15:19:32] 2025-12-14 20:18:18,952 | INFO     | chi2: 2.712062455910896
[2025-12-14 15:19:32] 2025-12-14 20:18:18,953 | INFO     | current chi2=2.712062455910896 (change=16.22044518758165 %)
[2025-12-14 15:19:32] 2025-12-14 20:18:18,953 | INFO     | left removable region: 30
[2025-12-14 15:19:32] 2025-12-14 20:18:18,967 | INFO     | sum of square deviations: 193121448319.31155
[2025-12-14 15:19:32] 2025-12-14 20:18:19,291 | INFO     | monitor loop #1344: job 0:6929363855 is in state 'finished'
[2025-12-14 15:19:32] 2025-12-14 20:18:19,291 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 15:19:32] 2025-12-14 20:18:19,432 | INFO     | sum of deviations: 212089230720.88547
[2025-12-14 15:19:32] 2025-12-14 20:18:19,432 | INFO     | mean x: 1765716911.1311476
[2025-12-14 15:19:32] 2025-12-14 20:18:19,432 | INFO     | mean y: 2540441.545667447
[2025-12-14 15:19:32] 2025-12-14 20:18:19,433 | INFO     | intersect: -1936599641.6079829
[2025-12-14 15:19:32] 2025-12-14 20:18:19,483 | INFO     | chi2: 0.08150476269741269
[2025-12-14 15:19:32] 2025-12-14 20:18:19,484 | INFO     | current memory leak: 1.10 B/s (using 854 data points, chi2=0.08)
[2025-12-14 15:19:32] 2025-12-14 20:18:19,522 | INFO     | could have reported an average CPU frequency of 999 MHz (33 samples)
[2025-12-14 15:19:32] 2025-12-14 20:18:19,522 | INFO     | ..............................
[2025-12-14 15:19:32] 2025-12-14 20:18:19,523 | INFO     | . Timing measurements:
[2025-12-14 15:19:32] 2025-12-14 20:18:19,523 | INFO     | . get job = 1 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,523 | INFO     | . initial setup = 17 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,523 | INFO     | . payload setup = 79 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,523 | INFO     | . stage-in = 1 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,524 | INFO     | . payload execution = 54324 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,524 | INFO     | . stage-out = 89 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,524 | INFO     | . log creation = 6 s
[2025-12-14 15:19:32] 2025-12-14 20:18:19,524 | INFO     | ..............................
[2025-12-14 15:19:32] 2025-12-14 20:18:21,476 | INFO     | 
[2025-12-14 15:19:32] 2025-12-14 20:18:21,476 | INFO     | job summary report
[2025-12-14 15:19:32] 2025-12-14 20:18:21,477 | INFO     | --------------------------------------------------
[2025-12-14 15:19:32] 2025-12-14 20:18:21,477 | INFO     | PanDA job id: 6929363855
[2025-12-14 15:19:32] 2025-12-14 20:18:21,477 | INFO     | task id: 47898763
[2025-12-14 15:19:32] 2025-12-14 20:18:21,477 | INFO     | errors: (none)
[2025-12-14 15:19:32] 2025-12-14 20:18:21,478 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 15:19:32] 2025-12-14 20:18:21,478 | INFO     | pilot state: finished 
[2025-12-14 15:19:32] 2025-12-14 20:18:21,478 | INFO     | transexitcode: 0
[2025-12-14 15:19:32] 2025-12-14 20:18:21,478 | INFO     | exeerrorcode: 0
[2025-12-14 15:19:32] 2025-12-14 20:18:21,479 | INFO     | exeerrordiag: 
[2025-12-14 15:19:32] 2025-12-14 20:18:21,479 | INFO     | exitcode: 0
[2025-12-14 15:19:32] 2025-12-14 20:18:21,479 | INFO     | exitmsg: OK
[2025-12-14 15:19:32] 2025-12-14 20:18:21,479 | INFO     | cpuconsumptiontime: 156033 s
[2025-12-14 15:19:32] 2025-12-14 20:18:21,480 | INFO     | nevents: 400
[2025-12-14 15:19:32] 2025-12-14 20:18:21,480 | INFO     | neventsw: 0
[2025-12-14 15:19:32] 2025-12-14 20:18:21,480 | INFO     | pid: 3998069
[2025-12-14 15:19:32] 2025-12-14 20:18:21,480 | INFO     | pgrp: 3998069
[2025-12-14 15:19:32] 2025-12-14 20:18:21,480 | INFO     | corecount: 9
[2025-12-14 15:19:32] 2025-12-14 20:18:21,481 | INFO     | event service: False
[2025-12-14 15:19:32] 2025-12-14 20:18:21,481 | INFO     | sizes: {0: 2283124, 3: 2283725, 5: 2283809, 9: 2283865, 10: 2283893, 14: 2283893, 17: 2284220, 22: 2284248, 39: 2284276, 52: 2284304, 64: 2284332, 74: 2284930, 79:
[2025-12-14 15:19:32] 2025-12-14 20:18:21,481 | INFO     | --------------------------------------------------
[2025-12-14 15:19:32] 2025-12-14 20:18:21,481 | INFO     | 
[2025-12-14 15:19:32] 2025-12-14 20:18:21,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-14 15:19:32] 2025-12-14 20:18:21,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,572 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,578 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,579 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,579 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,579 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,580 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 15:19:32] 2025-12-14 20:18:21,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,580 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 15:19:32] 2025-12-14 20:18:21,585 | INFO     | job 6929363855 has completed (purged errors)
[2025-12-14 15:19:32] 2025-12-14 20:18:21,585 | INFO     | overall cleanup function is called
[2025-12-14 15:19:32] 2025-12-14 20:18:22,695 | INFO     | --- collectZombieJob: --- 10, [3998069]
[2025-12-14 15:19:32] 2025-12-14 20:18:22,695 | INFO     | zombie collector waiting for pid 3998069
[2025-12-14 15:19:32] 2025-12-14 20:18:22,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 15:19:32] 2025-12-14 20:18:22,696 | INFO     | collected zombie processes
[2025-12-14 15:19:32] 2025-12-14 20:18:22,696 | INFO     | will attempt to kill all subprocesses of pid=3998069
[2025-12-14 15:19:32] 2025-12-14 20:18:34,753 | INFO     | PID=3954553 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-14 15:19:32] 2025-12-14 20:18:34,754 | INFO     | .. there are 47 such processes running
[2025-12-14 15:19:32] 2025-12-14 20:18:35,671 | INFO     | process IDs to be killed: [3998069] (in reverse order)
[2025-12-14 15:19:32] 2025-12-14 20:18:36,163 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 15:19:32] 2025-12-14 20:18:36,169 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 15:19:32] 2025-12-14 20:18:36,474 | INFO     | did not find any defunct processes belonging to 3998069
[2025-12-14 15:19:32] 2025-12-14 20:18:36,625 | INFO     | did not find any defunct processes belonging to 3998069
[2025-12-14 15:19:32] 2025-12-14 20:18:36,625 | INFO     | ready for new job
[2025-12-14 15:19:32] 2025-12-14 20:18:36,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 15:19:32] 2025-12-14 20:18:36,653 | INFO     | ***************************************
[2025-12-14 15:19:32] 2025-12-14 20:18:36,654 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 15:19:32] 2025-12-14 20:18:36,654 | INFO     | ***************************************
[2025-12-14 15:19:32] 2025-12-14 20:18:36,654 | INFO     | 
[2025-12-14 15:19:32] 2025-12-14 20:18:36,730 | INFO     | architecture information:
[2025-12-14 15:19:32] 2025-12-14 20:18:36,763 | INFO     | executing command: cat /etc/os-release
[2025-12-14 15:19:32] 2025-12-14 20:18:37,033 | INFO     | cat /etc/os-release:
[2025-12-14 15:19:32] NAME="CentOS Linux"
[2025-12-14 15:19:32] VERSION="7 (Core)"
[2025-12-14 15:19:32] ID="centos"
[2025-12-14 15:19:32] ID_LIKE="rhel fedora"
[2025-12-14 15:19:32] VERSION_ID="7"
[2025-12-14 15:19:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 15:19:32] ANSI_COLOR="0;31"
[2025-12-14 15:19:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 15:19:32] HOME_URL="https://www.centos.org/"
[2025-12-14 15:19:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 15:19:32] 
[2025-12-14 15:19:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 15:19:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 15:19:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 15:19:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 15:19:32] 
[2025-12-14 15:19:32] 2025-12-14 20:18:37,034 | INFO     | ***************************************
[2025-12-14 15:19:32] 2025-12-14 20:18:37,544 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-14 15:19:32] 2025-12-14 20:18:37,746 | INFO     | sufficient remaining disk space (92745498624 B)
[2025-12-14 15:19:32] 2025-12-14 20:18:37,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 15:19:32] 2025-12-14 20:18:37,747 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 15:19:32] 2025-12-14 20:18:37,748 | INFO     | update_server=False
[2025-12-14 15:19:32] 2025-12-14 20:18:37,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 15:19:32] 2025-12-14 20:18:37,851 | INFO     | all data control threads have been joined
[2025-12-14 15:19:32] 2025-12-14 20:18:38,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 15:19:32] 2025-12-14 20:18:38,197 | INFO     | all job control threads have been joined
[2025-12-14 15:19:32] 2025-12-14 20:18:38,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 15:19:32] 2025-12-14 20:18:38,337 | INFO     | aborting loop
[2025-12-14 15:19:32] 2025-12-14 20:18:38,535 | INFO     | all payload control threads have been joined
[2025-12-14 15:19:32] 2025-12-14 20:18:38,760 | INFO     | [job] retrieve thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:38,789 | INFO     | [payload] validate_post thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:38,833 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:38,834 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:38,857 | INFO     | [data] control thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:38,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 15:19:32] 2025-12-14 20:18:39,113 | INFO     | [data] copytool_in thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,129 | INFO     | [job] validate thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,203 | INFO     | [job] control thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 15:19:32] 2025-12-14 20:18:39,215 | INFO     | [payload] failed_post thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,344 | INFO     | [job] job monitor thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,541 | INFO     | [payload] control thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,890 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:39,900 | INFO     | [job] queue monitor thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:40,191 | INFO     | [data] copytool_out thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:40,228 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:18:43,236 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 15:19:32] 2025-12-14 20:19:21,749 | INFO     | [monitor] cgroup control has ended
[2025-12-14 15:19:32] 2025-12-14 20:19:22,586 | INFO     | PID=3954553 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 15:19:32] 2025-12-14 20:19:22,586 | INFO     | .. there are 47 such processes running
[2025-12-14 15:19:32] 2025-12-14 20:19:22,587 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 15:19:32] 2025-12-14 20:19:22,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 15:19:32] 2025-12-14 20:19:22,587 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 15:19:32] 2025-12-14 20:19:23,782 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140584790902592)>', '<ExcThread(monitor, started 140584438179584)>']
[2025-12-14 15:19:32] 2025-12-14 20:19:24,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 15:19:32] 2025-12-14 20:19:24,598 | INFO     | [monitor] control thread has ended
[2025-12-14 15:19:32] 2025-12-14 20:19:28,808 | INFO     | all workflow threads have been joined
[2025-12-14 15:19:32] 2025-12-14 20:19:28,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 15:19:32] 2025-12-14 20:19:28,809 | INFO     | traces error code: 0
[2025-12-14 15:19:32] 2025-12-14 20:19:28,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 15:19:32] 2025-12-14 20:19:31,014 [wrapper] ==== pilot stdout END ====
[2025-12-14 15:19:32] 2025-12-14 20:19:31,085 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 15:19:32] 2025-12-14 20:19:31,114 [wrapper] pilotpid: 3954553
[2025-12-14 15:19:32] 2025-12-14 20:19:31,143 [wrapper] Pilot exit status: 0
[2025-12-14 15:19:32] 2025-12-14 20:19:31,420 [wrapper] pandaids: 6929363855
[2025-12-14 15:19:32] 2025-12-14 20:19:31,901 [wrapper] cleanup supervisor_pilot 2531111 3954554
[2025-12-14 15:19:32] 2025-12-14 20:19:31,919 [wrapper] Test setup, not cleaning
[2025-12-14 15:19:32] 2025-12-14 20:19:31,945 [wrapper] apfmon messages muted
[2025-12-14 15:19:32] 2025-12-14 20:19:32,028 [wrapper] ==== wrapper stdout END ====
[2025-12-14 15:19:32] 2025-12-14 20:19:32,063 [wrapper] ==== wrapper stderr END ====
[2025-12-14 15:19:32]  *** Error codes and diagnostics ***
[2025-12-14 15:19:32]     "exeErrorCode": 0,
[2025-12-14 15:19:32]     "exeErrorDiag": "",
[2025-12-14 15:19:32]     "pilotErrorCode": 0,
[2025-12-14 15:19:32]     "pilotErrorDiag": "",
[2025-12-14 15:19:32]  *** Listing of results directory ***
[2025-12-14 15:19:32] total 441332
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 16:19 pilot3.tar.gz
[2025-12-14 15:19:32] -rwx------. 1 boincer umatlas     36322 Dec 13 16:23 runpilot2-wrapper.sh
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 16:25 queuedata.json
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas       100 Dec 14 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 15:19:32] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 00:04 run_atlas
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas       105 Dec 14 00:04 job.xml
[2025-12-14 15:19:32] -rw-r--r--. 2 boincer umatlas 224155618 Dec 14 00:04 EVNT.47898761._000158.pool.root.1
[2025-12-14 15:19:32] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 00:04 start_atlas.sh
[2025-12-14 15:19:32] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 00:04 shared
[2025-12-14 15:19:32] -rw-r--r--. 2 boincer umatlas    592396 Dec 14 00:04 input.tar.gz
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas         0 Dec 14 00:04 boinc_lockfile
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas      2504 Dec 14 00:04 pandaJob.out
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas        57 Dec 14 00:04 setup.sh.local
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas    991728 Dec 14 00:06 agis_schedconf.cvmfs.json
[2025-12-14 15:19:32] drwx------. 5 boincer umatlas      4096 Dec 14 00:06 pilot3
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas 214730054 Dec 14 15:11 HITS.47898763._007072.pool.root.1
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas       532 Dec 14 15:11 boinc_task_state.xml
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas      6879 Dec 14 15:12 init_data.xml
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas      1041 Dec 14 15:15 memory_monitor_summary.json
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas   1516240 Dec 14 15:15 agis_ddmendpoints.agis.ALL.json
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas    776472 Dec 14 15:16 log.47898763._007072.job.log.tgz.1
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas      7834 Dec 14 15:18 heartbeat.json
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas        96 Dec 14 15:18 pilot_heartbeat.json
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas      4824 Dec 14 15:19 pilotlog.txt
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 15:19 boinc_mmap_file
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas   3784108 Dec 14 15:19 log.47898763._007072.job.log.1
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas       357 Dec 14 15:19 output.list
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas       620 Dec 14 15:19 runtime_log
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas   4577280 Dec 14 15:19 result.tar.gz
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas      9353 Dec 14 15:19 runtime_log.err
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas       662 Dec 14 15:19 MzzKDmCGmo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPLQKDmTR5zUn.diag
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas        29 Dec 14 15:19 wrapper_checkpoint.txt
[2025-12-14 15:19:32] -rw-r--r--. 1 boincer umatlas     21331 Dec 14 15:19 stderr.txt
[2025-12-14 15:19:32] HITS file was successfully produced:
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas 214730054 Dec 14 15:11 shared/HITS.pool.root.1
[2025-12-14 15:19:32]  *** Contents of shared directory: ***
[2025-12-14 15:19:32] total 433676
[2025-12-14 15:19:32] -rw-r--r--. 2 boincer umatlas 224155618 Dec 14 00:04 ATLAS.root_0
[2025-12-14 15:19:32] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 00:04 start_atlas.sh
[2025-12-14 15:19:32] -rw-r--r--. 2 boincer umatlas    592396 Dec 14 00:04 input.tar.gz
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas 214730054 Dec 14 15:11 HITS.pool.root.1
[2025-12-14 15:19:32] -rw-------. 1 boincer umatlas   4577280 Dec 14 15:19 result.tar.gz
15:19:34 (3934489): run_atlas exited; CPU time 159814.434741
15:19:34 (3934489): called boinc_finish(0)

</stderr_txt>
]]>

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