Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:17 (3012973): wrapper (7.7.26015): starting
00:11:17 (3012973): wrapper: running run_atlas (--nthreads 9)
[2025-12-14 00:11:17] Arguments: --nthreads 9
[2025-12-14 00:11:17] Threads: 9
[2025-12-14 00:11:17] Checking for CVMFS
[2025-12-14 00:11:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 00:11:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 00:11:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 00:11:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 00:11:19] 2.13.2.0 6383 59831 257912 153984 2 350 35239015 40960001 11745 16776704 0 74891897 99.733 47488757 37072 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 00:11:19] CVMFS is ok
[2025-12-14 00:11:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:11:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:11:19] Further information can be found at the LHC@home message board.
[2025-12-14 00:11:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:11:19] Checking for apptainer binary...
[2025-12-14 00:11:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 00:11:19] Running /usr/bin/apptainer --version
[2025-12-14 00:11:19] apptainer version 1.4.4-1.el9
[2025-12-14 00:11:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:11:21] c-210-37-2.aglt2.org
[2025-12-14 00:11:21] apptainer works
[2025-12-14 00:11:21] Set ATHENA_PROC_NUMBER=9
[2025-12-14 00:11:21] Set ATHENA_CORE_NUMBER=9
[2025-12-14 00:11:21] Starting ATLAS job with PandaID=6929716003
[2025-12-14 00:11:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 07:28:03]  *** The last 200 lines of the pilot log: ***
[2025-12-14 07:28:03] 2025-12-14 12:27:29,527 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 07:28:03] 2025-12-14 12:27:29,531 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2826.4963392857144
[2025-12-14 07:28:03] 2025-12-14 12:27:29,551 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6929716003/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,551 | INFO     | extracted standard info from prmon json
[2025-12-14 07:28:03] 2025-12-14 12:27:29,551 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 07:28:03] 2025-12-14 12:27:29,551 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 07:28:03] 2025-12-14 12:27:29,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 07:28:03] 2025-12-14 12:27:29,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 07:28:03] 2025-12-14 12:27:29,565 | INFO     | fitting pss+swap vs Time
[2025-12-14 07:28:03] 2025-12-14 12:27:29,567 | INFO     | sum of square deviations: 23803269531.821175
[2025-12-14 07:28:03] 2025-12-14 12:27:29,571 | INFO     | sum of deviations: 74332298900.73895
[2025-12-14 07:28:03] 2025-12-14 12:27:29,606 | INFO     | mean x: 1765702253.4682353
[2025-12-14 07:28:03] 2025-12-14 12:27:29,606 | INFO     | mean y: 2533239.0917647057
[2025-12-14 07:28:03] 2025-12-14 12:27:29,607 | INFO     | intersect: -5511360871.087117
[2025-12-14 07:28:03] 2025-12-14 12:27:29,607 | INFO     | chi2: 5.261134517129005
[2025-12-14 07:28:03] 2025-12-14 12:27:29,608 | INFO     | sum of square deviations: 22973019209.65706
[2025-12-14 07:28:03] 2025-12-14 12:27:29,615 | INFO     | sum of deviations: 162051009137.2574
[2025-12-14 07:28:03] 2025-12-14 12:27:29,615 | INFO     | mean x: 1765702100.9714286
[2025-12-14 07:28:03] 2025-12-14 12:27:29,616 | INFO     | mean y: 2549273.8547619046
[2025-12-14 07:28:03] 2025-12-14 12:27:29,616 | INFO     | intersect: -12452661975.779978
[2025-12-14 07:28:03] 2025-12-14 12:27:29,616 | INFO     | chi2: 2.8092849849918444
[2025-12-14 07:28:03] 2025-12-14 12:27:29,616 | INFO     | current chi2=2.8092849849918444 (change=46.60305727128855 %)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,617 | INFO     | sum of square deviations: 22162329513.532383
[2025-12-14 07:28:03] 2025-12-14 12:27:29,624 | INFO     | sum of deviations: 159467959544.01926
[2025-12-14 07:28:03] 2025-12-14 12:27:29,624 | INFO     | mean x: 1765701948.4771085
[2025-12-14 07:28:03] 2025-12-14 12:27:29,625 | INFO     | mean y: 2548787.9493975905
[2025-12-14 07:28:03] 2025-12-14 12:27:29,625 | INFO     | intersect: -12702473340.460627
[2025-12-14 07:28:03] 2025-12-14 12:27:29,625 | INFO     | chi2: 2.8098228762169684
[2025-12-14 07:28:03] 2025-12-14 12:27:29,625 | INFO     | current chi2=2.8098228762169684 (change=-0.01914690848374337 %)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,625 | INFO     | right removable region: 414
[2025-12-14 07:28:03] 2025-12-14 12:27:29,626 | INFO     | sum of square deviations: 22972923500.711914
[2025-12-14 07:28:03] 2025-12-14 12:27:29,637 | INFO     | sum of deviations: -34236870437.930965
[2025-12-14 07:28:03] 2025-12-14 12:27:29,638 | INFO     | mean x: 1765702405.9738095
[2025-12-14 07:28:03] 2025-12-14 12:27:29,638 | INFO     | mean y: 2553134.188095238
[2025-12-14 07:28:03] 2025-12-14 12:27:29,638 | INFO     | intersect: 2634004220.6549497
[2025-12-14 07:28:03] 2025-12-14 12:27:29,638 | INFO     | chi2: 2.791826934859722
[2025-12-14 07:28:03] 2025-12-14 12:27:29,638 | INFO     | current chi2=2.791826934859722 (change=46.934887793303965 %)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,639 | INFO     | sum of square deviations: 22162112719.57595
[2025-12-14 07:28:03] 2025-12-14 12:27:29,646 | INFO     | sum of deviations: -65544253832.501205
[2025-12-14 07:28:03] 2025-12-14 12:27:29,646 | INFO     | mean x: 1765702558.4795182
[2025-12-14 07:28:03] 2025-12-14 12:27:29,647 | INFO     | mean y: 2559011.2939759037
[2025-12-14 07:28:03] 2025-12-14 12:27:29,647 | INFO     | intersect: 5224608828.929447
[2025-12-14 07:28:03] 2025-12-14 12:27:29,647 | INFO     | chi2: 2.593395294422071
[2025-12-14 07:28:03] 2025-12-14 12:27:29,647 | INFO     | current chi2=2.593395294422071 (change=7.10759101719253 %)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,647 | INFO     | left removable region: 20
[2025-12-14 07:28:03] 2025-12-14 12:27:29,648 | INFO     | sum of square deviations: 18965200275.83748
[2025-12-14 07:28:03] 2025-12-14 12:27:29,659 | INFO     | sum of deviations: 7455371777.725888
[2025-12-14 07:28:03] 2025-12-14 12:27:29,659 | INFO     | mean x: 1765702527.9796953
[2025-12-14 07:28:03] 2025-12-14 12:27:29,659 | INFO     | mean y: 2578228.2157360404
[2025-12-14 07:28:03] 2025-12-14 12:27:29,660 | INFO     | intersect: -691533545.1110432
[2025-12-14 07:28:03] 2025-12-14 12:27:29,660 | INFO     | chi2: 0.035751418514823725
[2025-12-14 07:28:03] 2025-12-14 12:27:29,660 | INFO     | current memory leak: 0.39 B/s (using 394 data points, chi2=0.04)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | could have reported an average CPU frequency of 2897 MHz (18 samples)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | ..............................
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . Timing measurements:
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . get job = 0 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . initial setup = 9 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . payload setup = 44 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . stage-in = 0 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . payload execution = 25904 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,661 | INFO     | . stage-out = 6 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,662 | INFO     | . log creation = 1 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,662 | INFO     | ..............................
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | 
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | job summary report
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | --------------------------------------------------
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | PanDA job id: 6929716003
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | task id: 47899042
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | errors: (none)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | pilot state: finished 
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | transexitcode: 0
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | exeerrorcode: 0
[2025-12-14 07:28:03] 2025-12-14 12:27:29,835 | INFO     | exeerrordiag: 
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | exitcode: 0
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | exitmsg: OK
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | cpuconsumptiontime: 40457 s
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | nevents: 400
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | neventsw: 0
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | pid: 3036293
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | pgrp: 3036293
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | corecount: 9
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | event service: False
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | sizes: {0: 2283764, 1: 2283963, 12: 2283963, 24: 2283991, 35: 2284019, 42: 2284309, 46: 2284493, 25954: 2320750, 25961: 2329748, 25962: 2329804, 25999: 2329998}
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | --------------------------------------------------
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | 
[2025-12-14 07:28:03] 2025-12-14 12:27:29,836 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-14 07:28:03] 2025-12-14 12:27:29,878 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,879 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,879 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 07:28:03] 2025-12-14 12:27:29,886 | INFO     | job 6929716003 has completed (purged errors)
[2025-12-14 07:28:03] 2025-12-14 12:27:29,886 | INFO     | overall cleanup function is called
[2025-12-14 07:28:03] 2025-12-14 12:27:30,910 | INFO     | --- collectZombieJob: --- 10, [3036293]
[2025-12-14 07:28:03] 2025-12-14 12:27:30,912 | INFO     | zombie collector waiting for pid 3036293
[2025-12-14 07:28:03] 2025-12-14 12:27:30,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 07:28:03] 2025-12-14 12:27:30,912 | INFO     | collected zombie processes
[2025-12-14 07:28:03] 2025-12-14 12:27:30,912 | INFO     | will attempt to kill all subprocesses of pid=3036293
[2025-12-14 07:28:03] 2025-12-14 12:27:31,377 | INFO     | process IDs to be killed: [3036293] (in reverse order)
[2025-12-14 07:28:03] 2025-12-14 12:27:31,485 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 07:28:03] 2025-12-14 12:27:31,485 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 07:28:03] 2025-12-14 12:27:31,501 | INFO     | did not find any defunct processes belonging to 3036293
[2025-12-14 07:28:03] 2025-12-14 12:27:31,517 | INFO     | did not find any defunct processes belonging to 3036293
[2025-12-14 07:28:03] 2025-12-14 12:27:31,518 | INFO     | ready for new job
[2025-12-14 07:28:03] 2025-12-14 12:27:31,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 07:28:03] 2025-12-14 12:27:31,525 | INFO     | ***************************************
[2025-12-14 07:28:03] 2025-12-14 12:27:31,525 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 07:28:03] 2025-12-14 12:27:31,525 | INFO     | ***************************************
[2025-12-14 07:28:03] 2025-12-14 12:27:31,525 | INFO     | 
[2025-12-14 07:28:03] 2025-12-14 12:27:31,532 | INFO     | architecture information:
[2025-12-14 07:28:03] 2025-12-14 12:27:31,533 | INFO     | executing command: cat /etc/os-release
[2025-12-14 07:28:03] 2025-12-14 12:27:31,701 | INFO     | cat /etc/os-release:
[2025-12-14 07:28:03] NAME="CentOS Linux"
[2025-12-14 07:28:03] VERSION="7 (Core)"
[2025-12-14 07:28:03] ID="centos"
[2025-12-14 07:28:03] ID_LIKE="rhel fedora"
[2025-12-14 07:28:03] VERSION_ID="7"
[2025-12-14 07:28:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 07:28:03] ANSI_COLOR="0;31"
[2025-12-14 07:28:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 07:28:03] HOME_URL="https://www.centos.org/"
[2025-12-14 07:28:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 07:28:03] 
[2025-12-14 07:28:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 07:28:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 07:28:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 07:28:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 07:28:03] 
[2025-12-14 07:28:03] 2025-12-14 12:27:31,702 | INFO     | ***************************************
[2025-12-14 07:28:03] 2025-12-14 12:27:32,205 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-14 07:28:03] 2025-12-14 12:27:32,434 | INFO     | sufficient remaining disk space (74852597760 B)
[2025-12-14 07:28:03] 2025-12-14 12:27:32,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 07:28:03] 2025-12-14 12:27:32,434 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 07:28:03] 2025-12-14 12:27:32,434 | INFO     | update_server=False
[2025-12-14 07:28:03] 2025-12-14 12:27:32,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 07:28:03] 2025-12-14 12:27:32,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:28:03] 2025-12-14 12:27:32,435 | INFO     | aborting loop
[2025-12-14 07:28:03] 2025-12-14 12:27:32,973 | INFO     | all data control threads have been joined
[2025-12-14 07:28:03] 2025-12-14 12:27:33,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 07:28:03] 2025-12-14 12:27:33,340 | INFO     | all payload control threads have been joined
[2025-12-14 07:28:03] 2025-12-14 12:27:33,440 | INFO     | [job] retrieve thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:33,441 | INFO     | [job] job monitor thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:33,741 | INFO     | all job control threads have been joined
[2025-12-14 07:28:03] 2025-12-14 12:27:33,979 | INFO     | [data] control thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,283 | INFO     | [data] copytool_in thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,374 | INFO     | [payload] control thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,405 | INFO     | [job] validate thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,416 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,417 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,418 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,634 | INFO     | [payload] validate_post thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,634 | INFO     | [payload] failed_post thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,747 | INFO     | [job] control thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,849 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:34,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:28:03] 2025-12-14 12:27:35,019 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 07:28:03] 2025-12-14 12:27:35,218 | INFO     | [data] copytool_out thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:35,900 | INFO     | [job] queue monitor thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:37,787 [wrapper] supervise_pilot (15 min periods counter: 30)
[2025-12-14 07:28:03] 2025-12-14 12:27:38,915 | INFO     | [monitor] cgroup control has ended
[2025-12-14 07:28:03] 2025-12-14 12:27:39,054 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 07:28:03] 2025-12-14 12:27:39,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492775405376)>', '<ExcThread(monitor, started 140492046059264)>']
[2025-12-14 07:28:03] 2025-12-14 12:27:44,978 | INFO     | all workflow threads have been joined
[2025-12-14 07:28:03] 2025-12-14 12:27:44,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 07:28:03] 2025-12-14 12:27:44,979 | INFO     | traces error code: 0
[2025-12-14 07:28:03] 2025-12-14 12:27:44,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 07:28:03] 2025-12-14 12:28:02,115 | INFO     | PID=3021534 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 07:28:03] 2025-12-14 12:28:02,116 | INFO     | .. there are 9 such processes running
[2025-12-14 07:28:03] 2025-12-14 12:28:02,116 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 07:28:03] 2025-12-14 12:28:02,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 07:28:03] 2025-12-14 12:28:02,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 07:28:03] 2025-12-14 12:28:02,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 07:28:03] 2025-12-14 12:28:02,116 | CRITICAL | thread 'MainThread' is not alive
[2025-12-14 07:28:03] 2025-12-14 12:28:02,117 | INFO     | [monitor] control thread has ended
[2025-12-14 07:28:03] 2025-12-14 12:28:02,258 [wrapper] ==== pilot stdout END ====
[2025-12-14 07:28:03] 2025-12-14 12:28:02,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 07:28:03] 2025-12-14 12:28:02,263 [wrapper] pilotpid: 3021534
[2025-12-14 07:28:03] 2025-12-14 12:28:02,265 [wrapper] Pilot exit status: 0
[2025-12-14 07:28:03] 2025-12-14 12:28:02,379 [wrapper] pandaids: 6929716003
[2025-12-14 07:28:03] 2025-12-14 12:28:02,687 [wrapper] cleanup supervisor_pilot 3817396 3021535
[2025-12-14 07:28:03] 2025-12-14 12:28:02,720 [wrapper] Test setup, not cleaning
[2025-12-14 07:28:03] 2025-12-14 12:28:02,724 [wrapper] apfmon messages muted
[2025-12-14 07:28:03] 2025-12-14 12:28:02,727 [wrapper] ==== wrapper stdout END ====
[2025-12-14 07:28:03] 2025-12-14 12:28:02,730 [wrapper] ==== wrapper stderr END ====
[2025-12-14 07:28:03]  *** Error codes and diagnostics ***
[2025-12-14 07:28:03]     "exeErrorCode": 0,
[2025-12-14 07:28:03]     "exeErrorDiag": "",
[2025-12-14 07:28:03]     "pilotErrorCode": 0,
[2025-12-14 07:28:03]     "pilotErrorDiag": "",
[2025-12-14 07:28:03]  *** Listing of results directory ***
[2025-12-14 07:28:03] total 383552
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 16:19 pilot3.tar.gz
[2025-12-14 07:28:03] -rwx------. 1 boincer umatlas     36322 Dec 13 16:22 runpilot2-wrapper.sh
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 16:25 queuedata.json
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas       100 Dec 14 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 07:28:03] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 00:11 run_atlas
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas       105 Dec 14 00:11 job.xml
[2025-12-14 07:28:03] -rw-r--r--. 2 boincer umatlas 196285979 Dec 14 00:11 EVNT.47899040._000091.pool.root.1
[2025-12-14 07:28:03] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 00:11 start_atlas.sh
[2025-12-14 07:28:03] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 00:11 shared
[2025-12-14 07:28:03] -rw-r--r--. 2 boincer umatlas    592388 Dec 14 00:11 input.tar.gz
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas         0 Dec 14 00:11 boinc_lockfile
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas      2492 Dec 14 00:11 pandaJob.out
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas        57 Dec 14 00:11 setup.sh.local
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas    991728 Dec 14 00:12 agis_schedconf.cvmfs.json
[2025-12-14 07:28:03] drwx------. 5 boincer umatlas      4096 Dec 14 00:12 pilot3
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas      6843 Dec 14 07:19 init_data.xml
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas 184620990 Dec 14 07:24 HITS.47899042._001760.pool.root.1
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas       531 Dec 14 07:24 boinc_task_state.xml
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas      1041 Dec 14 07:26 memory_monitor_summary.json
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas   1516240 Dec 14 07:26 agis_ddmendpoints.agis.ALL.json
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas    621602 Dec 14 07:26 log.47899042._001760.job.log.tgz.1
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas        95 Dec 14 07:27 pilot_heartbeat.json
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas      7816 Dec 14 07:27 heartbeat.json
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas        28 Dec 14 07:28 wrapper_checkpoint.txt
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 07:28 boinc_mmap_file
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas       892 Dec 14 07:28 pilotlog.txt
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas   3343569 Dec 14 07:28 log.47899042._001760.job.log.1
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas       357 Dec 14 07:28 output.list
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas       620 Dec 14 07:28 runtime_log
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas   3983360 Dec 14 07:28 result.tar.gz
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas      9353 Dec 14 07:28 runtime_log.err
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas       658 Dec 14 07:28 D64NDmvFmo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2RUKDmPTyWHm.diag
[2025-12-14 07:28:03] -rw-r--r--. 1 boincer umatlas     21181 Dec 14 07:28 stderr.txt
[2025-12-14 07:28:03] HITS file was successfully produced:
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas 184620990 Dec 14 07:24 shared/HITS.pool.root.1
[2025-12-14 07:28:03]  *** Contents of shared directory: ***
[2025-12-14 07:28:03] total 376480
[2025-12-14 07:28:03] -rw-r--r--. 2 boincer umatlas 196285979 Dec 14 00:11 ATLAS.root_0
[2025-12-14 07:28:03] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 00:11 start_atlas.sh
[2025-12-14 07:28:03] -rw-r--r--. 2 boincer umatlas    592388 Dec 14 00:11 input.tar.gz
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas 184620990 Dec 14 07:24 HITS.pool.root.1
[2025-12-14 07:28:03] -rw-------. 1 boincer umatlas   3983360 Dec 14 07:28 result.tar.gz
07:28:05 (3012973): run_atlas exited; CPU time 41063.233811
07:28:05 (3012973): called boinc_finish(0)

</stderr_txt>
]]>

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