Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:12:34 (1226257): wrapper (7.7.26015): starting
21:12:34 (1226257): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 21:12:34] Arguments: --nthreads 12
[2025-12-13 21:12:34] Threads: 12
[2025-12-13 21:12:34] Checking for CVMFS
[2025-12-13 21:12:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 21:12:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 21:12:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 21:12:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 21:12:35] 2.11.5.0 2587603 18675 309476 153984 2 763 40334335 45568001 18277 130560 0 108502569 99.715 83602886 17923 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-13 21:12:35] CVMFS is ok
[2025-12-13 21:12:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 21:12:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 21:12:35] Further information can be found at the LHC@home message board.
[2025-12-13 21:12:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 21:12:35] Checking for apptainer binary...
[2025-12-13 21:12:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 21:12:35] Running /usr/bin/apptainer --version
[2025-12-13 21:12:35] apptainer version 1.4.1-1.el9
[2025-12-13 21:12:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 21:12:36] wns0056.triumf.lcg
[2025-12-13 21:12:36] apptainer works
[2025-12-13 21:12:36] Set ATHENA_PROC_NUMBER=12
[2025-12-13 21:12:36] Set ATHENA_CORE_NUMBER=12
[2025-12-13 21:12:36] Starting ATLAS job with PandaID=6929719275
[2025-12-13 21:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 21:19:19]  *** The last 200 lines of the pilot log: ***
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | WARNING  | wrong length of table data, x=[1765689289.0], y=[2691.0] (must be same and length>=4)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | could have reported an average CPU frequency of 2608 MHz (4 samples)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | ..............................
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . Timing measurements:
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . get job = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . initial setup = 6 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . payload setup = 33 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . stage-in = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . payload execution = 76 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . stage-out = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . log creation = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | ..............................
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 21:19:19] 2025-12-14 05:18:11,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929719275/pilotlog.txt
[2025-12-13 21:19:19] 2025-12-14 05:18:11,633 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-13 21:19:19] - Log from pilotlog.txt -
[2025-12-13 21:19:19] 2025-12-14 05:18:11,517 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929719275/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | INFO     | extracted standard info from prmon json
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | WARNING  | wrong length of table data, x=[1765689289.0], y=[2691.0] (must be same and length>=4)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | could have reported an average CPU frequency of 2608 MHz (4 samples)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | ..............................
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . Timing measurements:
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . get job = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . initial setup = 6 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . payload setup = 33 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . stage-in = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . payload execution = 76 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . stage-out = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . log creation = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | ..............................
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 21:19:19] 2025-12-14 05:18:11,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929719275/pilotlog.txt
[2025-12-13 21:19:19] 2025-12-14 05:18:11,633 | WARNING  | 
[2025-12-13 21:19:19] [begin log extracts]
[2025-12-13 21:19:19] - Log from pilotlog.txt -
[2025-12-13 21:19:19] 2025-12-14 05:18:11,517 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929719275/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | INFO     | extracted standard info from prmon json
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 21:19:19] 2025-12-14 05:18:11,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | WARNING  | wrong length of table data, x=[1765689289.0], y=[2691.0] (must be same and length>=4)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | could have reported an average CPU frequency of 2608 MHz (4 samples)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | ..............................
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . Timing measurements:
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . get job = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . initial setup = 6 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . payload setup = 33 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . stage-in = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . payload execution = 76 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . stage-out = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | . log creation = 0 s
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | ..............................
[2025-12-13 21:19:19] 2025-12-14 05:18:11,532 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 21:19:19] 2025-12-14 05:18:11,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929719275/pilotlog.txt
[2025-12-13 21:19:19] [end log extracts]
[2025-12-13 21:19:19] 2025-12-14 05:18:11,634 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-13 21:19:19] 2025-12-14 05:18:11,634 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-13 21:19:19] 2025-12-14 05:18:11,888 | INFO     | PID=1230062 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 21:19:19] 2025-12-14 05:18:11,888 | INFO     | .. there are 42 such processes running
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | 
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | job summary report
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | --------------------------------------------------
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | PanDA job id: 6929719275
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | task id: 47899042
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-13 21:15:35,512 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | pilot state: failed 
[2025-12-13 21:19:19] 2025-12-14 05:18:12,102 | INFO     | transexitcode: 65
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | exeerrorcode: 65
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | exitcode: 65
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | cpuconsumptiontime: 18 s
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | nevents: 0
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | neventsw: 0
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | pid: 1236987
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | pgrp: 1236987
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | corecount: 12
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | event service: False
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | sizes: {0: 2283704, 1: 2283959, 2: 2283959, 13: 2283987, 20: 2284305, 24: 2284333, 115: 2307780, 117: 2312072, 118: 2312100, 261: 2312294}
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | --------------------------------------------------
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | 
[2025-12-13 21:19:19] 2025-12-14 05:18:12,103 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | job 6929719275 has completed (purged errors)
[2025-12-13 21:19:19] 2025-12-14 05:18:12,248 | INFO     | overall cleanup function is called
[2025-12-13 21:19:19] 2025-12-14 05:18:13,256 | INFO     | --- collectZombieJob: --- 10, [1236987]
[2025-12-13 21:19:19] 2025-12-14 05:18:13,257 | INFO     | zombie collector waiting for pid 1236987
[2025-12-13 21:19:19] 2025-12-14 05:18:13,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 21:19:19] 2025-12-14 05:18:13,257 | INFO     | collected zombie processes
[2025-12-13 21:19:19] 2025-12-14 05:18:13,257 | INFO     | will attempt to kill all subprocesses of pid=1236987
[2025-12-13 21:19:19] 2025-12-14 05:18:13,697 | INFO     | process IDs to be killed: [1236987] (in reverse order)
[2025-12-13 21:19:19] 2025-12-14 05:18:14,157 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 21:19:19] 2025-12-14 05:18:14,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 21:19:19] 2025-12-14 05:18:14,230 | INFO     | did not find any defunct processes belonging to 1236987
[2025-12-13 21:19:19] 2025-12-14 05:18:14,267 | INFO     | did not find any defunct processes belonging to 1236987
[2025-12-13 21:19:19] 2025-12-14 05:18:14,267 | INFO     | ready for new job
[2025-12-13 21:19:19] 2025-12-14 05:18:14,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 21:19:19] 2025-12-14 05:18:14,287 | INFO     | ***************************************
[2025-12-13 21:19:19] 2025-12-14 05:18:14,288 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 21:19:19] 2025-12-14 05:18:14,288 | INFO     | ***************************************
[2025-12-13 21:19:19] 2025-12-14 05:18:14,288 | INFO     | 
[2025-12-13 21:19:19] 2025-12-14 05:18:14,290 | INFO     | architecture information:
[2025-12-13 21:19:19] 2025-12-14 05:18:14,290 | INFO     | executing command: cat /etc/os-release
[2025-12-13 21:19:19] 2025-12-14 05:18:14,305 | INFO     | cat /etc/os-release:
[2025-12-13 21:19:19] NAME="CentOS Linux"
[2025-12-13 21:19:19] VERSION="7 (Core)"
[2025-12-13 21:19:19] ID="centos"
[2025-12-13 21:19:19] ID_LIKE="rhel fedora"
[2025-12-13 21:19:19] VERSION_ID="7"
[2025-12-13 21:19:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 21:19:19] ANSI_COLOR="0;31"
[2025-12-13 21:19:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 21:19:19] HOME_URL="https://www.centos.org/"
[2025-12-13 21:19:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 21:19:19] 
[2025-12-13 21:19:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 21:19:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 21:19:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 21:19:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 21:19:19] 
[2025-12-13 21:19:19] 2025-12-14 05:18:14,305 | INFO     | ***************************************
[2025-12-13 21:19:19] 2025-12-14 05:18:14,822 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-13 21:19:19] 2025-12-14 05:18:14,851 | INFO     | sufficient remaining disk space (2034619121664 B)
[2025-12-13 21:19:19] 2025-12-14 05:18:14,851 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 21:19:19] 2025-12-14 05:18:14,851 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 21:19:19] 2025-12-14 05:18:14,851 | INFO     | update_server=False
[2025-12-13 21:19:19] 2025-12-14 05:18:14,851 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 21:19:19] 2025-12-14 05:18:14,852 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 21:19:19] 2025-12-14 05:18:14,852 | INFO     | aborting loop
[2025-12-13 21:19:19] 2025-12-14 05:18:14,852 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 21:19:19] 2025-12-14 05:18:14,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 21:19:19] 2025-12-14 05:18:15,266 | INFO     | all payload control threads have been joined
[2025-12-13 21:19:19] 2025-12-14 05:18:15,520 | INFO     | all job control threads have been joined
[2025-12-13 21:19:19] 2025-12-14 05:18:15,629 | INFO     | all data control threads have been joined
[2025-12-13 21:19:19] 2025-12-14 05:18:15,857 | INFO     | [job] retrieve thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:15,858 | INFO     | [job] job monitor thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:15,937 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,007 | INFO     | [job] validate thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,079 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,273 | INFO     | [payload] control thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,323 | INFO     | [payload] validate_post thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,459 | INFO     | [data] copytool_in thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,526 | INFO     | [job] control thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,635 | INFO     | [data] control thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,717 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,858 | INFO     | [data] copytool_out thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,938 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:16,945 | INFO     | [payload] failed_post thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:17,110 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 21:19:19] 2025-12-14 05:18:18,116 | INFO     | [job] queue monitor thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:18,925 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 21:19:19] 2025-12-14 05:18:44,310 | INFO     | PID=1230062 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 21:19:19] 2025-12-14 05:18:44,310 | INFO     | .. there are 42 such processes running
[2025-12-13 21:19:19] 2025-12-14 05:18:44,310 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 21:19:19] 2025-12-14 05:18:44,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 21:19:19] 2025-12-14 05:18:44,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 21:19:19] 2025-12-14 05:19:13,148 | INFO     | [monitor] cgroup control has ended
[2025-12-13 21:19:19] 2025-12-14 05:19:13,237 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140277637437248)>', '<ExcThread(monitor, started 140276953757440)>']
[2025-12-13 21:19:19] 2025-12-14 05:19:13,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 21:19:19] 2025-12-14 05:19:13,499 | INFO     | [monitor] control thread has ended
[2025-12-13 21:19:19] 2025-12-14 05:19:18,263 | INFO     | all workflow threads have been joined
[2025-12-13 21:19:19] 2025-12-14 05:19:18,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 21:19:19] 2025-12-14 05:19:18,264 | INFO     | traces error code: 0
[2025-12-13 21:19:19] 2025-12-14 05:19:18,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 21:19:19] 2025-12-14 05:19:18,647 [wrapper] ==== pilot stdout END ====
[2025-12-13 21:19:19] 2025-12-14 05:19:18,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 21:19:19] 2025-12-14 05:19:18,680 [wrapper] pilotpid: 1230062
[2025-12-13 21:19:19] 2025-12-14 05:19:18,696 [wrapper] Pilot exit status: 0
[2025-12-13 21:19:19] 2025-12-14 05:19:18,753 [wrapper] pandaids: 6929719275
[2025-12-13 21:19:19] 2025-12-14 05:19:18,828 [wrapper] cleanup supervisor_pilot 1230068 1230063
[2025-12-13 21:19:19] 2025-12-14 05:19:18,843 [wrapper] Test setup, not cleaning
[2025-12-13 21:19:19] 2025-12-14 05:19:18,881 [wrapper] apfmon messages muted
[2025-12-13 21:19:19] 2025-12-14 05:19:18,902 [wrapper] ==== wrapper stdout END ====
[2025-12-13 21:19:19] 2025-12-14 05:19:18,948 [wrapper] ==== wrapper stderr END ====
[2025-12-13 21:19:19]  *** Error codes and diagnostics ***
[2025-12-13 21:19:19]     "exeErrorCode": 65,
[2025-12-13 21:19:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 21:19:19]     "pilotErrorCode": 1305,
[2025-12-13 21:19:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 21:19:19]  *** Listing of results directory ***
[2025-12-13 21:19:19] total 196604
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc    579449 Dec 13 13:19 pilot3.tar.gz
[2025-12-13 21:19:19] -rwx------. 1 boinc boinc     36322 Dec 13 13:22 runpilot2-wrapper.sh
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc      5112 Dec 13 13:25 queuedata.json
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc       100 Dec 13 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 21:19:19] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 21:12 run_atlas
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc       105 Dec 13 21:12 job.xml
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc      6595 Dec 13 21:12 init_data.xml
[2025-12-13 21:19:19] -rw-r--r--. 2 boinc boinc 197165612 Dec 13 21:12 EVNT.47899040._000110.pool.root.1
[2025-12-13 21:19:19] -rw-r--r--. 2 boinc boinc     15847 Dec 13 21:12 start_atlas.sh
[2025-12-13 21:19:19] drwxrwx--x. 2 boinc boinc      4096 Dec 13 21:12 shared
[2025-12-13 21:19:19] -rw-r--r--. 2 boinc boinc    592390 Dec 13 21:12 input.tar.gz
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc         0 Dec 13 21:12 boinc_lockfile
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc      2491 Dec 13 21:12 pandaJob.out
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc    991728 Dec 13 21:13 agis_schedconf.cvmfs.json
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc   1516240 Dec 13 21:13 agis_ddmendpoints.agis.ALL.json
[2025-12-13 21:19:19] drwx------. 5 boinc boinc      4096 Dec 13 21:13 pilot3
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc       524 Dec 13 21:15 boinc_task_state.xml
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc       971 Dec 13 21:15 memory_monitor_summary.json
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc     22388 Dec 13 21:15 log.47899042._002231.job.log.tgz.1
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc      8415 Dec 13 21:18 heartbeat.json
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc        95 Dec 13 21:18 pilot_heartbeat.json
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc      8192 Dec 13 21:19 boinc_mmap_file
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc        23 Dec 13 21:19 wrapper_checkpoint.txt
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc      4823 Dec 13 21:19 pilotlog.txt
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc     97711 Dec 13 21:19 log.47899042._002231.job.log.1
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc       188 Dec 13 21:19 output.list
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc       620 Dec 13 21:19 runtime_log
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc    143360 Dec 13 21:19 result.tar.gz
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc      8636 Dec 13 21:19 runtime_log.err
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc       647 Dec 13 21:19 32cKDm2Fmo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbJQKDmtnwvQm.diag
[2025-12-13 21:19:19] -rw-r--r--. 1 boinc boinc     21485 Dec 13 21:19 stderr.txt
[2025-12-13 21:19:19] No HITS result produced
[2025-12-13 21:19:19]  *** Contents of shared directory: ***
[2025-12-13 21:19:19] total 193284
[2025-12-13 21:19:19] -rw-r--r--. 2 boinc boinc 197165612 Dec 13 21:12 ATLAS.root_0
[2025-12-13 21:19:19] -rw-r--r--. 2 boinc boinc     15847 Dec 13 21:12 start_atlas.sh
[2025-12-13 21:19:19] -rw-r--r--. 2 boinc boinc    592390 Dec 13 21:12 input.tar.gz
[2025-12-13 21:19:19] -rw-------. 1 boinc boinc    143360 Dec 13 21:19 result.tar.gz
21:19:21 (1226257): run_atlas exited; CPU time 29.545849
21:19:21 (1226257): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN