Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:39 (2327): wrapper (7.7.26015): starting
00:00:39 (2327): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 00:00:39] Arguments: --nthreads 12
[2025-12-14 00:00:39] Threads: 12
[2025-12-14 00:00:39] Checking for CVMFS
[2025-12-14 00:00:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 00:00:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 00:00:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 00:00:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 00:00:40] 2.11.2.0 2925 313154 96668 153984 0 57 16597987 20275201 1 130560 1 138647282 99.967 18189749 15178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 00:00:40] CVMFS is ok
[2025-12-14 00:00:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:00:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:00:40] Further information can be found at the LHC@home message board.
[2025-12-14 00:00:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:00:40] Checking for apptainer binary...
[2025-12-14 00:00:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 00:00:40] Running /usr/bin/apptainer --version
[2025-12-14 00:00:40] apptainer version 1.3.2-1.el7
[2025-12-14 00:00:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:00:41] c-205-9.aglt2.org
[2025-12-14 00:00:41] apptainer works
[2025-12-14 00:00:41] Set ATHENA_PROC_NUMBER=12
[2025-12-14 00:00:41] Set ATHENA_CORE_NUMBER=12
[2025-12-14 00:00:41] Starting ATLAS job with PandaID=6929714553
[2025-12-14 00:00:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 01:13:26]  *** The last 200 lines of the pilot log: ***
[2025-12-14 01:13:26]  mtime=0
[2025-12-14 01:13:26]  protocol_id=None
[2025-12-14 01:13:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-14 01:13:26]  replicas=None
[2025-12-14 01:13:26]  scope=mc23_13p6TeV
[2025-12-14 01:13:26]  status=None
[2025-12-14 01:13:26]  status_code=0
[2025-12-14 01:13:26]  storage_token=
[2025-12-14 01:13:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929714553/log.47899042._001669.job.log.tgz.1
[2025-12-14 01:13:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/34/log.47899042._001669.job.log.tgz.1
[2025-12-14 01:13:26]  workdir=None
[2025-12-14 01:13:26] ]
[2025-12-14 01:13:26] 2025-12-14 06:12:46,403 | INFO     | transferring file log.47899042._001669.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929714553/log.47899042._001669.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-14 01:13:26] 2025-12-14 06:12:46,403 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929714553/log.47899042._001669.job.log.tgz.1 /tmp/boinchome/slots/0/log.47899042._001669.job
[2025-12-14 01:13:26] 2025-12-14 06:12:46,426 | INFO     | adding to output.list: log.47899042._001669.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c4/34/log.47899042._001669.job.log.tg
[2025-12-14 01:13:26] 2025-12-14 06:12:46,427 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-14 01:13:26] 2025-12-14 06:12:46,427 | INFO     | summary of transferred files:
[2025-12-14 01:13:26] 2025-12-14 06:12:46,428 | INFO     |  -- lfn=log.47899042._001669.job.log.tgz.1, status_code=0, status=transferred
[2025-12-14 01:13:26] 2025-12-14 06:12:46,428 | INFO     | stage-out finished correctly
[2025-12-14 01:13:26] 2025-12-14 06:12:47,258 | INFO     | monitor loop #323: job 0:6929714553 is in state 'finished'
[2025-12-14 01:13:26] 2025-12-14 06:12:47,298 | INFO     | time since job start (4309s) is within the limit (174528.0s)
[2025-12-14 01:13:26] 2025-12-14 06:12:47,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 01:13:26] 2025-12-14 06:12:47,491 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-14 01:13:26] 2025-12-14 06:12:48,508 | INFO     | job 6929714553 has state=finished
[2025-12-14 01:13:26] 2025-12-14 06:12:48,508 | INFO     | preparing for final server update for job 6929714553 in state='finished'
[2025-12-14 01:13:26] 2025-12-14 06:12:48,509 | INFO     | this job has now completed (state=finished)
[2025-12-14 01:13:26] 2025-12-14 06:12:48,509 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-14 01:13:26] 2025-12-14 06:12:48,509 | INFO     | log transfer has been attempted: DONE
[2025-12-14 01:13:26] 2025-12-14 06:12:48,509 | INFO     | job 6929714553 has finished - writing final server update
[2025-12-14 01:13:26] 2025-12-14 06:12:48,509 | INFO     | total number of processed events: 400 (read)
[2025-12-14 01:13:26] 2025-12-14 06:12:48,510 | INFO     | executing command: lscpu
[2025-12-14 01:13:26] 2025-12-14 06:12:48,536 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 01:13:26] 2025-12-14 06:12:49,389 | INFO     | time since job start (4311s) is within the limit (174528.0s)
[2025-12-14 01:13:26] 2025-12-14 06:12:49,886 | INFO     | monitor loop #324: job 0:6929714553 is in state 'finished'
[2025-12-14 01:13:26] 2025-12-14 06:12:49,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 01:13:26] 2025-12-14 06:12:51,395 | INFO     | time since job start (4313s) is within the limit (174528.0s)
[2025-12-14 01:13:26] 2025-12-14 06:12:52,389 | INFO     | monitor loop #325: job 0:6929714553 is in state 'finished'
[2025-12-14 01:13:26] 2025-12-14 06:12:52,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 01:13:26] 2025-12-14 06:12:53,400 | INFO     | time since job start (4315s) is within the limit (174528.0s)
[2025-12-14 01:13:26] 2025-12-14 06:12:54,577 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-14 01:13:26] 2025-12-14 06:12:54,581 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-14 01:13:26] 2025-12-14 06:12:54,583 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929714553/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 01:13:26] 2025-12-14 06:12:54,584 | INFO     | extracted standard info from prmon json
[2025-12-14 01:13:26] 2025-12-14 06:12:54,584 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 01:13:26] 2025-12-14 06:12:54,584 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 01:13:26] 2025-12-14 06:12:54,584 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 01:13:26] 2025-12-14 06:12:54,584 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 01:13:26] 2025-12-14 06:12:54,586 | INFO     | fitting pss+swap vs Time
[2025-12-14 01:13:26] 2025-12-14 06:12:54,587 | INFO     | sum of square deviations: 81266640.0
[2025-12-14 01:13:26] 2025-12-14 06:12:54,587 | INFO     | sum of deviations: -3609734902.0
[2025-12-14 01:13:26] 2025-12-14 06:12:54,587 | INFO     | mean x: 1765690714.5
[2025-12-14 01:13:26] 2025-12-14 06:12:54,588 | INFO     | mean y: 2716194.8125
[2025-12-14 01:13:26] 2025-12-14 06:12:54,588 | INFO     | intersect: 78431889571.0954
[2025-12-14 01:13:26] 2025-12-14 06:12:54,588 | INFO     | chi2: 0.05172042437142359
[2025-12-14 01:13:26] 2025-12-14 06:12:54,588 | INFO     | current memory leak: -44.42 B/s (using 64 data points, chi2=0.05)
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | ..............................
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | . Timing measurements:
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | . get job = 0 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | . initial setup = 2 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | . payload setup = 7 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | . stage-in = 0 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,589 | INFO     | . payload execution = 4279 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,590 | INFO     | . stage-out = 0 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,590 | INFO     | . log creation = 0 s
[2025-12-14 01:13:26] 2025-12-14 06:12:54,590 | INFO     | ..............................
[2025-12-14 01:13:26] 2025-12-14 06:12:55,151 | INFO     | 
[2025-12-14 01:13:26] 2025-12-14 06:12:55,151 | INFO     | job summary report
[2025-12-14 01:13:26] 2025-12-14 06:12:55,151 | INFO     | --------------------------------------------------
[2025-12-14 01:13:26] 2025-12-14 06:12:55,151 | INFO     | PanDA job id: 6929714553
[2025-12-14 01:13:26] 2025-12-14 06:12:55,152 | INFO     | task id: 47899042
[2025-12-14 01:13:26] 2025-12-14 06:12:55,152 | INFO     | errors: (none)
[2025-12-14 01:13:26] 2025-12-14 06:12:55,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 01:13:26] 2025-12-14 06:12:55,152 | INFO     | pilot state: finished 
[2025-12-14 01:13:26] 2025-12-14 06:12:55,152 | INFO     | transexitcode: 0
[2025-12-14 01:13:26] 2025-12-14 06:12:55,152 | INFO     | exeerrorcode: 0
[2025-12-14 01:13:26] 2025-12-14 06:12:55,153 | INFO     | exeerrordiag: 
[2025-12-14 01:13:26] 2025-12-14 06:12:55,153 | INFO     | exitcode: 0
[2025-12-14 01:13:26] 2025-12-14 06:12:55,153 | INFO     | exitmsg: OK
[2025-12-14 01:13:26] 2025-12-14 06:12:55,153 | INFO     | cpuconsumptiontime: 45992 s
[2025-12-14 01:13:26] 2025-12-14 06:12:55,153 | INFO     | nevents: 400
[2025-12-14 01:13:26] 2025-12-14 06:12:55,153 | INFO     | neventsw: 0
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | pid: 12872
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | pgrp: 12872
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | corecount: 12
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | event service: False
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | sizes: {0: 2283934, 5: 2284196, 11: 2284252, 4289: 2310258, 4290: 2310257, 4292: 2319311, 4293: 2319495, 4300: 2319689}
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | --------------------------------------------------
[2025-12-14 01:13:26] 2025-12-14 06:12:55,154 | INFO     | 
[2025-12-14 01:13:26] 2025-12-14 06:12:55,155 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 01:13:26] 2025-12-14 06:12:55,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,178 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,178 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,179 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,179 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,179 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,179 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 01:13:26] 2025-12-14 06:12:55,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 01:13:26] 2025-12-14 06:12:55,181 | INFO     | job 6929714553 has completed (purged errors)
[2025-12-14 01:13:26] 2025-12-14 06:12:55,181 | INFO     | overall cleanup function is called
[2025-12-14 01:13:26] 2025-12-14 06:12:56,189 | INFO     | --- collectZombieJob: --- 10, [12872]
[2025-12-14 01:13:26] 2025-12-14 06:12:56,189 | INFO     | zombie collector waiting for pid 12872
[2025-12-14 01:13:26] 2025-12-14 06:12:56,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 01:13:26] 2025-12-14 06:12:56,190 | INFO     | collected zombie processes
[2025-12-14 01:13:26] 2025-12-14 06:12:56,190 | INFO     | will attempt to kill all subprocesses of pid=12872
[2025-12-14 01:13:26] 2025-12-14 06:12:56,279 | INFO     | process IDs to be killed: [12872] (in reverse order)
[2025-12-14 01:13:26] 2025-12-14 06:12:56,330 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 01:13:26] 2025-12-14 06:12:56,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 01:13:26] 2025-12-14 06:12:56,335 | INFO     | did not find any defunct processes belonging to 12872
[2025-12-14 01:13:26] 2025-12-14 06:12:56,338 | INFO     | did not find any defunct processes belonging to 12872
[2025-12-14 01:13:26] 2025-12-14 06:12:56,338 | INFO     | ready for new job
[2025-12-14 01:13:26] 2025-12-14 06:12:56,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 01:13:26] 2025-12-14 06:12:56,340 | INFO     | ***************************************
[2025-12-14 01:13:26] 2025-12-14 06:12:56,340 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 01:13:26] 2025-12-14 06:12:56,340 | INFO     | ***************************************
[2025-12-14 01:13:26] 2025-12-14 06:12:56,340 | INFO     | 
[2025-12-14 01:13:26] 2025-12-14 06:12:56,340 | INFO     | architecture information:
[2025-12-14 01:13:26] 2025-12-14 06:12:56,341 | INFO     | executing command: cat /etc/os-release
[2025-12-14 01:13:26] 2025-12-14 06:12:56,355 | INFO     | cat /etc/os-release:
[2025-12-14 01:13:26] NAME="CentOS Linux"
[2025-12-14 01:13:26] VERSION="7 (Core)"
[2025-12-14 01:13:26] ID="centos"
[2025-12-14 01:13:26] ID_LIKE="rhel fedora"
[2025-12-14 01:13:26] VERSION_ID="7"
[2025-12-14 01:13:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 01:13:26] ANSI_COLOR="0;31"
[2025-12-14 01:13:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 01:13:26] HOME_URL="https://www.centos.org/"
[2025-12-14 01:13:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 01:13:26] 
[2025-12-14 01:13:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 01:13:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 01:13:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 01:13:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 01:13:26] 
[2025-12-14 01:13:26] 2025-12-14 06:12:56,355 | INFO     | ***************************************
[2025-12-14 01:13:26] 2025-12-14 06:12:56,857 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 01:13:26] 2025-12-14 06:12:56,873 | INFO     | sufficient remaining disk space (29404168192 B)
[2025-12-14 01:13:26] 2025-12-14 06:12:56,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 01:13:26] 2025-12-14 06:12:56,874 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 01:13:26] 2025-12-14 06:12:56,874 | INFO     | update_server=False
[2025-12-14 01:13:26] 2025-12-14 06:12:56,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 01:13:26] 2025-12-14 06:12:56,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:13:26] 2025-12-14 06:12:56,875 | INFO     | aborting loop
[2025-12-14 01:13:26] 2025-12-14 06:12:56,937 | INFO     | all payload control threads have been joined
[2025-12-14 01:13:26] 2025-12-14 06:12:57,024 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 01:13:26] 2025-12-14 06:12:57,879 | INFO     | [job] job monitor thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:57,880 | INFO     | [job] retrieve thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:57,891 | INFO     | [payload] failed_post thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:57,936 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:57,942 | INFO     | [payload] control thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:57,955 | INFO     | all data control threads have been joined
[2025-12-14 01:13:26] 2025-12-14 06:12:58,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 01:13:26] 2025-12-14 06:12:58,208 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:58,335 | INFO     | all job control threads have been joined
[2025-12-14 01:13:26] 2025-12-14 06:12:58,462 | INFO     | [payload] validate_post thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:58,576 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:58,658 | INFO     | [data] copytool_in thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:58,899 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:58,960 | INFO     | [data] control thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:59,029 | INFO     | [data] copytool_out thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:59,216 | INFO     | [job] validate thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:59,340 | INFO     | [job] control thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:12:59,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:13:26] 2025-12-14 06:13:00,687 | INFO     | [job] queue monitor thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:13:02,085 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 01:13:26] 2025-12-14 06:13:04,740 | INFO     | [monitor] cgroup control has ended
[2025-12-14 01:13:26] 2025-12-14 06:13:05,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361299941184)>', '<ExcThread(monitor, started 140360722405120)>']
[2025-12-14 01:13:26] 2025-12-14 06:13:10,505 | INFO     | all workflow threads have been joined
[2025-12-14 01:13:26] 2025-12-14 06:13:10,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 01:13:26] 2025-12-14 06:13:10,505 | INFO     | traces error code: 0
[2025-12-14 01:13:26] 2025-12-14 06:13:10,506 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 01:13:26] 2025-12-14 06:13:26,602 | INFO     | PID=6415 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-14 01:13:26] 2025-12-14 06:13:26,602 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 01:13:26] 2025-12-14 06:13:26,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 01:13:26] 2025-12-14 06:13:26,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 01:13:26] 2025-12-14 06:13:26,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 01:13:26] 2025-12-14 06:13:26,603 | INFO     | [monitor] control thread has ended
[2025-12-14 01:13:26] 2025-12-14 06:13:26,689 [wrapper] ==== pilot stdout END ====
[2025-12-14 01:13:26] 2025-12-14 06:13:26,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 01:13:26] 2025-12-14 06:13:26,696 [wrapper] pilotpid: 6415
[2025-12-14 01:13:26] 2025-12-14 06:13:26,700 [wrapper] Pilot exit status: 0
[2025-12-14 01:13:26] 2025-12-14 06:13:26,715 [wrapper] pandaids: 6929714553
[2025-12-14 01:13:26] 2025-12-14 06:13:26,758 [wrapper] cleanup supervisor_pilot  4628 6416
[2025-12-14 01:13:26] 2025-12-14 06:13:26,762 [wrapper] Test setup, not cleaning
[2025-12-14 01:13:26] 2025-12-14 06:13:26,765 [wrapper] apfmon messages muted
[2025-12-14 01:13:26] 2025-12-14 06:13:26,770 [wrapper] ==== wrapper stdout END ====
[2025-12-14 01:13:26] 2025-12-14 06:13:26,774 [wrapper] ==== wrapper stderr END ====
[2025-12-14 01:13:26]  *** Error codes and diagnostics ***
[2025-12-14 01:13:26]     "exeErrorCode": 0,
[2025-12-14 01:13:26]     "exeErrorDiag": "",
[2025-12-14 01:13:26]     "pilotErrorCode": 0,
[2025-12-14 01:13:26]     "pilotErrorDiag": "",
[2025-12-14 01:13:26]  *** Listing of results directory ***
[2025-12-14 01:13:26] total 382184
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 16:19 pilot3.tar.gz
[2025-12-14 01:13:26] -rwx------ 1 boincer umatlas     36322 Dec 13 16:22 runpilot2-wrapper.sh
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 16:25 queuedata.json
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas       100 Dec 14 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 01:13:26] -rwxr-xr-x 1 boincer umatlas      7986 Dec 14 00:00 run_atlas
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas       105 Dec 14 00:00 job.xml
[2025-12-14 01:13:26] -rw-r--r-- 2 boincer umatlas 196906856 Dec 14 00:00 EVNT.47899040._000047.pool.root.1
[2025-12-14 01:13:26] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 00:00 start_atlas.sh
[2025-12-14 01:13:26] drwxrwx--x 2 boincer umatlas      4096 Dec 14 00:00 shared
[2025-12-14 01:13:26] -rw-r--r-- 2 boincer umatlas    592388 Dec 14 00:00 input.tar.gz
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas         0 Dec 14 00:00 boinc_lockfile
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas      2491 Dec 14 00:00 pandaJob.out
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas        57 Dec 14 00:00 setup.sh.local
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas    991728 Dec 14 00:00 agis_schedconf.cvmfs.json
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas   1516240 Dec 14 00:00 agis_ddmendpoints.agis.ALL.json
[2025-12-14 01:13:26] drwx------ 5 boincer umatlas      4096 Dec 14 00:00 pilot3
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas      5952 Dec 14 01:11 init_data.xml
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas 188495207 Dec 14 01:12 HITS.47899042._001669.pool.root.1
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas      1045 Dec 14 01:12 memory_monitor_summary.json
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas       530 Dec 14 01:12 boinc_task_state.xml
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas    389489 Dec 14 01:12 log.47899042._001669.job.log.tgz.1
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas        95 Dec 14 01:12 pilot_heartbeat.json
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas      7841 Dec 14 01:12 heartbeat.json
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas      8192 Dec 14 01:13 boinc_mmap_file
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas        27 Dec 14 01:13 wrapper_checkpoint.txt
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas       744 Dec 14 01:13 pilotlog.txt
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas    628210 Dec 14 01:13 log.47899042._001669.job.log.1
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas       357 Dec 14 01:13 output.list
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas       620 Dec 14 01:13 runtime_log
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas   1034240 Dec 14 01:13 result.tar.gz
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas      9339 Dec 14 01:13 runtime_log.err
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas       658 Dec 14 01:13 HnSNDmsFmo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlIQKDm8ozBhm.diag
[2025-12-14 01:13:26] -rw-r--r-- 1 boincer umatlas     21763 Dec 14 01:13 stderr.txt
[2025-12-14 01:13:26] HITS file was successfully produced:
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas 188495207 Dec 14 01:12 shared/HITS.pool.root.1
[2025-12-14 01:13:26]  *** Contents of shared directory: ***
[2025-12-14 01:13:26] total 377988
[2025-12-14 01:13:26] -rw-r--r-- 2 boincer umatlas 196906856 Dec 14 00:00 ATLAS.root_0
[2025-12-14 01:13:26] -rw-r--r-- 2 boincer umatlas     15847 Dec 14 00:00 start_atlas.sh
[2025-12-14 01:13:26] -rw-r--r-- 2 boincer umatlas    592388 Dec 14 00:00 input.tar.gz
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas 188495207 Dec 14 01:12 HITS.pool.root.1
[2025-12-14 01:13:26] -rw------- 1 boincer umatlas   1034240 Dec 14 01:13 result.tar.gz
01:13:28 (2327): run_atlas exited; CPU time 45977.628899
01:13:28 (2327): called boinc_finish(0)

</stderr_txt>
]]>

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