Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:34:38 (1657857): wrapper (7.7.26015): starting
11:34:38 (1657857): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 11:34:38] Arguments: --nthreads 8
[2025-12-14 11:34:38] Threads: 8
[2025-12-14 11:34:38] Checking for CVMFS
[2025-12-14 11:34:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 11:34:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 11:34:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 11:34:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 11:34:42] 2.13.2.0 3157737 56444 166024 154002 1 156 26024997 39288833 8850 16776704 0 49868999 99.648 44626371 38249 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-14 11:34:42] CVMFS is ok
[2025-12-14 11:34:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 11:34:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 11:34:42] Further information can be found at the LHC@home message board.
[2025-12-14 11:34:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 11:34:42] Checking for apptainer binary...
[2025-12-14 11:34:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 11:34:42] Running /usr/bin/apptainer --version
[2025-12-14 11:34:43] apptainer version 1.4.4-1.el9
[2025-12-14 11:35:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 11:35:04] c-210-20.aglt2.org
[2025-12-14 11:35:04] apptainer works
[2025-12-14 11:35:04] Set ATHENA_PROC_NUMBER=8
[2025-12-14 11:35:04] Set ATHENA_CORE_NUMBER=8
[2025-12-14 11:35:05] Starting ATLAS job with PandaID=6929526490
[2025-12-14 11:35:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 14:54:52]  *** The last 200 lines of the pilot log: ***
[2025-12-14 14:54:52] 2025-12-14 19:54:14,741 | INFO     | .. there are 7 such processes running
[2025-12-14 14:54:52] 2025-12-14 19:54:15,768 | INFO     | time since job start (11882s) is within the limit (174528.0s)
[2025-12-14 14:54:52] 2025-12-14 19:54:16,176 | INFO     | monitor loop #833: job 0:6929526490 is in state 'finished'
[2025-12-14 14:54:52] 2025-12-14 19:54:16,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 14:54:52] 2025-12-14 19:54:17,775 | INFO     | time since job start (11884s) is within the limit (174528.0s)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,669 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 14:54:52] 2025-12-14 19:54:18,680 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1796249999998
[2025-12-14 14:54:52] 2025-12-14 19:54:18,689 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929526490/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,692 | INFO     | extracted standard info from prmon json
[2025-12-14 14:54:52] 2025-12-14 19:54:18,692 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 14:54:52] 2025-12-14 19:54:18,692 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 14:54:52] 2025-12-14 19:54:18,693 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 14:54:52] 2025-12-14 19:54:18,693 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 14:54:52] 2025-12-14 19:54:18,759 | INFO     | monitor loop #834: job 0:6929526490 is in state 'finished'
[2025-12-14 14:54:52] 2025-12-14 19:54:18,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,762 | INFO     | fitting pss+swap vs Time
[2025-12-14 14:54:52] 2025-12-14 19:54:18,764 | INFO     | sum of square deviations: 2194482908.8698
[2025-12-14 14:54:52] 2025-12-14 19:54:18,766 | INFO     | sum of deviations: 4405992194.20314
[2025-12-14 14:54:52] 2025-12-14 19:54:18,766 | INFO     | mean x: 1765736199.6927083
[2025-12-14 14:54:52] 2025-12-14 19:54:18,767 | INFO     | mean y: 2523546.359375
[2025-12-14 14:54:52] 2025-12-14 19:54:18,767 | INFO     | intersect: -3542648704.2072716
[2025-12-14 14:54:52] 2025-12-14 19:54:18,767 | INFO     | chi2: 4.0515451507856195
[2025-12-14 14:54:52] 2025-12-14 19:54:18,768 | INFO     | sum of square deviations: 2027458503.6791458
[2025-12-14 14:54:52] 2025-12-14 19:54:18,769 | INFO     | sum of deviations: 16504282713.561497
[2025-12-14 14:54:52] 2025-12-14 19:54:18,769 | INFO     | mean x: 1765736047.197861
[2025-12-14 14:54:52] 2025-12-14 19:54:18,769 | INFO     | mean y: 2534359.9037433155
[2025-12-14 14:54:52] 2025-12-14 19:54:18,769 | INFO     | intersect: -14371228095.70109
[2025-12-14 14:54:52] 2025-12-14 19:54:18,770 | INFO     | chi2: 3.4043802488357087
[2025-12-14 14:54:52] 2025-12-14 19:54:18,770 | INFO     | current chi2=3.4043802488357087 (change=15.973286187478909 %)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,770 | INFO     | right removable region: 186
[2025-12-14 14:54:52] 2025-12-14 19:54:18,802 | INFO     | sum of square deviations: 2027447401.069522
[2025-12-14 14:54:52] 2025-12-14 19:54:18,803 | INFO     | sum of deviations: -47138109306.86095
[2025-12-14 14:54:52] 2025-12-14 19:54:18,803 | INFO     | mean x: 1765736352.1925135
[2025-12-14 14:54:52] 2025-12-14 19:54:18,803 | INFO     | mean y: 2570426.385026738
[2025-12-14 14:54:52] 2025-12-14 19:54:18,803 | INFO     | intersect: 41055903367.52135
[2025-12-14 14:54:52] 2025-12-14 19:54:18,804 | INFO     | chi2: 1.1843992602278837
[2025-12-14 14:54:52] 2025-12-14 19:54:18,804 | INFO     | current chi2=1.1843992602278837 (change=70.76672686226337 %)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,804 | INFO     | sum of square deviations: 1869121625.1483524
[2025-12-14 14:54:52] 2025-12-14 19:54:18,810 | INFO     | sum of deviations: -55926131283.81865
[2025-12-14 14:54:52] 2025-12-14 19:54:18,810 | INFO     | mean x: 1765736504.686813
[2025-12-14 14:54:52] 2025-12-14 19:54:18,810 | INFO     | mean y: 2578785.9505494507
[2025-12-14 14:54:52] 2025-12-14 19:54:18,810 | INFO     | intersect: 52835315963.18368
[2025-12-14 14:54:52] 2025-12-14 19:54:18,811 | INFO     | chi2: 1.001186406255133
[2025-12-14 14:54:52] 2025-12-14 19:54:18,811 | INFO     | current chi2=1.001186406255133 (change=15.468842317370218 %)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,811 | INFO     | left removable region: 20
[2025-12-14 14:54:52] 2025-12-14 19:54:18,811 | INFO     | sum of square deviations: 1418204559.7108388
[2025-12-14 14:54:52] 2025-12-14 19:54:18,812 | INFO     | sum of deviations: -35464150821.168655
[2025-12-14 14:54:52] 2025-12-14 19:54:18,812 | INFO     | mean x: 1765736626.686747
[2025-12-14 14:54:52] 2025-12-14 19:54:18,813 | INFO     | mean y: 2583764.1506024096
[2025-12-14 14:54:52] 2025-12-14 19:54:18,813 | INFO     | intersect: 44157250741.14029
[2025-12-14 14:54:52] 2025-12-14 19:54:18,817 | INFO     | chi2: 0.2777256751118699
[2025-12-14 14:54:52] 2025-12-14 19:54:18,818 | INFO     | current memory leak: -25.01 B/s (using 166 data points, chi2=0.28)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,818 | INFO     | could have reported an average CPU frequency of 2600 MHz (10 samples)
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | ..............................
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . Timing measurements:
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . get job = 0 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . initial setup = 8 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . payload setup = 64 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . stage-in = 0 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . payload execution = 11698 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . stage-out = 4 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,819 | INFO     | . log creation = 1 s
[2025-12-14 14:54:52] 2025-12-14 19:54:18,820 | INFO     | ..............................
[2025-12-14 14:54:52] 2025-12-14 19:54:19,002 | INFO     | 
[2025-12-14 14:54:52] 2025-12-14 19:54:19,002 | INFO     | job summary report
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | --------------------------------------------------
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | PanDA job id: 6929526490
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | task id: 47899042
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | errors: (none)
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | pilot state: finished 
[2025-12-14 14:54:52] 2025-12-14 19:54:19,003 | INFO     | transexitcode: 0
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | exeerrorcode: 0
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | exeerrordiag: 
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | exitcode: 0
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | exitmsg: OK
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | cpuconsumptiontime: 46380 s
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | nevents: 400
[2025-12-14 14:54:52] 2025-12-14 19:54:19,004 | INFO     | neventsw: 0
[2025-12-14 14:54:52] 2025-12-14 19:54:19,005 | INFO     | pid: 1672127
[2025-12-14 14:54:52] 2025-12-14 19:54:19,005 | INFO     | pgrp: 1672127
[2025-12-14 14:54:52] 2025-12-14 19:54:19,005 | INFO     | corecount: 8
[2025-12-14 14:54:52] 2025-12-14 19:54:19,005 | INFO     | event service: False
[2025-12-14 14:54:52] 2025-12-14 19:54:19,005 | INFO     | sizes: {0: 2283763, 1: 2283962, 13: 2283962, 26: 2284018, 37: 2264957, 38: 2284336, 48: 2284492, 11767: 2313961, 11773: 2322959, 11777: 2323015, 11796: 2323209}
[2025-12-14 14:54:52] 2025-12-14 19:54:19,005 | INFO     | --------------------------------------------------
[2025-12-14 14:54:52] 2025-12-14 19:54:19,006 | INFO     | 
[2025-12-14 14:54:52] 2025-12-14 19:54:19,006 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 14:54:52] 2025-12-14 19:54:19,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 14:54:52] 2025-12-14 19:54:19,036 | INFO     | job 6929526490 has completed (purged errors)
[2025-12-14 14:54:52] 2025-12-14 19:54:19,037 | INFO     | overall cleanup function is called
[2025-12-14 14:54:52] 2025-12-14 19:54:20,081 | INFO     | --- collectZombieJob: --- 10, [1672127]
[2025-12-14 14:54:52] 2025-12-14 19:54:20,081 | INFO     | zombie collector waiting for pid 1672127
[2025-12-14 14:54:52] 2025-12-14 19:54:20,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 14:54:52] 2025-12-14 19:54:20,082 | INFO     | collected zombie processes
[2025-12-14 14:54:52] 2025-12-14 19:54:20,082 | INFO     | will attempt to kill all subprocesses of pid=1672127
[2025-12-14 14:54:52] 2025-12-14 19:54:20,363 | INFO     | process IDs to be killed: [1672127] (in reverse order)
[2025-12-14 14:54:52] 2025-12-14 19:54:20,449 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 14:54:52] 2025-12-14 19:54:20,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 14:54:52] 2025-12-14 19:54:20,458 | INFO     | did not find any defunct processes belonging to 1672127
[2025-12-14 14:54:52] 2025-12-14 19:54:20,467 | INFO     | did not find any defunct processes belonging to 1672127
[2025-12-14 14:54:52] 2025-12-14 19:54:20,467 | INFO     | ready for new job
[2025-12-14 14:54:52] 2025-12-14 19:54:20,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 14:54:52] 2025-12-14 19:54:20,470 | INFO     | ***************************************
[2025-12-14 14:54:52] 2025-12-14 19:54:20,470 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 14:54:52] 2025-12-14 19:54:20,470 | INFO     | ***************************************
[2025-12-14 14:54:52] 2025-12-14 19:54:20,470 | INFO     | 
[2025-12-14 14:54:52] 2025-12-14 19:54:20,472 | INFO     | architecture information:
[2025-12-14 14:54:52] 2025-12-14 19:54:20,472 | INFO     | executing command: cat /etc/os-release
[2025-12-14 14:54:52] 2025-12-14 19:54:20,491 | INFO     | cat /etc/os-release:
[2025-12-14 14:54:52] NAME="CentOS Linux"
[2025-12-14 14:54:52] VERSION="7 (Core)"
[2025-12-14 14:54:52] ID="centos"
[2025-12-14 14:54:52] ID_LIKE="rhel fedora"
[2025-12-14 14:54:52] VERSION_ID="7"
[2025-12-14 14:54:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 14:54:52] ANSI_COLOR="0;31"
[2025-12-14 14:54:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 14:54:52] HOME_URL="https://www.centos.org/"
[2025-12-14 14:54:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 14:54:52] 
[2025-12-14 14:54:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 14:54:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 14:54:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 14:54:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 14:54:52] 
[2025-12-14 14:54:52] 2025-12-14 19:54:20,492 | INFO     | ***************************************
[2025-12-14 14:54:52] 2025-12-14 19:54:20,997 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 14:54:52] 2025-12-14 19:54:21,031 | INFO     | sufficient remaining disk space (53151268864 B)
[2025-12-14 14:54:52] 2025-12-14 19:54:21,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 14:54:52] 2025-12-14 19:54:21,032 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 14:54:52] 2025-12-14 19:54:21,032 | INFO     | update_server=False
[2025-12-14 14:54:52] 2025-12-14 19:54:21,033 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 14:54:52] 2025-12-14 19:54:21,264 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 14:54:52] 2025-12-14 19:54:21,264 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 14:54:52] 2025-12-14 19:54:21,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 14:54:52] 2025-12-14 19:54:21,265 | INFO     | will abort loop
[2025-12-14 14:54:52] 2025-12-14 19:54:21,291 | INFO     | all data control threads have been joined
[2025-12-14 14:54:52] 2025-12-14 19:54:21,335 | INFO     | all payload control threads have been joined
[2025-12-14 14:54:52] 2025-12-14 19:54:21,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 14:54:52] 2025-12-14 19:54:22,040 | INFO     | [job] retrieve thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:22,233 | INFO     | all job control threads have been joined
[2025-12-14 14:54:52] 2025-12-14 19:54:22,270 | INFO     | [job] job monitor thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:22,298 | INFO     | [data] control thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:22,341 | INFO     | [payload] control thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:22,517 | INFO     | [data] copytool_in thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:22,586 | INFO     | [payload] validate_post thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:22,888 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,151 | INFO     | [payload] failed_post thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,185 | INFO     | [job] validate thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,186 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,240 | INFO     | [job] control thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,309 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,321 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:23,822 | INFO     | [data] copytool_out thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:24,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 14:54:52] 2025-12-14 19:54:24,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 14:54:52] 2025-12-14 19:54:25,022 | INFO     | [job] queue monitor thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:28,100 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 14:54:52] 2025-12-14 19:54:34,278 | INFO     | [monitor] cgroup control has ended
[2025-12-14 14:54:52] 2025-12-14 19:54:34,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453645244224)>', '<ExcThread(monitor, started 140452997093120)>']
[2025-12-14 14:54:52] 2025-12-14 19:54:39,607 | INFO     | all workflow threads have been joined
[2025-12-14 14:54:52] 2025-12-14 19:54:39,607 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 14:54:52] 2025-12-14 19:54:39,608 | INFO     | traces error code: 0
[2025-12-14 14:54:52] 2025-12-14 19:54:39,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 14:54:52] 2025-12-14 19:54:51,198 | INFO     | PID=1662258 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 14:54:52] 2025-12-14 19:54:51,199 | INFO     | .. there are 7 such processes running
[2025-12-14 14:54:52] 2025-12-14 19:54:51,200 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 14:54:52] 2025-12-14 19:54:51,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 14:54:52] 2025-12-14 19:54:51,200 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 14:54:52] 2025-12-14 19:54:51,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 14:54:52] 2025-12-14 19:54:51,201 | INFO     | [monitor] control thread has ended
[2025-12-14 14:54:52] 2025-12-14 19:54:51,366 [wrapper] ==== pilot stdout END ====
[2025-12-14 14:54:52] 2025-12-14 19:54:51,409 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 14:54:52] 2025-12-14 19:54:51,424 [wrapper] pilotpid: 1662258
[2025-12-14 14:54:52] 2025-12-14 19:54:51,454 [wrapper] Pilot exit status: 0
[2025-12-14 14:54:52] 2025-12-14 19:54:51,576 [wrapper] pandaids: 6929526490
[2025-12-14 14:54:52] 2025-12-14 19:54:52,183 [wrapper] cleanup supervisor_pilot 1938955 1662259
[2025-12-14 14:54:52] 2025-12-14 19:54:52,214 [wrapper] Test setup, not cleaning
[2025-12-14 14:54:52] 2025-12-14 19:54:52,225 [wrapper] apfmon messages muted
[2025-12-14 14:54:52] 2025-12-14 19:54:52,256 [wrapper] ==== wrapper stdout END ====
[2025-12-14 14:54:52] 2025-12-14 19:54:52,283 [wrapper] ==== wrapper stderr END ====
[2025-12-14 14:54:52]  *** Error codes and diagnostics ***
[2025-12-14 14:54:52]     "exeErrorCode": 0,
[2025-12-14 14:54:52]     "exeErrorDiag": "",
[2025-12-14 14:54:52]     "pilotErrorCode": 0,
[2025-12-14 14:54:52]     "pilotErrorDiag": "",
[2025-12-14 14:54:52]  *** Listing of results directory ***
[2025-12-14 14:54:52] total 370704
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 16:19 pilot3.tar.gz
[2025-12-14 14:54:52] -rwx------. 1 boincer umatlas     36322 Dec 13 16:22 runpilot2-wrapper.sh
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 16:25 queuedata.json
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas       100 Dec 14 11:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 14:54:52] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 11:34 run_atlas
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas       105 Dec 14 11:34 job.xml
[2025-12-14 14:54:52] -rw-r--r--. 2 boincer umatlas 195818268 Dec 14 11:34 EVNT.47899040._000064.pool.root.1
[2025-12-14 14:54:52] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 11:34 start_atlas.sh
[2025-12-14 14:54:52] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 11:34 shared
[2025-12-14 14:54:52] -rw-r--r--. 2 boincer umatlas    592386 Dec 14 11:34 input.tar.gz
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas         0 Dec 14 11:34 boinc_lockfile
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas      2491 Dec 14 11:35 pandaJob.out
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas        57 Dec 14 11:35 setup.sh.local
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas    991024 Dec 14 11:36 agis_schedconf.cvmfs.json
[2025-12-14 14:54:52] drwx------. 5 boincer umatlas      4096 Dec 14 11:36 pilot3
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas      6660 Dec 14 14:49 init_data.xml
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas 175827149 Dec 14 14:53 HITS.47899042._001079.pool.root.1
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas       531 Dec 14 14:53 boinc_task_state.xml
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas      1046 Dec 14 14:53 memory_monitor_summary.json
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas   1516240 Dec 14 14:53 agis_ddmendpoints.agis.ALL.json
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas    415775 Dec 14 14:53 log.47899042._001079.job.log.tgz.1
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas      7830 Dec 14 14:54 heartbeat.json
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas        28 Dec 14 14:54 wrapper_checkpoint.txt
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 14:54 boinc_mmap_file
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas        95 Dec 14 14:54 pilot_heartbeat.json
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas       822 Dec 14 14:54 pilotlog.txt
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas   1606956 Dec 14 14:54 log.47899042._001079.job.log.1
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas       357 Dec 14 14:54 output.list
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas       620 Dec 14 14:54 runtime_log
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas   2037760 Dec 14 14:54 result.tar.gz
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas      9343 Dec 14 14:54 runtime_log.err
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas       655 Dec 14 14:54 Rs7LDmlFmo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhQUKDmOvVDdn.diag
[2025-12-14 14:54:52] -rw-r--r--. 1 boincer umatlas     21396 Dec 14 14:54 stderr.txt
[2025-12-14 14:54:52] HITS file was successfully produced:
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas 175827149 Dec 14 14:53 shared/HITS.pool.root.1
[2025-12-14 14:54:52]  *** Contents of shared directory: ***
[2025-12-14 14:54:52] total 365532
[2025-12-14 14:54:52] -rw-r--r--. 2 boincer umatlas 195818268 Dec 14 11:34 ATLAS.root_0
[2025-12-14 14:54:52] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 11:34 start_atlas.sh
[2025-12-14 14:54:52] -rw-r--r--. 2 boincer umatlas    592386 Dec 14 11:34 input.tar.gz
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas 175827149 Dec 14 14:53 HITS.pool.root.1
[2025-12-14 14:54:52] -rw-------. 1 boincer umatlas   2037760 Dec 14 14:54 result.tar.gz
14:54:54 (1657857): run_atlas exited; CPU time 46666.491893
14:54:54 (1657857): called boinc_finish(0)

</stderr_txt>
]]>

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