Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:06:49 (2767855): wrapper (7.7.26015): starting
16:06:49 (2767855): wrapper: running run_atlas (--nthreads 3)
[2025-12-14 16:06:49] Arguments: --nthreads 3
[2025-12-14 16:06:49] Threads: 3
[2025-12-14 16:06:49] Checking for CVMFS
[2025-12-14 16:06:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 16:06:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 16:06:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 16:06:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 16:06:50] 2.9.2.0 2238870 2070 78672 153999 1 56 20716526 36864000 0 130560 0 1397218 99.990 72286 15779 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 16:06:50] CVMFS is ok
[2025-12-14 16:06:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 16:06:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 16:06:50] Further information can be found at the LHC@home message board.
[2025-12-14 16:06:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 16:06:50] Checking for apptainer binary...
[2025-12-14 16:06:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 16:06:50] Running /usr/bin/apptainer --version
[2025-12-14 16:06:50] apptainer version 1.4.1-1.1
[2025-12-14 16:06:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 16:06:50] magicA161a
[2025-12-14 16:06:50] apptainer works
[2025-12-14 16:06:50] Set ATHENA_PROC_NUMBER=3
[2025-12-14 16:06:50] Set ATHENA_CORE_NUMBER=3
[2025-12-14 16:06:50] Starting ATLAS job with PandaID=6929311514
[2025-12-14 16:06:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 17:31:13]  *** The last 200 lines of the pilot log: ***
[2025-12-14 17:31:13] 2025-12-14 16:30:42,207 | INFO     | process IDs to be killed: [2778012] (in reverse order)
[2025-12-14 17:31:13] 2025-12-14 16:30:42,231 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 17:31:13] 2025-12-14 16:30:42,231 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 17:31:13] 2025-12-14 16:30:42,232 | INFO     | did not find any defunct processes belonging to 2778012
[2025-12-14 17:31:13] 2025-12-14 16:30:42,233 | INFO     | did not find any defunct processes belonging to 2778012
[2025-12-14 17:31:13] 2025-12-14 16:30:42,233 | INFO     | ready for new job
[2025-12-14 17:31:13] 2025-12-14 16:30:42,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 17:31:13] 2025-12-14 16:30:42,234 | INFO     | ***************************************
[2025-12-14 17:31:13] 2025-12-14 16:30:42,234 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 17:31:13] 2025-12-14 16:30:42,234 | INFO     | ***************************************
[2025-12-14 17:31:13] 2025-12-14 16:30:42,234 | INFO     | 
[2025-12-14 17:31:13] 2025-12-14 16:30:42,234 | INFO     | architecture information:
[2025-12-14 17:31:13] 2025-12-14 16:30:42,235 | INFO     | executing command: cat /etc/os-release
[2025-12-14 17:31:13] 2025-12-14 16:30:42,243 | INFO     | cat /etc/os-release:
[2025-12-14 17:31:13] NAME="CentOS Linux"
[2025-12-14 17:31:13] VERSION="7 (Core)"
[2025-12-14 17:31:13] ID="centos"
[2025-12-14 17:31:13] ID_LIKE="rhel fedora"
[2025-12-14 17:31:13] VERSION_ID="7"
[2025-12-14 17:31:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 17:31:13] ANSI_COLOR="0;31"
[2025-12-14 17:31:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 17:31:13] HOME_URL="https://www.centos.org/"
[2025-12-14 17:31:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 17:31:13] 
[2025-12-14 17:31:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 17:31:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 17:31:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 17:31:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 17:31:13] 
[2025-12-14 17:31:13] 2025-12-14 16:30:42,243 | INFO     | ***************************************
[2025-12-14 17:31:13] 2025-12-14 16:30:42,746 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 17:31:13] 2025-12-14 16:30:42,759 | INFO     | sufficient remaining disk space (385394671616 B)
[2025-12-14 17:31:13] 2025-12-14 16:30:42,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 17:31:13] 2025-12-14 16:30:42,759 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 17:31:13] 2025-12-14 16:30:42,759 | INFO     | update_server=False
[2025-12-14 17:31:13] 2025-12-14 16:30:42,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 17:31:13] 2025-12-14 16:30:42,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 17:31:13] 2025-12-14 16:30:42,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 17:31:13] 2025-12-14 16:30:43,031 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 17:31:13] 2025-12-14 16:30:43,031 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 17:31:13] 2025-12-14 16:30:43,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 17:31:13] 2025-12-14 16:30:43,031 | INFO     | will abort loop
[2025-12-14 17:31:13] 2025-12-14 16:30:43,119 | INFO     | all job control threads have been joined
[2025-12-14 17:31:13] 2025-12-14 16:30:43,320 | INFO     | all data control threads have been joined
[2025-12-14 17:31:13] 2025-12-14 16:30:43,765 | INFO     | [job] queue monitor thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:43,765 | INFO     | [job] retrieve thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:43,924 | INFO     | all payload control threads have been joined
[2025-12-14 17:31:13] 2025-12-14 16:30:43,942 | INFO     | [data] copytool_in thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,037 | INFO     | [job] job monitor thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,124 | INFO     | [job] control thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,326 | INFO     | [data] control thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,370 | INFO     | [payload] validate_post thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,498 | INFO     | [job] validate thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 17:31:13] 2025-12-14 16:30:44,550 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,574 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,930 | INFO     | [payload] control thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:44,940 | INFO     | [data] copytool_out thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:45,140 | INFO     | [payload] failed_post thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:45,146 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:45,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:30:48,510 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 17:31:13] 2025-12-14 16:31:01,846 | INFO     | [monitor] cgroup control has ended
[2025-12-14 17:31:13] 2025-12-14 16:31:02,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742545696576)>', '<ExcThread(monitor, started 139741911570176)>']
[2025-12-14 17:31:13] 2025-12-14 16:31:07,529 | INFO     | all workflow threads have been joined
[2025-12-14 17:31:13] 2025-12-14 16:31:07,530 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 17:31:13] 2025-12-14 16:31:07,530 | INFO     | traces error code: 0
[2025-12-14 17:31:13] 2025-12-14 16:31:07,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 17:31:13] 2025-12-14 16:31:13,767 | INFO     | PID=2771571 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 17:31:13] 2025-12-14 16:31:13,767 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 17:31:13] 2025-12-14 16:31:13,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 17:31:13] 2025-12-14 16:31:13,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 17:31:13] 2025-12-14 16:31:13,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 17:31:13] 2025-12-14 16:31:13,767 | INFO     | [monitor] control thread has ended
[2025-12-14 17:31:13] 2025-12-14 16:31:13,813 [wrapper] ==== pilot stdout END ====
[2025-12-14 17:31:13] 2025-12-14 16:31:13,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 17:31:13] 2025-12-14 16:31:13,818 [wrapper] pilotpid: 2771571
[2025-12-14 17:31:13] 2025-12-14 16:31:13,820 [wrapper] Pilot exit status: 0
[2025-12-14 17:31:13] 2025-12-14 16:31:13,827 [wrapper] pandaids: 6929311514
[2025-12-14 17:31:13] 2025-12-14 16:31:13,842 [wrapper] cleanup supervisor_pilot 2790041 2771572
[2025-12-14 17:31:13] 2025-12-14 16:31:13,845 [wrapper] Test setup, not cleaning
[2025-12-14 17:31:13] 2025-12-14 16:31:13,847 [wrapper] apfmon messages muted
[2025-12-14 17:31:13] 2025-12-14 16:31:13,849 [wrapper] ==== wrapper stdout END ====
[2025-12-14 17:31:13] 2025-12-14 16:31:13,852 [wrapper] ==== wrapper stderr END ====
[2025-12-14 17:31:13]  *** Error codes and diagnostics ***
[2025-12-14 17:31:13]     "exeErrorCode": 0,
[2025-12-14 17:31:13]     "exeErrorDiag": "",
[2025-12-14 17:31:13]     "pilotErrorCode": 0,
[2025-12-14 17:31:13]     "pilotErrorDiag": "",
[2025-12-14 17:31:13]  *** Listing of results directory ***
[2025-12-14 17:31:13] total 344844
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc    579449 Dec 13 14:45 pilot3.tar.gz
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc      5112 Dec 13 14:45 queuedata.json
[2025-12-14 17:31:13] -rwx------ 1 boinc boinc     36322 Dec 13 14:46 runpilot2-wrapper.sh
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc       100 Dec 14 16:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 17:31:13] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 16:06 run_atlas
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc       105 Dec 14 16:06 job.xml
[2025-12-14 17:31:13] -rw-r--r-- 2 boinc boinc 193223368 Dec 14 16:06 EVNT.47886829._000221.pool.root.1
[2025-12-14 17:31:13] -rw-r--r-- 2 boinc boinc    592416 Dec 14 16:06 input.tar.gz
[2025-12-14 17:31:13] -rw-r--r-- 2 boinc boinc     15847 Dec 14 16:06 start_atlas.sh
[2025-12-14 17:31:13] drwxrwx--x 2 boinc boinc      4096 Dec 14 16:06 shared
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc         0 Dec 14 16:06 boinc_setup_complete
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc      6448 Dec 14 16:06 init_data.xml
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc         0 Dec 14 16:06 boinc_lockfile
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc      2538 Dec 14 16:06 pandaJob.out
[2025-12-14 17:31:13] -rw------- 1 boinc boinc    991024 Dec 14 16:06 agis_schedconf.cvmfs.json
[2025-12-14 17:31:13] -rw------- 1 boinc boinc   1516240 Dec 14 16:06 agis_ddmendpoints.agis.ALL.json
[2025-12-14 17:31:13] drwx------ 5 boinc boinc      4096 Dec 14 16:06 pilot3
[2025-12-14 17:31:13] -rw------- 1 boinc boinc 154003767 Dec 14 17:30 HITS.47886831._005525.pool.root.1
[2025-12-14 17:31:13] -rw------- 1 boinc boinc        95 Dec 14 17:30 pilot_heartbeat.json
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc       529 Dec 14 17:30 boinc_task_state.xml
[2025-12-14 17:31:13] -rw------- 1 boinc boinc      1016 Dec 14 17:30 memory_monitor_summary.json
[2025-12-14 17:31:13] -rw------- 1 boinc boinc    258264 Dec 14 17:30 log.47886831._005525.job.log.tgz.1
[2025-12-14 17:31:13] -rw------- 1 boinc boinc      7747 Dec 14 17:30 heartbeat.json
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc      8192 Dec 14 17:31 boinc_mmap_file
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc        27 Dec 14 17:31 wrapper_checkpoint.txt
[2025-12-14 17:31:13] -rw------- 1 boinc boinc       747 Dec 14 17:31 pilotlog.txt
[2025-12-14 17:31:13] -rw------- 1 boinc boinc    737468 Dec 14 17:31 log.47886831._005525.job.log.1
[2025-12-14 17:31:13] -rw------- 1 boinc boinc       357 Dec 14 17:31 output.list
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc       620 Dec 14 17:31 runtime_log
[2025-12-14 17:31:13] -rw------- 1 boinc boinc   1013760 Dec 14 17:31 result.tar.gz
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc      8917 Dec 14 17:31 runtime_log.err
[2025-12-14 17:31:13] -rw------- 1 boinc boinc       662 Dec 14 17:31 abMNDmn7eo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOXPKDmvUziGn.diag
[2025-12-14 17:31:13] -rw-r--r-- 1 boinc boinc     10318 Dec 14 17:31 stderr.txt
[2025-12-14 17:31:13] HITS file was successfully produced:
[2025-12-14 17:31:13] -rw------- 1 boinc boinc 154003767 Dec 14 17:30 shared/HITS.pool.root.1
[2025-12-14 17:31:13]  *** Contents of shared directory: ***
[2025-12-14 17:31:13] total 340688
[2025-12-14 17:31:13] -rw-r--r-- 2 boinc boinc 193223368 Dec 14 16:06 ATLAS.root_0
[2025-12-14 17:31:13] -rw-r--r-- 2 boinc boinc    592416 Dec 14 16:06 input.tar.gz
[2025-12-14 17:31:13] -rw-r--r-- 2 boinc boinc     15847 Dec 14 16:06 start_atlas.sh
[2025-12-14 17:31:13] -rw------- 1 boinc boinc 154003767 Dec 14 17:30 HITS.pool.root.1
[2025-12-14 17:31:13] -rw------- 1 boinc boinc   1013760 Dec 14 17:31 result.tar.gz
17:31:14 (2767855): run_atlas exited; CPU time 14368.725997
17:31:14 (2767855): called boinc_finish(0)

</stderr_txt>
]]>

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