Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:51:24 (789987): wrapper (7.7.26015): starting
07:51:24 (789987): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 07:51:24] Arguments: --nthreads 4
[2025-12-14 07:51:24] Threads: 4
[2025-12-14 07:51:24] Checking for CVMFS
[2025-12-14 07:51:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 07:51:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 07:51:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 07:51:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 07:51:25] 2.9.2.0 362371 1441 85216 153986 1 57 19872737 36864000 0 130560 0 1113215 99.990 51849 20607 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 07:51:25] CVMFS is ok
[2025-12-14 07:51:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 07:51:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 07:51:25] Further information can be found at the LHC@home message board.
[2025-12-14 07:51:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 07:51:25] Checking for apptainer binary...
[2025-12-14 07:51:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 07:51:25] Running /usr/bin/apptainer --version
[2025-12-14 07:51:25] apptainer version 1.4.1-1.1
[2025-12-14 07:51:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 07:51:25] thA319a
[2025-12-14 07:51:25] apptainer works
[2025-12-14 07:51:25] Set ATHENA_PROC_NUMBER=4
[2025-12-14 07:51:25] Set ATHENA_CORE_NUMBER=4
[2025-12-14 07:51:25] Starting ATLAS job with PandaID=6929311531
[2025-12-14 07:51:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 09:06:58]  *** The last 200 lines of the pilot log: ***
[2025-12-14 09:06:58] 2025-12-14 08:06:27,985 | INFO     | process IDs to be killed: [800358] (in reverse order)
[2025-12-14 09:06:58] 2025-12-14 08:06:28,019 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 09:06:58] 2025-12-14 08:06:28,019 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 09:06:58] 2025-12-14 08:06:28,020 | INFO     | did not find any defunct processes belonging to 800358
[2025-12-14 09:06:58] 2025-12-14 08:06:28,022 | INFO     | did not find any defunct processes belonging to 800358
[2025-12-14 09:06:58] 2025-12-14 08:06:28,022 | INFO     | ready for new job
[2025-12-14 09:06:58] 2025-12-14 08:06:28,022 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 09:06:58] 2025-12-14 08:06:28,023 | INFO     | ***************************************
[2025-12-14 09:06:58] 2025-12-14 08:06:28,023 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 09:06:58] 2025-12-14 08:06:28,023 | INFO     | ***************************************
[2025-12-14 09:06:58] 2025-12-14 08:06:28,023 | INFO     | 
[2025-12-14 09:06:58] 2025-12-14 08:06:28,023 | INFO     | architecture information:
[2025-12-14 09:06:58] 2025-12-14 08:06:28,023 | INFO     | executing command: cat /etc/os-release
[2025-12-14 09:06:58] 2025-12-14 08:06:28,037 | INFO     | cat /etc/os-release:
[2025-12-14 09:06:58] NAME="CentOS Linux"
[2025-12-14 09:06:58] VERSION="7 (Core)"
[2025-12-14 09:06:58] ID="centos"
[2025-12-14 09:06:58] ID_LIKE="rhel fedora"
[2025-12-14 09:06:58] VERSION_ID="7"
[2025-12-14 09:06:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 09:06:58] ANSI_COLOR="0;31"
[2025-12-14 09:06:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 09:06:58] HOME_URL="https://www.centos.org/"
[2025-12-14 09:06:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 09:06:58] 
[2025-12-14 09:06:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 09:06:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 09:06:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 09:06:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 09:06:58] 
[2025-12-14 09:06:58] 2025-12-14 08:06:28,038 | INFO     | ***************************************
[2025-12-14 09:06:58] 2025-12-14 08:06:28,541 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 09:06:58] 2025-12-14 08:06:28,559 | INFO     | sufficient remaining disk space (340960215040 B)
[2025-12-14 09:06:58] 2025-12-14 08:06:28,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 09:06:58] 2025-12-14 08:06:28,560 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 09:06:58] 2025-12-14 08:06:28,560 | INFO     | update_server=False
[2025-12-14 09:06:58] 2025-12-14 08:06:28,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 09:06:58] 2025-12-14 08:06:28,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:06:58] 2025-12-14 08:06:28,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 09:06:58] 2025-12-14 08:06:28,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:06:58] 2025-12-14 08:06:28,645 | INFO     | aborting loop
[2025-12-14 09:06:58] 2025-12-14 08:06:28,780 | INFO     | all payload control threads have been joined
[2025-12-14 09:06:58] 2025-12-14 08:06:28,932 | INFO     | all data control threads have been joined
[2025-12-14 09:06:58] 2025-12-14 08:06:29,565 | INFO     | [job] queue monitor thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:29,566 | INFO     | [job] retrieve thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:29,594 | INFO     | [data] copytool_in thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:29,651 | INFO     | [job] job monitor thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:29,786 | INFO     | [payload] control thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:29,938 | INFO     | [data] control thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:29,968 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,090 | INFO     | all job control threads have been joined
[2025-12-14 09:06:58] 2025-12-14 08:06:30,405 | INFO     | [job] validate thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,499 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,566 | INFO     | [data] copytool_out thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,578 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,712 | INFO     | [payload] validate_post thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,803 | INFO     | [payload] failed_post thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:30,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 09:06:58] 2025-12-14 08:06:31,096 | INFO     | [job] control thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:31,627 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-12-14 09:06:58] 2025-12-14 08:06:34,824 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:38,468 | INFO     | [monitor] cgroup control has ended
[2025-12-14 09:06:58] 2025-12-14 08:06:39,368 | INFO     | job.realtimelogging is not enabled
[2025-12-14 09:06:58] 2025-12-14 08:06:40,373 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 09:06:58] 2025-12-14 08:06:41,952 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140582529546048)>', '<ExcThread(monitor, started 140581502174976)>']
[2025-12-14 09:06:58] 2025-12-14 08:06:46,976 | INFO     | all workflow threads have been joined
[2025-12-14 09:06:58] 2025-12-14 08:06:46,976 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 09:06:58] 2025-12-14 08:06:46,977 | INFO     | traces error code: 0
[2025-12-14 09:06:58] 2025-12-14 08:06:46,977 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 09:06:58] 2025-12-14 08:06:58,710 | INFO     | PID=793775 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 09:06:58] 2025-12-14 08:06:58,710 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 09:06:58] 2025-12-14 08:06:58,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 09:06:58] 2025-12-14 08:06:58,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 09:06:58] 2025-12-14 08:06:58,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 09:06:58] 2025-12-14 08:06:58,710 | INFO     | [monitor] control thread has ended
[2025-12-14 09:06:58] 2025-12-14 08:06:58,786 [wrapper] ==== pilot stdout END ====
[2025-12-14 09:06:58] 2025-12-14 08:06:58,790 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 09:06:58] 2025-12-14 08:06:58,795 [wrapper] pilotpid: 793775
[2025-12-14 09:06:58] 2025-12-14 08:06:58,799 [wrapper] Pilot exit status: 0
[2025-12-14 09:06:58] 2025-12-14 08:06:58,811 [wrapper] pandaids: 6929311531
[2025-12-14 09:06:58] 2025-12-14 08:06:58,832 [wrapper] cleanup supervisor_pilot  815058 793776
[2025-12-14 09:06:58] 2025-12-14 08:06:58,836 [wrapper] Test setup, not cleaning
[2025-12-14 09:06:58] 2025-12-14 08:06:58,840 [wrapper] apfmon messages muted
[2025-12-14 09:06:58] 2025-12-14 08:06:58,844 [wrapper] ==== wrapper stdout END ====
[2025-12-14 09:06:58] 2025-12-14 08:06:58,848 [wrapper] ==== wrapper stderr END ====
[2025-12-14 09:06:58]  *** Error codes and diagnostics ***
[2025-12-14 09:06:58]     "exeErrorCode": 0,
[2025-12-14 09:06:58]     "exeErrorDiag": "",
[2025-12-14 09:06:58]     "pilotErrorCode": 0,
[2025-12-14 09:06:58]     "pilotErrorDiag": "",
[2025-12-14 09:06:58]  *** Listing of results directory ***
[2025-12-14 09:06:58] total 337944
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc    579449 Dec 13 14:45 pilot3.tar.gz
[2025-12-14 09:06:58] -rwx------ 1 boinc boinc     36322 Dec 13 14:46 runpilot2-wrapper.sh
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc      5112 Dec 13 14:47 queuedata.json
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc       100 Dec 14 07:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 09:06:58] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 07:51 run_atlas
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc       105 Dec 14 07:51 job.xml
[2025-12-14 09:06:58] -rw-r--r-- 2 boinc boinc 190115532 Dec 14 07:51 EVNT.47886829._000222.pool.root.1
[2025-12-14 09:06:58] -rw-r--r-- 2 boinc boinc    592412 Dec 14 07:51 input.tar.gz
[2025-12-14 09:06:58] -rw-r--r-- 2 boinc boinc     15847 Dec 14 07:51 start_atlas.sh
[2025-12-14 09:06:58] drwxrwx--x 2 boinc boinc      4096 Dec 14 07:51 shared
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc         0 Dec 14 07:51 boinc_setup_complete
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc      6367 Dec 14 07:51 init_data.xml
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc         0 Dec 14 07:51 boinc_lockfile
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc      2537 Dec 14 07:51 pandaJob.out
[2025-12-14 09:06:58] -rw------- 1 boinc boinc    991736 Dec 14 07:51 agis_schedconf.cvmfs.json
[2025-12-14 09:06:58] -rw------- 1 boinc boinc   1516240 Dec 14 07:51 agis_ddmendpoints.agis.ALL.json
[2025-12-14 09:06:58] drwx------ 5 boinc boinc      4096 Dec 14 07:51 pilot3
[2025-12-14 09:06:58] -rw------- 1 boinc boinc 150194947 Dec 14 09:06 HITS.47886831._005542.pool.root.1
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc       529 Dec 14 09:06 boinc_task_state.xml
[2025-12-14 09:06:58] -rw------- 1 boinc boinc      1023 Dec 14 09:06 memory_monitor_summary.json
[2025-12-14 09:06:58] -rw------- 1 boinc boinc    257050 Dec 14 09:06 log.47886831._005542.job.log.tgz.1
[2025-12-14 09:06:58] -rw------- 1 boinc boinc      7762 Dec 14 09:06 heartbeat.json
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc      8192 Dec 14 09:06 boinc_mmap_file
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc        27 Dec 14 09:06 wrapper_checkpoint.txt
[2025-12-14 09:06:58] -rw------- 1 boinc boinc       746 Dec 14 09:06 pilotlog.txt
[2025-12-14 09:06:58] -rw------- 1 boinc boinc        95 Dec 14 09:06 pilot_heartbeat.json
[2025-12-14 09:06:58] -rw------- 1 boinc boinc    663689 Dec 14 09:06 log.47886831._005542.job.log.1
[2025-12-14 09:06:58] -rw------- 1 boinc boinc       357 Dec 14 09:06 output.list
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc       620 Dec 14 09:06 runtime_log
[2025-12-14 09:06:58] -rw------- 1 boinc boinc    942080 Dec 14 09:06 result.tar.gz
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc      8902 Dec 14 09:06 runtime_log.err
[2025-12-14 09:06:58] -rw------- 1 boinc boinc       659 Dec 14 09:06 iweNDmn7eo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaXPKDmJfKexm.diag
[2025-12-14 09:06:58] -rw-r--r-- 1 boinc boinc     10271 Dec 14 09:06 stderr.txt
[2025-12-14 09:06:58] HITS file was successfully produced:
[2025-12-14 09:06:58] -rw------- 1 boinc boinc 150194947 Dec 14 09:06 shared/HITS.pool.root.1
[2025-12-14 09:06:58]  *** Contents of shared directory: ***
[2025-12-14 09:06:58] total 333860
[2025-12-14 09:06:58] -rw-r--r-- 2 boinc boinc 190115532 Dec 14 07:51 ATLAS.root_0
[2025-12-14 09:06:58] -rw-r--r-- 2 boinc boinc    592412 Dec 14 07:51 input.tar.gz
[2025-12-14 09:06:58] -rw-r--r-- 2 boinc boinc     15847 Dec 14 07:51 start_atlas.sh
[2025-12-14 09:06:58] -rw------- 1 boinc boinc 150194947 Dec 14 09:06 HITS.pool.root.1
[2025-12-14 09:06:58] -rw------- 1 boinc boinc    942080 Dec 14 09:06 result.tar.gz
09:07:00 (789987): run_atlas exited; CPU time 16925.669092
09:07:00 (789987): called boinc_finish(0)

</stderr_txt>
]]>

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