Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:16:45 (8909): wrapper (7.7.26015): starting
22:16:45 (8909): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 22:16:45] Arguments: --nthreads 12
[2025-12-13 22:16:45] Threads: 12
[2025-12-13 22:16:45] Checking for CVMFS
[2025-12-13 22:16:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 22:16:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 22:16:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 22:16:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 22:16:46] 2.11.2.0 2914 313050 92404 153982 3 1 15410925 20275201 1 130560 1 138348748 99.963 18298575 14998 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 22:16:46] CVMFS is ok
[2025-12-13 22:16:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 22:16:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 22:16:46] Further information can be found at the LHC@home message board.
[2025-12-13 22:16:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 22:16:46] Checking for apptainer binary...
[2025-12-13 22:16:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 22:16:46] Running /usr/bin/apptainer --version
[2025-12-13 22:16:46] apptainer version 1.3.2-1.el7
[2025-12-13 22:16:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 22:16:47] c-205-5.aglt2.org
[2025-12-13 22:16:47] apptainer works
[2025-12-13 22:16:47] Set ATHENA_PROC_NUMBER=12
[2025-12-13 22:16:47] Set ATHENA_CORE_NUMBER=12
[2025-12-13 22:16:47] Starting ATLAS job with PandaID=6929310377
[2025-12-13 22:16:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 23:37:24]  *** The last 200 lines of the pilot log: ***
[2025-12-13 23:37:24]  mtime=0
[2025-12-13 23:37:24]  protocol_id=None
[2025-12-13 23:37:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 23:37:24]  replicas=None
[2025-12-13 23:37:24]  scope=mc23_13p6TeV
[2025-12-13 23:37:24]  status=None
[2025-12-13 23:37:24]  status_code=0
[2025-12-13 23:37:24]  storage_token=
[2025-12-13 23:37:24]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929310377/log.47886831._005118.job.log.tgz.1
[2025-12-13 23:37:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/44/log.47886831._005118.job.log.tgz.1
[2025-12-13 23:37:24]  workdir=None
[2025-12-13 23:37:24] ]
[2025-12-13 23:37:24] 2025-12-14 04:36:42,854 | INFO     | transferring file log.47886831._005118.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929310377/log.47886831._005118.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 23:37:24] 2025-12-14 04:36:42,854 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929310377/log.47886831._005118.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._005118.job
[2025-12-13 23:37:24] 2025-12-14 04:36:42,876 | INFO     | adding to output.list: log.47886831._005118.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/44/log.47886831._005118.job.log.tg
[2025-12-13 23:37:24] 2025-12-14 04:36:42,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 23:37:24] 2025-12-14 04:36:42,877 | INFO     | summary of transferred files:
[2025-12-13 23:37:24] 2025-12-14 04:36:42,878 | INFO     |  -- lfn=log.47886831._005118.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 23:37:24] 2025-12-14 04:36:42,878 | INFO     | stage-out finished correctly
[2025-12-13 23:37:24] 2025-12-14 04:36:44,418 | INFO     | monitor loop #356: job 0:6929310377 is in state 'finished'
[2025-12-13 23:37:24] 2025-12-14 04:36:44,418 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 23:37:24] 2025-12-14 04:36:44,678 | INFO     | time since job start (4781s) is within the limit (174528.0s)
[2025-12-13 23:37:24] 2025-12-14 04:36:45,792 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 23:37:24] 2025-12-14 04:36:46,500 | INFO     | job 6929310377 has state=finished
[2025-12-13 23:37:24] 2025-12-14 04:36:46,500 | INFO     | preparing for final server update for job 6929310377 in state='finished'
[2025-12-13 23:37:24] 2025-12-14 04:36:46,500 | INFO     | this job has now completed (state=finished)
[2025-12-13 23:37:24] 2025-12-14 04:36:46,501 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 23:37:24] 2025-12-14 04:36:46,501 | INFO     | log transfer has been attempted: DONE
[2025-12-13 23:37:24] 2025-12-14 04:36:46,501 | INFO     | job 6929310377 has finished - writing final server update
[2025-12-13 23:37:24] 2025-12-14 04:36:46,501 | INFO     | total number of processed events: 400 (read)
[2025-12-13 23:37:24] 2025-12-14 04:36:46,502 | INFO     | executing command: lscpu
[2025-12-13 23:37:24] 2025-12-14 04:36:46,530 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 23:37:24] 2025-12-14 04:36:46,680 | INFO     | time since job start (4783s) is within the limit (174528.0s)
[2025-12-13 23:37:24] 2025-12-14 04:36:46,921 | INFO     | monitor loop #357: job 0:6929310377 is in state 'finished'
[2025-12-13 23:37:24] 2025-12-14 04:36:46,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 23:37:24] 2025-12-14 04:36:48,686 | INFO     | time since job start (4785s) is within the limit (174528.0s)
[2025-12-13 23:37:24] 2025-12-14 04:36:49,424 | INFO     | monitor loop #358: job 0:6929310377 is in state 'finished'
[2025-12-13 23:37:24] 2025-12-14 04:36:49,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 23:37:24] 2025-12-14 04:36:50,688 | INFO     | time since job start (4787s) is within the limit (174528.0s)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,476 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 23:37:24] 2025-12-14 04:36:51,479 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-12-13 23:37:24] 2025-12-14 04:36:51,481 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929310377/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,482 | INFO     | extracted standard info from prmon json
[2025-12-13 23:37:24] 2025-12-14 04:36:51,482 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 23:37:24] 2025-12-14 04:36:51,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 23:37:24] 2025-12-14 04:36:51,482 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 23:37:24] 2025-12-14 04:36:51,482 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 23:37:24] 2025-12-14 04:36:51,484 | INFO     | fitting pss+swap vs Time
[2025-12-13 23:37:24] 2025-12-14 04:36:51,484 | INFO     | sum of square deviations: 110960220.0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,484 | INFO     | sum of deviations: -6885312291.999999
[2025-12-13 23:37:24] 2025-12-14 04:36:51,484 | INFO     | mean x: 1765684692.0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,485 | INFO     | mean y: 2848917.056338028
[2025-12-13 23:37:24] 2025-12-14 04:36:51,485 | INFO     | intersect: 109567254193.32411
[2025-12-13 23:37:24] 2025-12-14 04:36:51,485 | INFO     | chi2: 0.10631716124690148
[2025-12-13 23:37:24] 2025-12-14 04:36:51,485 | INFO     | current memory leak: -62.05 B/s (using 71 data points, chi2=0.11)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,485 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | ..............................
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . Timing measurements:
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . get job = 0 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . initial setup = 2 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . payload setup = 7 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . stage-in = 0 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . payload execution = 4752 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . stage-out = 0 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | . log creation = 0 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,486 | INFO     | ..............................
[2025-12-13 23:37:24] 2025-12-14 04:36:51,567 | INFO     | 
[2025-12-13 23:37:24] 2025-12-14 04:36:51,567 | INFO     | job summary report
[2025-12-13 23:37:24] 2025-12-14 04:36:51,568 | INFO     | --------------------------------------------------
[2025-12-13 23:37:24] 2025-12-14 04:36:51,568 | INFO     | PanDA job id: 6929310377
[2025-12-13 23:37:24] 2025-12-14 04:36:51,568 | INFO     | task id: 47886831
[2025-12-13 23:37:24] 2025-12-14 04:36:51,568 | INFO     | errors: (none)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 23:37:24] 2025-12-14 04:36:51,568 | INFO     | pilot state: finished 
[2025-12-13 23:37:24] 2025-12-14 04:36:51,569 | INFO     | transexitcode: 0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,569 | INFO     | exeerrorcode: 0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,569 | INFO     | exeerrordiag: 
[2025-12-13 23:37:24] 2025-12-14 04:36:51,569 | INFO     | exitcode: 0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,569 | INFO     | exitmsg: OK
[2025-12-13 23:37:24] 2025-12-14 04:36:51,569 | INFO     | cpuconsumptiontime: 51347 s
[2025-12-13 23:37:24] 2025-12-14 04:36:51,570 | INFO     | nevents: 400
[2025-12-13 23:37:24] 2025-12-14 04:36:51,570 | INFO     | neventsw: 0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,570 | INFO     | pid: 19036
[2025-12-13 23:37:24] 2025-12-14 04:36:51,570 | INFO     | pgrp: 19036
[2025-12-13 23:37:24] 2025-12-14 04:36:51,570 | INFO     | corecount: 12
[2025-12-13 23:37:24] 2025-12-14 04:36:51,570 | INFO     | event service: False
[2025-12-13 23:37:24] 2025-12-14 04:36:51,571 | INFO     | sizes: {0: 2283819, 1: 2284018, 6: 2284280, 11: 2284308, 4763: 2310486, 4764: 2319484, 4767: 2319668, 4773: 2319862}
[2025-12-13 23:37:24] 2025-12-14 04:36:51,571 | INFO     | --------------------------------------------------
[2025-12-13 23:37:24] 2025-12-14 04:36:51,571 | INFO     | 
[2025-12-13 23:37:24] 2025-12-14 04:36:51,571 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 23:37:24] 2025-12-14 04:36:51,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,602 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,602 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,602 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 23:37:24] 2025-12-14 04:36:51,602 | INFO     | job 6929310377 has completed (purged errors)
[2025-12-13 23:37:24] 2025-12-14 04:36:51,603 | INFO     | overall cleanup function is called
[2025-12-13 23:37:24] 2025-12-14 04:36:52,611 | INFO     | --- collectZombieJob: --- 10, [19036]
[2025-12-13 23:37:24] 2025-12-14 04:36:52,611 | INFO     | zombie collector waiting for pid 19036
[2025-12-13 23:37:24] 2025-12-14 04:36:52,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 23:37:24] 2025-12-14 04:36:52,611 | INFO     | collected zombie processes
[2025-12-13 23:37:24] 2025-12-14 04:36:52,611 | INFO     | will attempt to kill all subprocesses of pid=19036
[2025-12-13 23:37:24] 2025-12-14 04:36:52,702 | INFO     | process IDs to be killed: [19036] (in reverse order)
[2025-12-13 23:37:24] 2025-12-14 04:36:52,757 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 23:37:24] 2025-12-14 04:36:52,757 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 23:37:24] 2025-12-14 04:36:52,760 | INFO     | did not find any defunct processes belonging to 19036
[2025-12-13 23:37:24] 2025-12-14 04:36:52,763 | INFO     | did not find any defunct processes belonging to 19036
[2025-12-13 23:37:24] 2025-12-14 04:36:52,763 | INFO     | ready for new job
[2025-12-13 23:37:24] 2025-12-14 04:36:52,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 23:37:24] 2025-12-14 04:36:52,765 | INFO     | ***************************************
[2025-12-13 23:37:24] 2025-12-14 04:36:52,765 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 23:37:24] 2025-12-14 04:36:52,765 | INFO     | ***************************************
[2025-12-13 23:37:24] 2025-12-14 04:36:52,765 | INFO     | 
[2025-12-13 23:37:24] 2025-12-14 04:36:52,766 | INFO     | architecture information:
[2025-12-13 23:37:24] 2025-12-14 04:36:52,766 | INFO     | executing command: cat /etc/os-release
[2025-12-13 23:37:24] 2025-12-14 04:36:52,782 | INFO     | cat /etc/os-release:
[2025-12-13 23:37:24] NAME="CentOS Linux"
[2025-12-13 23:37:24] VERSION="7 (Core)"
[2025-12-13 23:37:24] ID="centos"
[2025-12-13 23:37:24] ID_LIKE="rhel fedora"
[2025-12-13 23:37:24] VERSION_ID="7"
[2025-12-13 23:37:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 23:37:24] ANSI_COLOR="0;31"
[2025-12-13 23:37:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 23:37:24] HOME_URL="https://www.centos.org/"
[2025-12-13 23:37:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 23:37:24] 
[2025-12-13 23:37:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 23:37:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 23:37:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 23:37:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 23:37:24] 
[2025-12-13 23:37:24] 2025-12-14 04:36:52,782 | INFO     | ***************************************
[2025-12-13 23:37:24] 2025-12-14 04:36:53,285 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 23:37:24] 2025-12-14 04:36:53,303 | INFO     | sufficient remaining disk space (29450305536 B)
[2025-12-13 23:37:24] 2025-12-14 04:36:53,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 23:37:24] 2025-12-14 04:36:53,303 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 23:37:24] 2025-12-14 04:36:53,304 | INFO     | update_server=False
[2025-12-13 23:37:24] 2025-12-14 04:36:53,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 23:37:24] 2025-12-14 04:36:53,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 23:37:24] 2025-12-14 04:36:53,305 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 23:37:24] 2025-12-14 04:36:53,305 | INFO     | aborting loop
[2025-12-13 23:37:24] 2025-12-14 04:36:53,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 23:37:24] 2025-12-14 04:36:53,911 | INFO     | all job control threads have been joined
[2025-12-13 23:37:24] 2025-12-14 04:36:54,160 | INFO     | all payload control threads have been joined
[2025-12-13 23:37:24] 2025-12-14 04:36:54,176 | INFO     | all data control threads have been joined
[2025-12-13 23:37:24] 2025-12-14 04:36:54,309 | INFO     | [job] job monitor thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:54,310 | INFO     | [job] retrieve thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:54,310 | INFO     | [job] queue monitor thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:54,390 | INFO     | [payload] validate_post thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:54,565 | INFO     | [data] copytool_in thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:54,917 | INFO     | [job] control thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:54,942 | INFO     | [job] validate thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,038 | INFO     | [payload] failed_post thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,110 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,165 | INFO     | [payload] control thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,181 | INFO     | [data] control thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,478 | INFO     | [data] copytool_out thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,524 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,524 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:55,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:36:56,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 23:37:24] 2025-12-14 04:37:00,387 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 23:37:24] 2025-12-14 04:37:10,093 | INFO     | [monitor] cgroup control has ended
[2025-12-13 23:37:24] 2025-12-14 04:37:12,076 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152367273792)>', '<ExcThread(monitor, started 140151913158400)>']
[2025-12-13 23:37:24] 2025-12-14 04:37:17,091 | INFO     | all workflow threads have been joined
[2025-12-13 23:37:24] 2025-12-14 04:37:17,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 23:37:24] 2025-12-14 04:37:17,092 | INFO     | traces error code: 0
[2025-12-13 23:37:24] 2025-12-14 04:37:17,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 23:37:24] 2025-12-14 04:37:23,886 | INFO     | PID=12606 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 23:37:24] 2025-12-14 04:37:23,887 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 23:37:24] 2025-12-14 04:37:23,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 23:37:24] 2025-12-14 04:37:23,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 23:37:24] 2025-12-14 04:37:23,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 23:37:24] 2025-12-14 04:37:23,887 | INFO     | [monitor] control thread has ended
[2025-12-13 23:37:24] 2025-12-14 04:37:23,981 [wrapper] ==== pilot stdout END ====
[2025-12-13 23:37:24] 2025-12-14 04:37:23,985 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 23:37:24] 2025-12-14 04:37:23,988 [wrapper] pilotpid: 12606
[2025-12-13 23:37:24] 2025-12-14 04:37:23,992 [wrapper] Pilot exit status: 0
[2025-12-13 23:37:24] 2025-12-14 04:37:24,009 [wrapper] pandaids: 6929310377
[2025-12-13 23:37:24] 2025-12-14 04:37:24,050 [wrapper] cleanup supervisor_pilot 14762 12607
[2025-12-13 23:37:24] 2025-12-14 04:37:24,054 [wrapper] Test setup, not cleaning
[2025-12-13 23:37:24] 2025-12-14 04:37:24,058 [wrapper] apfmon messages muted
[2025-12-13 23:37:24] 2025-12-14 04:37:24,062 [wrapper] ==== wrapper stdout END ====
[2025-12-13 23:37:24] 2025-12-14 04:37:24,066 [wrapper] ==== wrapper stderr END ====
[2025-12-13 23:37:24]  *** Error codes and diagnostics ***
[2025-12-13 23:37:24]     "exeErrorCode": 0,
[2025-12-13 23:37:24]     "exeErrorDiag": "",
[2025-12-13 23:37:24]     "pilotErrorCode": 0,
[2025-12-13 23:37:24]     "pilotErrorDiag": "",
[2025-12-13 23:37:24]  *** Listing of results directory ***
[2025-12-13 23:37:24] total 343744
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:45 pilot3.tar.gz
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:45 queuedata.json
[2025-12-13 23:37:24] -rwx------ 1 boincer umatlas     36322 Dec 13 08:45 runpilot2-wrapper.sh
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas       100 Dec 13 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 23:37:24] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 22:16 run_atlas
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas       105 Dec 13 22:16 job.xml
[2025-12-13 23:37:24] -rw-r--r-- 2 boincer umatlas 191427502 Dec 13 22:16 EVNT.47886829._000205.pool.root.1
[2025-12-13 23:37:24] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 22:16 start_atlas.sh
[2025-12-13 23:37:24] drwxrwx--x 2 boincer umatlas      4096 Dec 13 22:16 shared
[2025-12-13 23:37:24] -rw-r--r-- 2 boincer umatlas    592409 Dec 13 22:16 input.tar.gz
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas         0 Dec 13 22:16 boinc_lockfile
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas      2538 Dec 13 22:16 pandaJob.out
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas        57 Dec 13 22:16 setup.sh.local
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas    991736 Dec 13 22:17 agis_schedconf.cvmfs.json
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas   1516240 Dec 13 22:17 agis_ddmendpoints.agis.ALL.json
[2025-12-13 23:37:24] drwx------ 5 boincer umatlas      4096 Dec 13 22:17 pilot3
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 23:27 init_data.xml
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas 154497648 Dec 13 23:36 HITS.47886831._005118.pool.root.1
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas      1058 Dec 13 23:36 memory_monitor_summary.json
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas       529 Dec 13 23:36 boinc_task_state.xml
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas    382305 Dec 13 23:36 log.47886831._005118.job.log.tgz.1
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas      7848 Dec 13 23:36 heartbeat.json
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 23:37 boinc_mmap_file
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas        27 Dec 13 23:37 wrapper_checkpoint.txt
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas        95 Dec 13 23:37 pilot_heartbeat.json
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas       745 Dec 13 23:37 pilotlog.txt
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas    691362 Dec 13 23:37 log.47886831._005118.job.log.1
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas       357 Dec 13 23:37 output.list
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas       620 Dec 13 23:37 runtime_log
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas   1095680 Dec 13 23:37 result.tar.gz
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 23:37 runtime_log.err
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas       658 Dec 13 23:37 EHlMDma7eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmecTKDm7doUQn.diag
[2025-12-13 23:37:24] -rw-r--r-- 1 boincer umatlas     21774 Dec 13 23:37 stderr.txt
[2025-12-13 23:37:24] HITS file was successfully produced:
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas 154497648 Dec 13 23:36 shared/HITS.pool.root.1
[2025-12-13 23:37:24]  *** Contents of shared directory: ***
[2025-12-13 23:37:24] total 339496
[2025-12-13 23:37:24] -rw-r--r-- 2 boincer umatlas 191427502 Dec 13 22:16 ATLAS.root_0
[2025-12-13 23:37:24] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 22:16 start_atlas.sh
[2025-12-13 23:37:24] -rw-r--r-- 2 boincer umatlas    592409 Dec 13 22:16 input.tar.gz
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas 154497648 Dec 13 23:36 HITS.pool.root.1
[2025-12-13 23:37:24] -rw------- 1 boincer umatlas   1095680 Dec 13 23:37 result.tar.gz
23:37:25 (8909): run_atlas exited; CPU time 51326.151875
23:37:25 (8909): called boinc_finish(0)

</stderr_txt>
]]>

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