Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:25:09 (14858): wrapper (7.7.26015): starting
08:25:09 (14858): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 08:25:09] Arguments: --nthreads 8
[2025-12-14 08:25:09] Threads: 8
[2025-12-14 08:25:09] Checking for CVMFS
[2025-12-14 08:25:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 08:25:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 08:25:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 08:25:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 08:25:11] 2.11.2.0 7372 310824 201184 153988 2 60 13561152 25165825 4186 130560 28 150275388 99.871 90175173 2836 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 08:25:11] CVMFS is ok
[2025-12-14 08:25:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 08:25:11] Checking for apptainer binary...
[2025-12-14 08:25:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 08:25:11] Running /usr/bin/apptainer --version
[2025-12-14 08:25:12] apptainer version 1.3.2-1.el7
[2025-12-14 08:25:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 08:25:17] cg-vwn297.simple-grid.lan
[2025-12-14 08:25:17] apptainer works
[2025-12-14 08:25:17] Set ATHENA_PROC_NUMBER=8
[2025-12-14 08:25:17] Set ATHENA_CORE_NUMBER=8
[2025-12-14 08:25:18] Starting ATLAS job with PandaID=6929368260
[2025-12-14 08:25:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 12:50:51]  *** The last 200 lines of the pilot log: ***
[2025-12-14 12:50:51] 2025-12-14 11:50:07,489 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 12:50:51] 2025-12-14 11:50:07,490 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-12-14 12:50:51] 2025-12-14 11:50:07,492 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6929368260/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,493 | INFO     | extracted standard info from prmon json
[2025-12-14 12:50:51] 2025-12-14 11:50:07,493 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 12:50:51] 2025-12-14 11:50:07,493 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 12:50:51] 2025-12-14 11:50:07,494 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 12:50:51] 2025-12-14 11:50:07,494 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 12:50:51] 2025-12-14 11:50:07,499 | INFO     | fitting pss+swap vs Time
[2025-12-14 12:50:51] 2025-12-14 11:50:07,500 | INFO     | sum of square deviations: 4729621702.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,502 | INFO     | sum of deviations: 59737590512.49999
[2025-12-14 12:50:51] 2025-12-14 11:50:07,503 | INFO     | mean x: 1765705362.5
[2025-12-14 12:50:51] 2025-12-14 11:50:07,503 | INFO     | mean y: 2444471.9475806453
[2025-12-14 12:50:51] 2025-12-14 11:50:07,503 | INFO     | intersect: -22299335788.01418
[2025-12-14 12:50:51] 2025-12-14 11:50:07,503 | INFO     | chi2: 7.8406588943731315
[2025-12-14 12:50:51] 2025-12-14 11:50:07,504 | INFO     | sum of square deviations: 4449281562.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,506 | INFO     | sum of deviations: 92119603169.00002
[2025-12-14 12:50:51] 2025-12-14 11:50:07,506 | INFO     | mean x: 1765705210.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,506 | INFO     | mean y: 2461863.4403292183
[2025-12-14 12:50:51] 2025-12-14 11:50:07,506 | INFO     | intersect: -36555364606.305534
[2025-12-14 12:50:51] 2025-12-14 11:50:07,507 | INFO     | chi2: 6.290848013204704
[2025-12-14 12:50:51] 2025-12-14 11:50:07,507 | INFO     | current chi2=6.290848013204704 (change=19.76633471812749 %)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,507 | INFO     | right removable region: 242
[2025-12-14 12:50:51] 2025-12-14 11:50:07,515 | INFO     | sum of square deviations: 4449281562.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,517 | INFO     | sum of deviations: -25116867059.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,517 | INFO     | mean x: 1765705515.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,517 | INFO     | mean y: 2490590.1028806586
[2025-12-14 12:50:51] 2025-12-14 11:50:07,517 | INFO     | intersect: 9970165161.28978
[2025-12-14 12:50:51] 2025-12-14 11:50:07,518 | INFO     | chi2: 3.1872248331125737
[2025-12-14 12:50:51] 2025-12-14 11:50:07,518 | INFO     | current chi2=3.1872248331125737 (change=59.350038357109334 %)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,518 | INFO     | sum of square deviations: 4180243959.5
[2025-12-14 12:50:51] 2025-12-14 11:50:07,520 | INFO     | sum of deviations: -65515390037.5
[2025-12-14 12:50:51] 2025-12-14 11:50:07,521 | INFO     | mean x: 1765705667.5
[2025-12-14 12:50:51] 2025-12-14 11:50:07,521 | INFO     | mean y: 2513347.4831932774
[2025-12-14 12:50:51] 2025-12-14 11:50:07,521 | INFO     | intersect: 27675753622.082718
[2025-12-14 12:50:51] 2025-12-14 11:50:07,521 | INFO     | chi2: 1.889312311569438
[2025-12-14 12:50:51] 2025-12-14 11:50:07,521 | INFO     | current chi2=1.889312311569438 (change=40.72233963725812 %)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,522 | INFO     | sum of square deviations: 3922276332.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,524 | INFO     | sum of deviations: -66939861580.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,524 | INFO     | mean x: 1765705820.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,524 | INFO     | mean y: 2514169.2746781115
[2025-12-14 12:50:51] 2025-12-14 11:50:07,524 | INFO     | intersect: 30137082256.04975
[2025-12-14 12:50:51] 2025-12-14 11:50:07,525 | INFO     | chi2: 1.870704555886726
[2025-12-14 12:50:51] 2025-12-14 11:50:07,525 | INFO     | current chi2=1.870704555886726 (change=0.9848956982265508 %)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,525 | INFO     | left removable region: 30
[2025-12-14 12:50:51] 2025-12-14 11:50:07,525 | INFO     | sum of square deviations: 2954447953.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,534 | INFO     | sum of deviations: -11245037375.0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,535 | INFO     | mean x: 1765706094.5
[2025-12-14 12:50:51] 2025-12-14 11:50:07,535 | INFO     | mean y: 2518833.2358490564
[2025-12-14 12:50:51] 2025-12-14 11:50:07,535 | INFO     | intersect: 6723040345.810209
[2025-12-14 12:50:51] 2025-12-14 11:50:07,535 | INFO     | chi2: 0.09239982294638867
[2025-12-14 12:50:51] 2025-12-14 11:50:07,535 | INFO     | current memory leak: -3.81 B/s (using 212 data points, chi2=0.09)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,536 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,536 | INFO     | ..............................
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . Timing measurements:
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . get job = 0 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . initial setup = 9 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . payload setup = 118 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . stage-in = 0 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . payload execution = 15243 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . stage-out = 3 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | . log creation = 1 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,537 | INFO     | ..............................
[2025-12-14 12:50:51] 2025-12-14 11:50:07,737 | INFO     | 
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | job summary report
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | --------------------------------------------------
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | PanDA job id: 6929368260
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | task id: 47898878
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | errors: (none)
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | pilot state: finished 
[2025-12-14 12:50:51] 2025-12-14 11:50:07,738 | INFO     | transexitcode: 0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | exeerrorcode: 0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | exeerrordiag: 
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | exitcode: 0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | exitmsg: OK
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | cpuconsumptiontime: 55819 s
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | nevents: 400
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | neventsw: 0
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | pid: 25227
[2025-12-14 12:50:51] 2025-12-14 11:50:07,739 | INFO     | pgrp: 25227
[2025-12-14 12:50:51] 2025-12-14 11:50:07,740 | INFO     | corecount: 8
[2025-12-14 12:50:51] 2025-12-14 11:50:07,740 | INFO     | event service: False
[2025-12-14 12:50:51] 2025-12-14 11:50:07,740 | INFO     | sizes: {0: 2283086, 1: 2283771, 2: 2283970, 12: 2283970, 23: 2283998, 34: 2284026, 45: 2284182, 55: 2284210, 66: 2284238, 77: 2284266, 88: 2284322, 95: 2284892, 98
[2025-12-14 12:50:51] 2025-12-14 11:50:07,740 | INFO     | --------------------------------------------------
[2025-12-14 12:50:51] 2025-12-14 11:50:07,740 | INFO     | 
[2025-12-14 12:50:51] 2025-12-14 11:50:07,740 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-12-14 12:50:51] 2025-12-14 11:50:08,323 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 12:50:51] 2025-12-14 11:50:08,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,326 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 12:50:51] 2025-12-14 11:50:08,326 | INFO     | job 6929368260 has completed (purged errors)
[2025-12-14 12:50:51] 2025-12-14 11:50:08,326 | INFO     | overall cleanup function is called
[2025-12-14 12:50:51] 2025-12-14 11:50:09,335 | INFO     | --- collectZombieJob: --- 10, [25227]
[2025-12-14 12:50:51] 2025-12-14 11:50:09,336 | INFO     | zombie collector waiting for pid 25227
[2025-12-14 12:50:51] 2025-12-14 11:50:09,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 12:50:51] 2025-12-14 11:50:09,336 | INFO     | collected zombie processes
[2025-12-14 12:50:51] 2025-12-14 11:50:09,336 | INFO     | will attempt to kill all subprocesses of pid=25227
[2025-12-14 12:50:51] 2025-12-14 11:50:09,466 | INFO     | process IDs to be killed: [25227] (in reverse order)
[2025-12-14 12:50:51] 2025-12-14 11:50:10,192 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 12:50:51] 2025-12-14 11:50:10,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 12:50:51] 2025-12-14 11:50:10,196 | INFO     | did not find any defunct processes belonging to 25227
[2025-12-14 12:50:51] 2025-12-14 11:50:10,199 | INFO     | did not find any defunct processes belonging to 25227
[2025-12-14 12:50:51] 2025-12-14 11:50:10,199 | INFO     | ready for new job
[2025-12-14 12:50:51] 2025-12-14 11:50:10,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 12:50:51] 2025-12-14 11:50:10,201 | INFO     | ***************************************
[2025-12-14 12:50:51] 2025-12-14 11:50:10,201 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 12:50:51] 2025-12-14 11:50:10,201 | INFO     | ***************************************
[2025-12-14 12:50:51] 2025-12-14 11:50:10,201 | INFO     | 
[2025-12-14 12:50:51] 2025-12-14 11:50:10,202 | INFO     | pilot is running in a VM
[2025-12-14 12:50:51] 2025-12-14 11:50:10,202 | INFO     | architecture information:
[2025-12-14 12:50:51] 2025-12-14 11:50:10,219 | INFO     | executing command: cat /etc/os-release
[2025-12-14 12:50:51] 2025-12-14 11:50:10,438 | INFO     | cat /etc/os-release:
[2025-12-14 12:50:51] NAME="CentOS Linux"
[2025-12-14 12:50:51] VERSION="7 (Core)"
[2025-12-14 12:50:51] ID="centos"
[2025-12-14 12:50:51] ID_LIKE="rhel fedora"
[2025-12-14 12:50:51] VERSION_ID="7"
[2025-12-14 12:50:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 12:50:51] ANSI_COLOR="0;31"
[2025-12-14 12:50:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 12:50:51] HOME_URL="https://www.centos.org/"
[2025-12-14 12:50:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 12:50:51] 
[2025-12-14 12:50:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 12:50:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 12:50:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 12:50:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 12:50:51] 
[2025-12-14 12:50:51] 2025-12-14 11:50:10,439 | INFO     | ***************************************
[2025-12-14 12:50:51] 2025-12-14 11:50:10,943 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-12-14 12:50:51] 2025-12-14 11:50:11,227 | INFO     | sufficient remaining disk space (497173921792 B)
[2025-12-14 12:50:51] 2025-12-14 11:50:11,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 12:50:51] 2025-12-14 11:50:11,228 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 12:50:51] 2025-12-14 11:50:11,228 | INFO     | update_server=False
[2025-12-14 12:50:51] 2025-12-14 11:50:11,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 12:50:51] 2025-12-14 11:50:11,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:50:51] 2025-12-14 11:50:11,230 | INFO     | aborting loop
[2025-12-14 12:50:51] 2025-12-14 11:50:12,196 | INFO     | all payload control threads have been joined
[2025-12-14 12:50:51] 2025-12-14 11:50:12,233 | INFO     | [job] retrieve thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:12,235 | INFO     | [job] job monitor thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:12,302 | INFO     | all data control threads have been joined
[2025-12-14 12:50:51] 2025-12-14 11:50:12,402 | INFO     | [payload] validate_post thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:12,449 | INFO     | all job control threads have been joined
[2025-12-14 12:50:51] 2025-12-14 11:50:12,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 12:50:51] 2025-12-14 11:50:12,573 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:12,626 | INFO     | [payload] failed_post thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:12,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:50:51] 2025-12-14 11:50:13,161 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 12:50:51] 2025-12-14 11:50:13,202 | INFO     | [payload] control thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,206 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,308 | INFO     | [data] control thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,455 | INFO     | [job] control thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,515 | INFO     | [data] copytool_in thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,675 | INFO     | [job] validate thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:13,757 | INFO     | [job] queue monitor thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:14,575 | INFO     | [data] copytool_out thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:17,193 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:21,659 | INFO     | job.realtimelogging is not enabled
[2025-12-14 12:50:51] 2025-12-14 11:50:22,665 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 12:50:51] 2025-12-14 11:50:39,895 | INFO     | PID=18615 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 12:50:51] 2025-12-14 11:50:39,895 | INFO     | .. there are 9 such processes running
[2025-12-14 12:50:51] 2025-12-14 11:50:39,896 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 12:50:51] 2025-12-14 11:50:39,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 12:50:51] 2025-12-14 11:50:39,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 12:50:51] 2025-12-14 11:50:41,900 | INFO     | [monitor] cgroup control has ended
[2025-12-14 12:50:51] 2025-12-14 11:50:42,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715520030528)>', '<ExcThread(monitor, started 140714872665856)>']
[2025-12-14 12:50:51] 2025-12-14 11:50:42,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 12:50:51] 2025-12-14 11:50:42,915 | INFO     | [monitor] control thread has ended
[2025-12-14 12:50:51] 2025-12-14 11:50:47,424 | INFO     | all workflow threads have been joined
[2025-12-14 12:50:51] 2025-12-14 11:50:47,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 12:50:51] 2025-12-14 11:50:47,425 | INFO     | traces error code: 0
[2025-12-14 12:50:51] 2025-12-14 11:50:47,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 12:50:51] 2025-12-14 11:50:47,719 [wrapper] ==== pilot stdout END ====
[2025-12-14 12:50:51] 2025-12-14 11:50:47,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 12:50:51] 2025-12-14 11:50:47,821 [wrapper] pilotpid: 18615
[2025-12-14 12:50:51] 2025-12-14 11:50:47,884 [wrapper] Pilot exit status: 0
[2025-12-14 12:50:51] 2025-12-14 11:50:48,319 [wrapper] pandaids: 6929368260
[2025-12-14 12:50:51] 2025-12-14 11:50:49,337 [wrapper] cleanup supervisor_pilot 17616 18616
[2025-12-14 12:50:51] 2025-12-14 11:50:49,387 [wrapper] Test setup, not cleaning
[2025-12-14 12:50:51] 2025-12-14 11:50:49,439 [wrapper] apfmon messages muted
[2025-12-14 12:50:51] 2025-12-14 11:50:49,522 [wrapper] ==== wrapper stdout END ====
[2025-12-14 12:50:51] 2025-12-14 11:50:49,616 [wrapper] ==== wrapper stderr END ====
[2025-12-14 12:50:51]  *** Error codes and diagnostics ***
[2025-12-14 12:50:51]     "exeErrorCode": 0,
[2025-12-14 12:50:51]     "exeErrorDiag": "",
[2025-12-14 12:50:51]     "pilotErrorCode": 0,
[2025-12-14 12:50:51]     "pilotErrorDiag": "",
[2025-12-14 12:50:51]  *** Listing of results directory ***
[2025-12-14 12:50:51] total 380472
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc    579449 Dec 13 14:44 pilot3.tar.gz
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc      5112 Dec 13 14:44 queuedata.json
[2025-12-14 12:50:51] -rwx------. 1 boinc boinc     36322 Dec 13 14:44 runpilot2-wrapper.sh
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc       100 Dec 14 08:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 12:50:51] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 08:25 run_atlas
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc       105 Dec 14 08:25 job.xml
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc      6392 Dec 14 08:25 init_data.xml
[2025-12-14 12:50:51] -rw-r--r--. 2 boinc boinc 196855846 Dec 14 08:25 EVNT.47898875._000001.pool.root.1
[2025-12-14 12:50:51] -rw-r--r--. 2 boinc boinc     15847 Dec 14 08:25 start_atlas.sh
[2025-12-14 12:50:51] drwxrwx--x. 2 boinc boinc        68 Dec 14 08:25 shared
[2025-12-14 12:50:51] -rw-r--r--. 2 boinc boinc    592368 Dec 14 08:25 input.tar.gz
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc         0 Dec 14 08:25 boinc_lockfile
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc      2485 Dec 14 08:25 pandaJob.out
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc    991728 Dec 14 08:29 agis_schedconf.cvmfs.json
[2025-12-14 12:50:51] drwx------. 5 boinc boinc      4096 Dec 14 08:29 pilot3
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc 183738680 Dec 14 12:47 HITS.47898878._000001.pool.root.1
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc       531 Dec 14 12:47 boinc_task_state.xml
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc      1028 Dec 14 12:48 memory_monitor_summary.json
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc   1516240 Dec 14 12:48 agis_ddmendpoints.agis.ALL.json
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc    457122 Dec 14 12:48 log.47898878._000001.job.log.tgz.1
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc      7756 Dec 14 12:50 heartbeat.json
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc      8192 Dec 14 12:50 boinc_mmap_file
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc        28 Dec 14 12:50 wrapper_checkpoint.txt
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc        95 Dec 14 12:50 pilot_heartbeat.json
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc      4956 Dec 14 12:50 pilotlog.txt
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc   2093380 Dec 14 12:50 log.47898878._000001.job.log.1
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc       357 Dec 14 12:50 output.list
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc       620 Dec 14 12:50 runtime_log
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc   2570240 Dec 14 12:50 result.tar.gz
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc      8817 Dec 14 12:50 runtime_log.err
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc       656 Dec 14 12:50 3krLDm05eo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuPPKDmnSPrnm.diag
[2025-12-14 12:50:51] -rw-r--r--. 1 boinc boinc     20750 Dec 14 12:50 stderr.txt
[2025-12-14 12:50:51] HITS file was successfully produced:
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc 183738680 Dec 14 12:47 shared/HITS.pool.root.1
[2025-12-14 12:50:51]  *** Contents of shared directory: ***
[2025-12-14 12:50:51] total 374788
[2025-12-14 12:50:51] -rw-r--r--. 2 boinc boinc 196855846 Dec 14 08:25 ATLAS.root_0
[2025-12-14 12:50:51] -rw-r--r--. 2 boinc boinc     15847 Dec 14 08:25 start_atlas.sh
[2025-12-14 12:50:51] -rw-r--r--. 2 boinc boinc    592368 Dec 14 08:25 input.tar.gz
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc 183738680 Dec 14 12:47 HITS.pool.root.1
[2025-12-14 12:50:51] -rw-------. 1 boinc boinc   2570240 Dec 14 12:50 result.tar.gz
12:50:52 (14858): run_atlas exited; CPU time 56037.454368
12:50:52 (14858): called boinc_finish(0)

</stderr_txt>
]]>

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