Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:41:01 (3683775): wrapper (7.7.26015): starting
22:41:01 (3683775): wrapper: running run_atlas (--nthreads 10)
[2025-12-13 22:41:01] Arguments: --nthreads 10
[2025-12-13 22:41:01] Threads: 10
[2025-12-13 22:41:01] Checking for CVMFS
[2025-12-13 22:41:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 22:41:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 22:41:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 22:41:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 22:41:24] 2.13.3.0 9456 55443 333360 153982 3 371 29883649 32935936 19621 16776704 0 175932296 99.321 298249676 39130 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 22:41:24] CVMFS is ok
[2025-12-13 22:41:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 22:41:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 22:41:24] Further information can be found at the LHC@home message board.
[2025-12-13 22:41:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 22:41:24] Checking for apptainer binary...
[2025-12-13 22:41:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 22:41:24] Running /usr/bin/apptainer --version
[2025-12-13 22:41:24] apptainer version 1.4.5-2.el9
[2025-12-13 22:41:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 22:41:25] c6-5-7-2.aglt2.org
[2025-12-13 22:41:25] apptainer works
[2025-12-13 22:41:25] Set ATHENA_PROC_NUMBER=10
[2025-12-13 22:41:25] Set ATHENA_CORE_NUMBER=10
[2025-12-13 22:41:25] Starting ATLAS job with PandaID=6929218688
[2025-12-13 22:41:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 05:11:50]  *** The last 200 lines of the pilot log: ***
[2025-12-14 05:11:50] 2025-12-14 10:11:10,890 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2808.500928571429
[2025-12-14 05:11:50] 2025-12-14 10:11:10,952 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6929218688/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 05:11:50] 2025-12-14 10:11:10,977 | INFO     | extracted standard info from prmon json
[2025-12-14 05:11:50] 2025-12-14 10:11:10,977 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 05:11:50] 2025-12-14 10:11:10,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 05:11:50] 2025-12-14 10:11:10,984 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 05:11:50] 2025-12-14 10:11:10,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 05:11:50] 2025-12-14 10:11:11,018 | INFO     | fitting pss+swap vs Time
[2025-12-14 05:11:50] 2025-12-14 10:11:11,045 | INFO     | sum of square deviations: 16881611128.416878
[2025-12-14 05:11:50] 2025-12-14 10:11:11,071 | INFO     | sum of deviations: 12903810386.337711
[2025-12-14 05:11:50] 2025-12-14 10:11:11,071 | INFO     | mean x: 1765695456.878628
[2025-12-14 05:11:50] 2025-12-14 10:11:11,071 | INFO     | mean y: 2561269.572559367
[2025-12-14 05:11:50] 2025-12-14 10:11:11,071 | INFO     | intersect: -1347084756.6427362
[2025-12-14 05:11:50] 2025-12-14 10:11:11,072 | INFO     | chi2: 3.9605944672452575
[2025-12-14 05:11:50] 2025-12-14 10:11:11,072 | INFO     | sum of square deviations: 16222356278.783392
[2025-12-14 05:11:50] 2025-12-14 10:11:11,107 | INFO     | sum of deviations: 63950630322.24603
[2025-12-14 05:11:50] 2025-12-14 10:11:11,108 | INFO     | mean x: 1765695304.3877006
[2025-12-14 05:11:50] 2025-12-14 10:11:11,108 | INFO     | mean y: 2572983.053475936
[2025-12-14 05:11:50] 2025-12-14 10:11:11,108 | INFO     | intersect: -6958026681.515834
[2025-12-14 05:11:50] 2025-12-14 10:11:11,109 | INFO     | chi2: 2.4357077033308037
[2025-12-14 05:11:50] 2025-12-14 10:11:11,109 | INFO     | current chi2=2.4357077033308037 (change=38.50146175089393 %)
[2025-12-14 05:11:50] 2025-12-14 10:11:11,109 | INFO     | sum of square deviations: 15580314828.265562
[2025-12-14 05:11:50] 2025-12-14 10:11:11,133 | INFO     | sum of deviations: 62685798214.17614
[2025-12-14 05:11:50] 2025-12-14 10:11:11,134 | INFO     | mean x: 1765695151.8753388
[2025-12-14 05:11:50] 2025-12-14 10:11:11,134 | INFO     | mean y: 2572682.590785908
[2025-12-14 05:11:50] 2025-12-14 10:11:11,134 | INFO     | intersect: -7101520605.524637
[2025-12-14 05:11:50] 2025-12-14 10:11:11,134 | INFO     | chi2: 2.4364366796973167
[2025-12-14 05:11:50] 2025-12-14 10:11:11,135 | INFO     | current chi2=2.4364366796973167 (change=-0.02992872935928097 %)
[2025-12-14 05:11:50] 2025-12-14 10:11:11,135 | INFO     | right removable region: 368
[2025-12-14 05:11:50] 2025-12-14 10:11:11,150 | INFO     | sum of square deviations: 16222199264.783403
[2025-12-14 05:11:50] 2025-12-14 10:11:11,154 | INFO     | sum of deviations: -72401063791.7086
[2025-12-14 05:11:50] 2025-12-14 10:11:11,154 | INFO     | mean x: 1765695609.3877006
[2025-12-14 05:11:50] 2025-12-14 10:11:11,154 | INFO     | mean y: 2580930.280748663
[2025-12-14 05:11:50] 2025-12-14 10:11:11,154 | INFO     | intersect: 7883031562.491965
[2025-12-14 05:11:50] 2025-12-14 10:11:11,175 | INFO     | chi2: 1.878784986266258
[2025-12-14 05:11:50] 2025-12-14 10:11:11,175 | INFO     | current chi2=1.878784986266258 (change=52.56305582901489 %)
[2025-12-14 05:11:50] 2025-12-14 10:11:11,176 | INFO     | sum of square deviations: 15580206134.878077
[2025-12-14 05:11:50] 2025-12-14 10:11:11,196 | INFO     | sum of deviations: -82965756319.0325
[2025-12-14 05:11:50] 2025-12-14 10:11:11,196 | INFO     | mean x: 1765695761.894309
[2025-12-14 05:11:50] 2025-12-14 10:11:11,196 | INFO     | mean y: 2583426.127371274
[2025-12-14 05:11:50] 2025-12-14 10:11:11,196 | INFO     | intersect: 9405044667.44124
[2025-12-14 05:11:50] 2025-12-14 10:11:11,197 | INFO     | chi2: 1.8283797895751333
[2025-12-14 05:11:50] 2025-12-14 10:11:11,197 | INFO     | current chi2=1.8283797895751333 (change=2.682861373684696 %)
[2025-12-14 05:11:50] 2025-12-14 10:11:11,197 | INFO     | left removable region: 20
[2025-12-14 05:11:50] 2025-12-14 10:11:11,198 | INFO     | sum of square deviations: 13068650309.479855
[2025-12-14 05:11:50] 2025-12-14 10:11:11,219 | INFO     | sum of deviations: -4679357446.479873
[2025-12-14 05:11:50] 2025-12-14 10:11:11,219 | INFO     | mean x: 1765695731.3994253
[2025-12-14 05:11:50] 2025-12-14 10:11:11,219 | INFO     | mean y: 2588541.6005747127
[2025-12-14 05:11:50] 2025-12-14 10:11:11,219 | INFO     | intersect: 634813084.554963
[2025-12-14 05:11:50] 2025-12-14 10:11:11,220 | INFO     | chi2: 0.15393510648301803
[2025-12-14 05:11:50] 2025-12-14 10:11:11,220 | INFO     | current memory leak: -0.36 B/s (using 348 data points, chi2=0.15)
[2025-12-14 05:11:50] 2025-12-14 10:11:11,221 | INFO     | could have reported an average CPU frequency of 2914 MHz (16 samples)
[2025-12-14 05:11:50] 2025-12-14 10:11:11,221 | INFO     | ..............................
[2025-12-14 05:11:50] 2025-12-14 10:11:11,221 | INFO     | . Timing measurements:
[2025-12-14 05:11:50] 2025-12-14 10:11:11,221 | INFO     | . get job = 0 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,239 | INFO     | . initial setup = 5 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,240 | INFO     | . payload setup = 51 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,240 | INFO     | . stage-in = 0 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,240 | INFO     | . payload execution = 23136 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,240 | INFO     | . stage-out = 4 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,240 | INFO     | . log creation = 0 s
[2025-12-14 05:11:50] 2025-12-14 10:11:11,240 | INFO     | ..............................
[2025-12-14 05:11:50] 2025-12-14 10:11:12,649 | INFO     | 
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | job summary report
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | --------------------------------------------------
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | PanDA job id: 6929218688
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | task id: 47898836
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | errors: (none)
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | pilot state: finished 
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | transexitcode: 0
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | exeerrorcode: 0
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | exeerrordiag: 
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | exitcode: 0
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | exitmsg: OK
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | cpuconsumptiontime: 55339 s
[2025-12-14 05:11:50] 2025-12-14 10:11:12,650 | INFO     | nevents: 400
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | neventsw: 0
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | pid: 3699333
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | pgrp: 3699333
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | corecount: 10
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | event service: False
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | sizes: {0: 2283829, 1: 2284028, 2: 2284028, 12: 2284056, 24: 2284084, 34: 2284112, 36: 2284530, 45: 2284558, 23193: 2319179, 23199: 2328233, 23235: 2328371}
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | --------------------------------------------------
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | 
[2025-12-14 05:11:50] 2025-12-14 10:11:12,651 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-14 05:11:50] 2025-12-14 10:11:13,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,005 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,005 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,005 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 05:11:50] 2025-12-14 10:11:13,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 05:11:50] 2025-12-14 10:11:13,007 | INFO     | job 6929218688 has completed (purged errors)
[2025-12-14 05:11:50] 2025-12-14 10:11:13,007 | INFO     | overall cleanup function is called
[2025-12-14 05:11:50] 2025-12-14 10:11:14,085 | INFO     | --- collectZombieJob: --- 10, [3699333]
[2025-12-14 05:11:50] 2025-12-14 10:11:14,086 | INFO     | zombie collector waiting for pid 3699333
[2025-12-14 05:11:50] 2025-12-14 10:11:14,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 05:11:50] 2025-12-14 10:11:14,086 | INFO     | collected zombie processes
[2025-12-14 05:11:50] 2025-12-14 10:11:14,086 | INFO     | will attempt to kill all subprocesses of pid=3699333
[2025-12-14 05:11:50] 2025-12-14 10:11:14,732 | INFO     | PID=3690186 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 05:11:50] 2025-12-14 10:11:14,733 | INFO     | .. there are 18 such processes running
[2025-12-14 05:11:50] 2025-12-14 10:11:15,407 | INFO     | process IDs to be killed: [3699333] (in reverse order)
[2025-12-14 05:11:50] 2025-12-14 10:11:16,401 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 05:11:50] 2025-12-14 10:11:16,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 05:11:50] 2025-12-14 10:11:16,428 | INFO     | did not find any defunct processes belonging to 3699333
[2025-12-14 05:11:50] 2025-12-14 10:11:16,451 | INFO     | did not find any defunct processes belonging to 3699333
[2025-12-14 05:11:50] 2025-12-14 10:11:16,452 | INFO     | ready for new job
[2025-12-14 05:11:50] 2025-12-14 10:11:16,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 05:11:50] 2025-12-14 10:11:16,458 | INFO     | ***************************************
[2025-12-14 05:11:50] 2025-12-14 10:11:16,458 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 05:11:50] 2025-12-14 10:11:16,459 | INFO     | ***************************************
[2025-12-14 05:11:50] 2025-12-14 10:11:16,459 | INFO     | 
[2025-12-14 05:11:50] 2025-12-14 10:11:16,472 | INFO     | architecture information:
[2025-12-14 05:11:50] 2025-12-14 10:11:16,496 | INFO     | executing command: cat /etc/os-release
[2025-12-14 05:11:50] 2025-12-14 10:11:16,564 | INFO     | cat /etc/os-release:
[2025-12-14 05:11:50] NAME="CentOS Linux"
[2025-12-14 05:11:50] VERSION="7 (Core)"
[2025-12-14 05:11:50] ID="centos"
[2025-12-14 05:11:50] ID_LIKE="rhel fedora"
[2025-12-14 05:11:50] VERSION_ID="7"
[2025-12-14 05:11:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 05:11:50] ANSI_COLOR="0;31"
[2025-12-14 05:11:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 05:11:50] HOME_URL="https://www.centos.org/"
[2025-12-14 05:11:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 05:11:50] 
[2025-12-14 05:11:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 05:11:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 05:11:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 05:11:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 05:11:50] 
[2025-12-14 05:11:50] 2025-12-14 10:11:16,565 | INFO     | ***************************************
[2025-12-14 05:11:50] 2025-12-14 10:11:17,068 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-14 05:11:50] 2025-12-14 10:11:17,224 | INFO     | sufficient remaining disk space (74636591104 B)
[2025-12-14 05:11:50] 2025-12-14 10:11:17,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 05:11:50] 2025-12-14 10:11:17,224 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 05:11:50] 2025-12-14 10:11:17,224 | INFO     | update_server=False
[2025-12-14 05:11:50] 2025-12-14 10:11:17,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 05:11:50] 2025-12-14 10:11:17,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:11:50] 2025-12-14 10:11:17,246 | INFO     | aborting loop
[2025-12-14 05:11:50] 2025-12-14 10:11:17,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 05:11:50] 2025-12-14 10:11:17,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:11:50] 2025-12-14 10:11:17,833 | INFO     | all payload control threads have been joined
[2025-12-14 05:11:50] 2025-12-14 10:11:18,167 | INFO     | all job control threads have been joined
[2025-12-14 05:11:50] 2025-12-14 10:11:18,175 | INFO     | all data control threads have been joined
[2025-12-14 05:11:50] 2025-12-14 10:11:18,237 | INFO     | [job] retrieve thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,278 | INFO     | [job] job monitor thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,399 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,490 | INFO     | [job] queue monitor thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,822 | INFO     | [payload] validate_post thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,846 | INFO     | [payload] control thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,978 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,979 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,986 | INFO     | [job] validate thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,993 | INFO     | [data] copytool_in thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:18,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 05:11:50] 2025-12-14 10:11:19,042 | INFO     | [payload] failed_post thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:19,151 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:19,186 | INFO     | [data] control thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:19,197 | INFO     | [job] control thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:19,299 | INFO     | [data] copytool_out thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:20,460 | INFO     | [monitor] cgroup control has ended
[2025-12-14 05:11:50] 2025-12-14 10:11:23,027 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 05:11:50] 2025-12-14 10:11:23,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672856631104)>', '<ExcThread(monitor, started 140672510187264)>']
[2025-12-14 05:11:50] 2025-12-14 10:11:28,139 | INFO     | all workflow threads have been joined
[2025-12-14 05:11:50] 2025-12-14 10:11:28,139 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 05:11:50] 2025-12-14 10:11:28,140 | INFO     | traces error code: 0
[2025-12-14 05:11:50] 2025-12-14 10:11:28,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 05:11:50] 2025-12-14 10:11:47,582 | INFO     | PID=3690186 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 05:11:50] 2025-12-14 10:11:47,583 | INFO     | .. there are 18 such processes running
[2025-12-14 05:11:50] 2025-12-14 10:11:47,583 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 05:11:50] 2025-12-14 10:11:47,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 05:11:50] 2025-12-14 10:11:47,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 05:11:50] 2025-12-14 10:11:47,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 05:11:50] 2025-12-14 10:11:47,584 | CRITICAL | thread 'MainThread' is not alive
[2025-12-14 05:11:50] 2025-12-14 10:11:47,584 | INFO     | [monitor] control thread has ended
[2025-12-14 05:11:50] 2025-12-14 10:11:48,092 [wrapper] ==== pilot stdout END ====
[2025-12-14 05:11:50] 2025-12-14 10:11:48,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 05:11:50] 2025-12-14 10:11:48,097 [wrapper] pilotpid: 3690186
[2025-12-14 05:11:50] 2025-12-14 10:11:48,099 [wrapper] Pilot exit status: 0
[2025-12-14 05:11:50] 2025-12-14 10:11:48,206 [wrapper] pandaids: 6929218688
[2025-12-14 05:11:50] 2025-12-14 10:11:49,268 [wrapper] cleanup supervisor_pilot  612829 3690187
[2025-12-14 05:11:50] 2025-12-14 10:11:49,303 [wrapper] Test setup, not cleaning
[2025-12-14 05:11:50] 2025-12-14 10:11:49,330 [wrapper] apfmon messages muted
[2025-12-14 05:11:50] 2025-12-14 10:11:49,360 [wrapper] ==== wrapper stdout END ====
[2025-12-14 05:11:50] 2025-12-14 10:11:49,420 [wrapper] ==== wrapper stderr END ====
[2025-12-14 05:11:50]  *** Error codes and diagnostics ***
[2025-12-14 05:11:50]     "exeErrorCode": 0,
[2025-12-14 05:11:50]     "exeErrorDiag": "",
[2025-12-14 05:11:50]     "pilotErrorCode": 0,
[2025-12-14 05:11:50]     "pilotErrorDiag": "",
[2025-12-14 05:11:50]  *** Listing of results directory ***
[2025-12-14 05:11:50] total 410084
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:48 pilot3.tar.gz
[2025-12-14 05:11:50] -rwx------. 1 boincer umatlas     36322 Dec 13 03:48 runpilot2-wrapper.sh
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 03:48 queuedata.json
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas       100 Dec 13 22:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 05:11:50] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 22:41 run_atlas
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas       105 Dec 13 22:41 job.xml
[2025-12-14 05:11:50] -rw-r--r--. 2 boincer umatlas 215111948 Dec 13 22:41 EVNT.47898833._000010.pool.root.1
[2025-12-14 05:11:50] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 22:41 start_atlas.sh
[2025-12-14 05:11:50] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 22:41 shared
[2025-12-14 05:11:50] -rw-r--r--. 2 boincer umatlas    592384 Dec 13 22:41 input.tar.gz
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas         0 Dec 13 22:41 boinc_lockfile
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas      2546 Dec 13 22:41 pandaJob.out
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas        57 Dec 13 22:41 setup.sh.local
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas    991736 Dec 13 22:42 agis_schedconf.cvmfs.json
[2025-12-14 05:11:50] drwx------. 5 boincer umatlas      4096 Dec 13 22:42 pilot3
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas 193916778 Dec 14 05:08 HITS.47898836._000249.pool.root.1
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas       531 Dec 14 05:08 boinc_task_state.xml
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas      6843 Dec 14 05:09 init_data.xml
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas      1040 Dec 14 05:10 memory_monitor_summary.json
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas   1516240 Dec 14 05:10 agis_ddmendpoints.agis.ALL.json
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas    610083 Dec 14 05:10 log.47898836._000249.job.log.tgz.1
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas        95 Dec 14 05:10 pilot_heartbeat.json
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas      7816 Dec 14 05:11 heartbeat.json
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 05:11 boinc_mmap_file
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas        28 Dec 14 05:11 wrapper_checkpoint.txt
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas       893 Dec 14 05:11 pilotlog.txt
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas   2881362 Dec 14 05:11 log.47898836._000249.job.log.1
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas       357 Dec 14 05:11 output.list
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas       620 Dec 14 05:11 runtime_log
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas   3512320 Dec 14 05:11 result.tar.gz
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas      9345 Dec 14 05:11 runtime_log.err
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas       657 Dec 14 05:11 LkuNDmkTao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhHSKDmjw6dSo.diag
[2025-12-14 05:11:50] -rw-r--r--. 1 boincer umatlas     21300 Dec 14 05:11 stderr.txt
[2025-12-14 05:11:50] HITS file was successfully produced:
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas 193916778 Dec 14 05:08 shared/HITS.pool.root.1
[2025-12-14 05:11:50]  *** Contents of shared directory: ***
[2025-12-14 05:11:50] total 403476
[2025-12-14 05:11:50] -rw-r--r--. 2 boincer umatlas 215111948 Dec 13 22:41 ATLAS.root_0
[2025-12-14 05:11:50] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 22:41 start_atlas.sh
[2025-12-14 05:11:50] -rw-r--r--. 2 boincer umatlas    592384 Dec 13 22:41 input.tar.gz
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas 193916778 Dec 14 05:08 HITS.pool.root.1
[2025-12-14 05:11:50] -rw-------. 1 boincer umatlas   3512320 Dec 14 05:11 result.tar.gz
05:11:52 (3683775): run_atlas exited; CPU time 56039.067056
05:11:52 (3683775): called boinc_finish(0)

</stderr_txt>
]]>

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