Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:34:17 (21266): wrapper (7.7.26015): starting
21:34:17 (21266): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 21:34:17] Arguments: --nthreads 12
[2025-12-13 21:34:17] Threads: 12
[2025-12-13 21:34:17] Checking for CVMFS
[2025-12-13 21:34:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 21:34:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 21:34:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 21:34:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 21:34:17] 2.11.2.0 2945 313008 95164 153980 0 56 14700719 20275200 1 130560 2 137903532 99.963 18450502 15443 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 21:34:17] CVMFS is ok
[2025-12-13 21:34:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 21:34:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 21:34:17] Further information can be found at the LHC@home message board.
[2025-12-13 21:34:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 21:34:17] Checking for apptainer binary...
[2025-12-13 21:34:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 21:34:17] Running /usr/bin/apptainer --version
[2025-12-13 21:34:17] apptainer version 1.3.2-1.el7
[2025-12-13 21:34:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 21:34:19] c-205-2.aglt2.org
[2025-12-13 21:34:19] apptainer works
[2025-12-13 21:34:19] Set ATHENA_PROC_NUMBER=12
[2025-12-13 21:34:19] Set ATHENA_CORE_NUMBER=12
[2025-12-13 21:34:19] Starting ATLAS job with PandaID=6929262133
[2025-12-13 21:34:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 23:12:05]  *** The last 200 lines of the pilot log: ***
[2025-12-13 23:12:05]  protocol_id=None
[2025-12-13 23:12:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 23:12:05]  replicas=None
[2025-12-13 23:12:05]  scope=mc23_13p6TeV
[2025-12-13 23:12:05]  status=None
[2025-12-13 23:12:05]  status_code=0
[2025-12-13 23:12:05]  storage_token=
[2025-12-13 23:12:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929262133/log.47898763._000926.job.log.tgz.1
[2025-12-13 23:12:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/ef/log.47898763._000926.job.log.tgz.1
[2025-12-13 23:12:05]  workdir=None
[2025-12-13 23:12:05] ]
[2025-12-13 23:12:05] 2025-12-14 04:11:24,619 | INFO     | transferring file log.47898763._000926.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929262133/log.47898763._000926.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 23:12:05] 2025-12-14 04:11:24,619 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929262133/log.47898763._000926.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._000926.job
[2025-12-13 23:12:05] 2025-12-14 04:11:24,642 | INFO     | adding to output.list: log.47898763._000926.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/ef/log.47898763._000926.job.log.tg
[2025-12-13 23:12:05] 2025-12-14 04:11:24,643 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 23:12:05] 2025-12-14 04:11:24,643 | INFO     | summary of transferred files:
[2025-12-13 23:12:05] 2025-12-14 04:11:24,643 | INFO     |  -- lfn=log.47898763._000926.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 23:12:05] 2025-12-14 04:11:24,643 | INFO     | stage-out finished correctly
[2025-12-13 23:12:05] 2025-12-14 04:11:25,768 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 23:12:05] 2025-12-14 04:11:26,474 | INFO     | time since job start (5812s) is within the limit (174528.0s)
[2025-12-13 23:12:05] 2025-12-14 04:11:28,479 | INFO     | time since job start (5814s) is within the limit (174528.0s)
[2025-12-13 23:12:05] 2025-12-14 04:11:28,603 | INFO     | job 6929262133 has state=finished
[2025-12-13 23:12:05] 2025-12-14 04:11:28,603 | INFO     | preparing for final server update for job 6929262133 in state='finished'
[2025-12-13 23:12:05] 2025-12-14 04:11:28,604 | INFO     | this job has now completed (state=finished)
[2025-12-13 23:12:05] 2025-12-14 04:11:28,604 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 23:12:05] 2025-12-14 04:11:28,605 | INFO     | log transfer has been attempted: DONE
[2025-12-13 23:12:05] 2025-12-14 04:11:28,605 | INFO     | job 6929262133 has finished - writing final server update
[2025-12-13 23:12:05] 2025-12-14 04:11:28,605 | INFO     | total number of processed events: 400 (read)
[2025-12-13 23:12:05] 2025-12-14 04:11:28,689 | INFO     | executing command: lscpu
[2025-12-13 23:12:05] 2025-12-14 04:11:28,726 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 23:12:05] 2025-12-14 04:11:29,302 | WARNING  | process 31330 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 23:12:05] 2025-12-14 04:11:29,302 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929262133/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 23:12:05] 2025-12-14 04:11:29,404 | INFO     | number of running child processes to parent process 31330: 1
[2025-12-13 23:12:05] 2025-12-14 04:11:29,405 | INFO     | maximum number of monitored processes: 6
[2025-12-13 23:12:05] 2025-12-14 04:11:30,484 | INFO     | time since job start (5816s) is within the limit (174528.0s)
[2025-12-13 23:12:05] 2025-12-14 04:11:31,908 | INFO     | monitor loop #429: job 0:6929262133 is in state 'finished'
[2025-12-13 23:12:05] 2025-12-14 04:11:31,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 23:12:05] 2025-12-14 04:11:32,491 | INFO     | time since job start (5818s) is within the limit (174528.0s)
[2025-12-13 23:12:05] 2025-12-14 04:11:33,596 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 23:12:05] 2025-12-14 04:11:33,600 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-13 23:12:05] 2025-12-14 04:11:33,602 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929262133/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 23:12:05] 2025-12-14 04:11:33,603 | INFO     | extracted standard info from prmon json
[2025-12-13 23:12:05] 2025-12-14 04:11:33,603 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 23:12:05] 2025-12-14 04:11:33,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 23:12:05] 2025-12-14 04:11:33,604 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 23:12:05] 2025-12-14 04:11:33,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 23:12:05] 2025-12-14 04:11:33,606 | INFO     | fitting pss+swap vs Time
[2025-12-13 23:12:05] 2025-12-14 04:11:33,606 | INFO     | sum of square deviations: 211285822.0
[2025-12-13 23:12:05] 2025-12-14 04:11:33,607 | INFO     | sum of deviations: -10901787569.0
[2025-12-13 23:12:05] 2025-12-14 04:11:33,607 | INFO     | mean x: 1765682661.5
[2025-12-13 23:12:05] 2025-12-14 04:11:33,607 | INFO     | mean y: 2756251.840909091
[2025-12-13 23:12:05] 2025-12-14 04:11:33,607 | INFO     | intersect: 91107294681.01924
[2025-12-13 23:12:05] 2025-12-14 04:11:33,607 | INFO     | chi2: 0.09862567053467007
[2025-12-13 23:12:05] 2025-12-14 04:11:33,607 | INFO     | current memory leak: -51.60 B/s (using 88 data points, chi2=0.10)
[2025-12-13 23:12:05] 2025-12-14 04:11:33,608 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-12-13 23:12:05] 2025-12-14 04:11:33,608 | INFO     | ..............................
[2025-12-13 23:12:05] 2025-12-14 04:11:33,608 | INFO     | . Timing measurements:
[2025-12-13 23:12:05] 2025-12-14 04:11:33,608 | INFO     | . get job = 0 s
[2025-12-13 23:12:05] 2025-12-14 04:11:33,608 | INFO     | . initial setup = 2 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,608 | INFO     | . payload setup = 7 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,608 | INFO     | . stage-in = 0 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,608 | INFO     | . payload execution = 5782 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,608 | INFO     | . stage-out = 0 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,609 | INFO     | . log creation = 0 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,609 | INFO     | ..............................
[2025-12-13 23:12:06] 2025-12-14 04:11:33,866 | INFO     | 
[2025-12-13 23:12:06] 2025-12-14 04:11:33,867 | INFO     | job summary report
[2025-12-13 23:12:06] 2025-12-14 04:11:33,872 | INFO     | --------------------------------------------------
[2025-12-13 23:12:06] 2025-12-14 04:11:33,872 | INFO     | PanDA job id: 6929262133
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | task id: 47898763
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | errors: (none)
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | pilot state: finished 
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | transexitcode: 0
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | exeerrorcode: 0
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | exeerrordiag: 
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | exitcode: 0
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | exitmsg: OK
[2025-12-13 23:12:06] 2025-12-14 04:11:33,873 | INFO     | cpuconsumptiontime: 64333 s
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | nevents: 400
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | neventsw: 0
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | pid: 31330
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | pgrp: 31330
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | corecount: 12
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | event service: False
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | sizes: {0: 2283714, 1: 2283969, 6: 2284231, 12: 2284259, 5793: 2310918, 5794: 2310917, 5795: 2320099, 5796: 2320155, 5804: 2320349}
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | --------------------------------------------------
[2025-12-13 23:12:06] 2025-12-14 04:11:33,874 | INFO     | 
[2025-12-13 23:12:06] 2025-12-14 04:11:33,875 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 23:12:06] 2025-12-14 04:11:33,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,901 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,901 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,903 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 23:12:06] 2025-12-14 04:11:33,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,904 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 23:12:06] 2025-12-14 04:11:33,904 | INFO     | job 6929262133 has completed (purged errors)
[2025-12-13 23:12:06] 2025-12-14 04:11:33,904 | INFO     | overall cleanup function is called
[2025-12-13 23:12:06] 2025-12-14 04:11:34,912 | INFO     | --- collectZombieJob: --- 10, [31330]
[2025-12-13 23:12:06] 2025-12-14 04:11:34,913 | INFO     | zombie collector waiting for pid 31330
[2025-12-13 23:12:06] 2025-12-14 04:11:34,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 23:12:06] 2025-12-14 04:11:34,913 | INFO     | collected zombie processes
[2025-12-13 23:12:06] 2025-12-14 04:11:34,914 | INFO     | will attempt to kill all subprocesses of pid=31330
[2025-12-13 23:12:06] 2025-12-14 04:11:35,005 | INFO     | process IDs to be killed: [31330] (in reverse order)
[2025-12-13 23:12:06] 2025-12-14 04:11:35,056 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 23:12:06] 2025-12-14 04:11:35,056 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 23:12:06] 2025-12-14 04:11:35,060 | INFO     | did not find any defunct processes belonging to 31330
[2025-12-13 23:12:06] 2025-12-14 04:11:35,062 | INFO     | did not find any defunct processes belonging to 31330
[2025-12-13 23:12:06] 2025-12-14 04:11:35,063 | INFO     | ready for new job
[2025-12-13 23:12:06] 2025-12-14 04:11:35,063 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 23:12:06] 2025-12-14 04:11:35,064 | INFO     | ***************************************
[2025-12-13 23:12:06] 2025-12-14 04:11:35,064 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 23:12:06] 2025-12-14 04:11:35,064 | INFO     | ***************************************
[2025-12-13 23:12:06] 2025-12-14 04:11:35,065 | INFO     | 
[2025-12-13 23:12:06] 2025-12-14 04:11:35,065 | INFO     | architecture information:
[2025-12-13 23:12:06] 2025-12-14 04:11:35,066 | INFO     | executing command: cat /etc/os-release
[2025-12-13 23:12:06] 2025-12-14 04:11:35,081 | INFO     | cat /etc/os-release:
[2025-12-13 23:12:06] NAME="CentOS Linux"
[2025-12-13 23:12:06] VERSION="7 (Core)"
[2025-12-13 23:12:06] ID="centos"
[2025-12-13 23:12:06] ID_LIKE="rhel fedora"
[2025-12-13 23:12:06] VERSION_ID="7"
[2025-12-13 23:12:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 23:12:06] ANSI_COLOR="0;31"
[2025-12-13 23:12:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 23:12:06] HOME_URL="https://www.centos.org/"
[2025-12-13 23:12:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 23:12:06] 
[2025-12-13 23:12:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 23:12:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 23:12:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 23:12:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 23:12:06] 
[2025-12-13 23:12:06] 2025-12-14 04:11:35,082 | INFO     | ***************************************
[2025-12-13 23:12:06] 2025-12-14 04:11:35,585 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 23:12:06] 2025-12-14 04:11:35,603 | INFO     | sufficient remaining disk space (29379002368 B)
[2025-12-13 23:12:06] 2025-12-14 04:11:35,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 23:12:06] 2025-12-14 04:11:35,603 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 23:12:06] 2025-12-14 04:11:35,603 | INFO     | update_server=False
[2025-12-13 23:12:06] 2025-12-14 04:11:35,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 23:12:06] 2025-12-14 04:11:35,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 23:12:06] 2025-12-14 04:11:35,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 23:12:06] 2025-12-14 04:11:35,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 23:12:06] 2025-12-14 04:11:35,605 | INFO     | aborting loop
[2025-12-13 23:12:06] 2025-12-14 04:11:36,055 | INFO     | all data control threads have been joined
[2025-12-13 23:12:06] 2025-12-14 04:11:36,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 23:12:06] 2025-12-14 04:11:36,609 | INFO     | [job] retrieve thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:36,611 | INFO     | [job] queue monitor thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:36,611 | INFO     | [job] job monitor thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:36,708 | INFO     | [payload] failed_post thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:36,880 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:37,020 | INFO     | all payload control threads have been joined
[2025-12-13 23:12:06] 2025-12-14 04:11:37,060 | INFO     | [data] control thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:37,139 | INFO     | all job control threads have been joined
[2025-12-13 23:12:06] 2025-12-14 04:11:37,289 | INFO     | [payload] validate_post thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:37,375 | INFO     | [data] copytool_in thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:37,509 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:37,610 | INFO     | [data] copytool_out thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:37,871 | INFO     | [job] validate thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:38,026 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:38,026 | INFO     | [payload] control thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:38,145 | INFO     | [job] control thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:40,364 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:42,853 | INFO     | [monitor] cgroup control has ended
[2025-12-13 23:12:06] 2025-12-14 04:11:46,161 | INFO     | job.realtimelogging is not enabled
[2025-12-13 23:12:06] 2025-12-14 04:11:47,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 23:12:06] 2025-12-14 04:11:48,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139726945310528)>', '<ExcThread(monitor, started 139726283597568)>']
[2025-12-13 23:12:06] 2025-12-14 04:11:53,467 | INFO     | all workflow threads have been joined
[2025-12-13 23:12:06] 2025-12-14 04:11:53,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 23:12:06] 2025-12-14 04:11:53,468 | INFO     | traces error code: 0
[2025-12-13 23:12:06] 2025-12-14 04:11:53,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 23:12:06] 2025-12-14 04:12:05,678 | INFO     | PID=24953 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 23:12:06] 2025-12-14 04:12:05,680 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 23:12:06] 2025-12-14 04:12:05,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 23:12:06] 2025-12-14 04:12:05,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 23:12:06] 2025-12-14 04:12:05,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 23:12:06] 2025-12-14 04:12:05,680 | INFO     | [monitor] control thread has ended
[2025-12-13 23:12:06] 2025-12-14 04:12:05,779 [wrapper] ==== pilot stdout END ====
[2025-12-13 23:12:06] 2025-12-14 04:12:05,783 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 23:12:06] 2025-12-14 04:12:05,787 [wrapper] pilotpid: 24953
[2025-12-13 23:12:06] 2025-12-14 04:12:05,791 [wrapper] Pilot exit status: 0
[2025-12-13 23:12:06] 2025-12-14 04:12:05,806 [wrapper] pandaids: 6929262133
[2025-12-13 23:12:06] 2025-12-14 04:12:05,848 [wrapper] cleanup supervisor_pilot 32070 24954
[2025-12-13 23:12:06] 2025-12-14 04:12:05,852 [wrapper] Test setup, not cleaning
[2025-12-13 23:12:06] 2025-12-14 04:12:05,856 [wrapper] apfmon messages muted
[2025-12-13 23:12:06] 2025-12-14 04:12:05,860 [wrapper] ==== wrapper stdout END ====
[2025-12-13 23:12:06] 2025-12-14 04:12:05,864 [wrapper] ==== wrapper stderr END ====
[2025-12-13 23:12:06]  *** Error codes and diagnostics ***
[2025-12-13 23:12:06]     "exeErrorCode": 0,
[2025-12-13 23:12:06]     "exeErrorDiag": "",
[2025-12-13 23:12:06]     "pilotErrorCode": 0,
[2025-12-13 23:12:06]     "pilotErrorDiag": "",
[2025-12-13 23:12:06]  *** Listing of results directory ***
[2025-12-13 23:12:06] total 444188
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 23:12:06] -rwx------ 1 boincer umatlas     36322 Dec 13 04:38 runpilot2-wrapper.sh
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:38 queuedata.json
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas       100 Dec 13 21:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 23:12:06] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 21:34 run_atlas
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas       105 Dec 13 21:34 job.xml
[2025-12-13 23:12:06] -rw-r--r-- 2 boincer umatlas 225892436 Dec 13 21:34 EVNT.47898761._000038.pool.root.1
[2025-12-13 23:12:06] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 21:34 start_atlas.sh
[2025-12-13 23:12:06] drwxrwx--x 2 boincer umatlas      4096 Dec 13 21:34 shared
[2025-12-13 23:12:06] -rw-r--r-- 2 boincer umatlas    592387 Dec 13 21:34 input.tar.gz
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas         0 Dec 13 21:34 boinc_lockfile
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas      2499 Dec 13 21:34 pandaJob.out
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas        57 Dec 13 21:34 setup.sh.local
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas    991736 Dec 13 21:34 agis_schedconf.cvmfs.json
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas   1516240 Dec 13 21:34 agis_ddmendpoints.agis.ALL.json
[2025-12-13 23:12:06] drwx------ 5 boincer umatlas      4096 Dec 13 21:34 pilot3
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas      5951 Dec 13 23:09 init_data.xml
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas 222603335 Dec 13 23:10 HITS.47898763._000926.pool.root.1
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas       529 Dec 13 23:11 boinc_task_state.xml
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas      1046 Dec 13 23:11 memory_monitor_summary.json
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas    387075 Dec 13 23:11 log.47898763._000926.job.log.tgz.1
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas      7837 Dec 13 23:11 heartbeat.json
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 23:11 boinc_mmap_file
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas        27 Dec 13 23:11 wrapper_checkpoint.txt
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas       745 Dec 13 23:12 pilotlog.txt
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas        95 Dec 13 23:12 pilot_heartbeat.json
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas    828221 Dec 13 23:12 log.47898763._000926.job.log.1
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas       357 Dec 13 23:12 output.list
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas       620 Dec 13 23:12 runtime_log
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas   1239040 Dec 13 23:12 result.tar.gz
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 23:12 runtime_log.err
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas       658 Dec 13 23:12 QvqMDmBGbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHeSKDmrIKx9m.diag
[2025-12-13 23:12:06] -rw-r--r-- 1 boincer umatlas     21841 Dec 13 23:12 stderr.txt
[2025-12-13 23:12:06] HITS file was successfully produced:
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas 222603335 Dec 13 23:10 shared/HITS.pool.root.1
[2025-12-13 23:12:06]  *** Contents of shared directory: ***
[2025-12-13 23:12:06] total 439800
[2025-12-13 23:12:06] -rw-r--r-- 2 boincer umatlas 225892436 Dec 13 21:34 ATLAS.root_0
[2025-12-13 23:12:06] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 21:34 start_atlas.sh
[2025-12-13 23:12:06] -rw-r--r-- 2 boincer umatlas    592387 Dec 13 21:34 input.tar.gz
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas 222603335 Dec 13 23:10 HITS.pool.root.1
[2025-12-13 23:12:06] -rw------- 1 boincer umatlas   1239040 Dec 13 23:12 result.tar.gz
23:12:07 (21266): run_atlas exited; CPU time 64311.585430
23:12:07 (21266): called boinc_finish(0)

</stderr_txt>
]]>

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