Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:03 (197059): wrapper (7.7.26015): starting
00:05:03 (197059): wrapper: running run_atlas (--nthreads 12)
[2025-12-14 00:05:03] Arguments: --nthreads 12
[2025-12-14 00:05:03] Threads: 12
[2025-12-14 00:05:03] Checking for CVMFS
[2025-12-14 00:05:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 00:05:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 00:05:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 00:05:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 00:05:07] 2.13.3.0 11601 55526 339128 153984 0 369 28267343 32935936 20248 16776704 0 199247016 99.440 288597107 38710 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-14 00:05:07] CVMFS is ok
[2025-12-14 00:05:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:05:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:05:07] Further information can be found at the LHC@home message board.
[2025-12-14 00:05:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:05:07] Checking for apptainer binary...
[2025-12-14 00:05:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 00:05:07] Running /usr/bin/apptainer --version
[2025-12-14 00:05:07] apptainer version 1.4.5-2.el9
[2025-12-14 00:05:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:05:07] c6-6-39-4.aglt2.org
[2025-12-14 00:05:07] apptainer works
[2025-12-14 00:05:07] Set ATHENA_PROC_NUMBER=12
[2025-12-14 00:05:07] Set ATHENA_CORE_NUMBER=12
[2025-12-14 00:05:08] Starting ATLAS job with PandaID=6929300615
[2025-12-14 00:05:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 07:50:32]  *** The last 200 lines of the pilot log: ***
[2025-12-14 07:50:32] 2025-12-14 12:49:51,551 | INFO     | monitor loop #1519: job 0:6929300615 is in state 'finished'
[2025-12-14 07:50:32] 2025-12-14 12:49:51,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:50:32] 2025-12-14 12:49:51,582 | INFO     | time since job start (27799s) is within the limit (174528.0s)
[2025-12-14 07:50:32] 2025-12-14 12:49:53,590 | INFO     | time since job start (27801s) is within the limit (174528.0s)
[2025-12-14 07:50:32] 2025-12-14 12:49:54,059 | INFO     | monitor loop #1520: job 0:6929300615 is in state 'finished'
[2025-12-14 07:50:32] 2025-12-14 12:49:54,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,597 | INFO     | time since job start (27803s) is within the limit (174528.0s)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,802 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 07:50:32] 2025-12-14 12:49:55,806 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2927.4810892857126
[2025-12-14 07:50:32] 2025-12-14 12:49:55,818 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929300615/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,819 | INFO     | extracted standard info from prmon json
[2025-12-14 07:50:32] 2025-12-14 12:49:55,819 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 07:50:32] 2025-12-14 12:49:55,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 07:50:32] 2025-12-14 12:49:55,819 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 07:50:32] 2025-12-14 12:49:55,819 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 07:50:32] 2025-12-14 12:49:55,825 | INFO     | fitting pss+swap vs Time
[2025-12-14 07:50:32] 2025-12-14 12:49:55,826 | INFO     | sum of square deviations: 29015921306.434002
[2025-12-14 07:50:32] 2025-12-14 12:49:55,830 | INFO     | sum of deviations: 142843786424.7752
[2025-12-14 07:50:32] 2025-12-14 12:49:55,830 | INFO     | mean x: 1765702737.548458
[2025-12-14 07:50:32] 2025-12-14 12:49:55,831 | INFO     | mean y: 2679431.9647577093
[2025-12-14 07:50:32] 2025-12-14 12:49:55,831 | INFO     | intersect: -8689778135.32557
[2025-12-14 07:50:32] 2025-12-14 12:49:55,831 | INFO     | chi2: 2.8240299775662865
[2025-12-14 07:50:32] 2025-12-14 12:49:55,832 | INFO     | sum of square deviations: 28067807484.71701
[2025-12-14 07:50:32] 2025-12-14 12:49:55,836 | INFO     | sum of deviations: 171623020585.18045
[2025-12-14 07:50:32] 2025-12-14 12:49:55,836 | INFO     | mean x: 1765702585.053452
[2025-12-14 07:50:32] 2025-12-14 12:49:55,836 | INFO     | mean y: 2684016.3674832964
[2025-12-14 07:50:32] 2025-12-14 12:49:55,836 | INFO     | intersect: -10793856157.528833
[2025-12-14 07:50:32] 2025-12-14 12:49:55,837 | INFO     | chi2: 2.125821059427064
[2025-12-14 07:50:32] 2025-12-14 12:49:55,837 | INFO     | current chi2=2.125821059427064 (change=24.7238493814053 %)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,837 | INFO     | right removable region: 448
[2025-12-14 07:50:32] 2025-12-14 12:49:55,838 | INFO     | sum of square deviations: 28067600203.376392
[2025-12-14 07:50:32] 2025-12-14 12:49:55,842 | INFO     | sum of deviations: 42559902712.90871
[2025-12-14 07:50:32] 2025-12-14 12:49:55,842 | INFO     | mean x: 1765702890.0601337
[2025-12-14 07:50:32] 2025-12-14 12:49:55,842 | INFO     | mean y: 2695502.855233853
[2025-12-14 07:50:32] 2025-12-14 12:49:55,842 | INFO     | intersect: -2674702731.277412
[2025-12-14 07:50:32] 2025-12-14 12:49:55,843 | INFO     | chi2: 0.8598861212329478
[2025-12-14 07:50:32] 2025-12-14 12:49:55,843 | INFO     | current chi2=0.8598861212329478 (change=69.55109796766439 %)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,843 | INFO     | sum of square deviations: 27140190358.83572
[2025-12-14 07:50:32] 2025-12-14 12:49:55,847 | INFO     | sum of deviations: 23526818172.94368
[2025-12-14 07:50:32] 2025-12-14 12:49:55,847 | INFO     | mean x: 1765703042.56982
[2025-12-14 07:50:32] 2025-12-14 12:49:55,848 | INFO     | mean y: 2698635.921171171
[2025-12-14 07:50:32] 2025-12-14 12:49:55,848 | INFO     | intersect: -1527923437.126649
[2025-12-14 07:50:32] 2025-12-14 12:49:55,848 | INFO     | chi2: 0.7956262914897254
[2025-12-14 07:50:32] 2025-12-14 12:49:55,848 | INFO     | current chi2=0.7956262914897254 (change=7.473062787789092 %)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,848 | INFO     | left removable region: 20
[2025-12-14 07:50:32] 2025-12-14 12:49:55,849 | INFO     | sum of square deviations: 24310506798.299355
[2025-12-14 07:50:32] 2025-12-14 12:49:55,852 | INFO     | sum of deviations: 30550729259.691574
[2025-12-14 07:50:32] 2025-12-14 12:49:55,852 | INFO     | mean x: 1765703164.5794392
[2025-12-14 07:50:32] 2025-12-14 12:49:55,853 | INFO     | mean y: 2707318.464953271
[2025-12-14 07:50:32] 2025-12-14 12:49:55,853 | INFO     | intersect: -2216231175.1505194
[2025-12-14 07:50:32] 2025-12-14 12:49:55,853 | INFO     | chi2: 0.0035594598959443734
[2025-12-14 07:50:32] 2025-12-14 12:49:55,853 | INFO     | current memory leak: 1.26 B/s (using 428 data points, chi2=0.00)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,854 | INFO     | could have reported an average CPU frequency of 2943 MHz (19 samples)
[2025-12-14 07:50:32] 2025-12-14 12:49:55,854 | INFO     | ..............................
[2025-12-14 07:50:32] 2025-12-14 12:49:55,854 | INFO     | . Timing measurements:
[2025-12-14 07:50:32] 2025-12-14 12:49:55,854 | INFO     | . get job = 0 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,854 | INFO     | . initial setup = 8 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,854 | INFO     | . payload setup = 38 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,855 | INFO     | . stage-in = 0 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,855 | INFO     | . payload execution = 27663 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,855 | INFO     | . stage-out = 3 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,855 | INFO     | . log creation = 0 s
[2025-12-14 07:50:32] 2025-12-14 12:49:55,855 | INFO     | ..............................
[2025-12-14 07:50:32] 2025-12-14 12:49:56,239 | INFO     | 
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | job summary report
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | --------------------------------------------------
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | PanDA job id: 6929300615
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | task id: 47898763
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | errors: (none)
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | pilot state: finished 
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | transexitcode: 0
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | exeerrorcode: 0
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | exeerrordiag: 
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | exitcode: 0
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | exitmsg: OK
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | cpuconsumptiontime: 57609 s
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | nevents: 400
[2025-12-14 07:50:32] 2025-12-14 12:49:56,240 | INFO     | neventsw: 0
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | pid: 210251
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | pgrp: 210251
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | corecount: 12
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | event service: False
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | sizes: {0: 2283781, 1: 2283809, 2: 2283980, 12: 2284008, 23: 2284036, 32: 2284326, 34: 2284482, 27706: 2321104, 27711: 2330102, 27714: 2330158, 27743: 2330182}
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | --------------------------------------------------
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | 
[2025-12-14 07:50:32] 2025-12-14 12:49:56,241 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-14 07:50:32] 2025-12-14 12:49:56,344 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,344 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | job 6929300615 has completed (purged errors)
[2025-12-14 07:50:32] 2025-12-14 12:49:56,346 | INFO     | overall cleanup function is called
[2025-12-14 07:50:32] 2025-12-14 12:49:57,381 | INFO     | --- collectZombieJob: --- 10, [210251]
[2025-12-14 07:50:32] 2025-12-14 12:49:57,381 | INFO     | zombie collector waiting for pid 210251
[2025-12-14 07:50:32] 2025-12-14 12:49:57,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 07:50:32] 2025-12-14 12:49:57,382 | INFO     | collected zombie processes
[2025-12-14 07:50:32] 2025-12-14 12:49:57,382 | INFO     | will attempt to kill all subprocesses of pid=210251
[2025-12-14 07:50:32] 2025-12-14 12:49:58,056 | INFO     | process IDs to be killed: [210251] (in reverse order)
[2025-12-14 07:50:32] 2025-12-14 12:49:58,189 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 07:50:32] 2025-12-14 12:49:58,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 07:50:32] 2025-12-14 12:49:58,211 | INFO     | did not find any defunct processes belonging to 210251
[2025-12-14 07:50:32] 2025-12-14 12:49:58,304 | INFO     | did not find any defunct processes belonging to 210251
[2025-12-14 07:50:32] 2025-12-14 12:49:58,312 | INFO     | ready for new job
[2025-12-14 07:50:32] 2025-12-14 12:49:58,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 07:50:32] 2025-12-14 12:49:58,320 | INFO     | ***************************************
[2025-12-14 07:50:32] 2025-12-14 12:49:58,320 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 07:50:32] 2025-12-14 12:49:58,320 | INFO     | ***************************************
[2025-12-14 07:50:32] 2025-12-14 12:49:58,320 | INFO     | 
[2025-12-14 07:50:32] 2025-12-14 12:49:58,342 | INFO     | architecture information:
[2025-12-14 07:50:32] 2025-12-14 12:49:58,342 | INFO     | executing command: cat /etc/os-release
[2025-12-14 07:50:32] 2025-12-14 12:49:58,402 | INFO     | cat /etc/os-release:
[2025-12-14 07:50:32] NAME="CentOS Linux"
[2025-12-14 07:50:32] VERSION="7 (Core)"
[2025-12-14 07:50:32] ID="centos"
[2025-12-14 07:50:32] ID_LIKE="rhel fedora"
[2025-12-14 07:50:32] VERSION_ID="7"
[2025-12-14 07:50:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 07:50:32] ANSI_COLOR="0;31"
[2025-12-14 07:50:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 07:50:32] HOME_URL="https://www.centos.org/"
[2025-12-14 07:50:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 07:50:32] 
[2025-12-14 07:50:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 07:50:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 07:50:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 07:50:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 07:50:32] 
[2025-12-14 07:50:32] 2025-12-14 12:49:58,403 | INFO     | ***************************************
[2025-12-14 07:50:32] 2025-12-14 12:49:58,909 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-14 07:50:32] 2025-12-14 12:49:58,957 | INFO     | sufficient remaining disk space (75730255872 B)
[2025-12-14 07:50:32] 2025-12-14 12:49:58,957 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 07:50:32] 2025-12-14 12:49:58,958 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 07:50:32] 2025-12-14 12:49:58,958 | INFO     | update_server=False
[2025-12-14 07:50:32] 2025-12-14 12:49:58,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 07:50:32] 2025-12-14 12:49:59,098 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 07:50:32] 2025-12-14 12:49:59,102 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 07:50:32] 2025-12-14 12:49:59,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:50:32] 2025-12-14 12:49:59,103 | INFO     | will abort loop
[2025-12-14 07:50:32] 2025-12-14 12:49:59,135 | INFO     | all data control threads have been joined
[2025-12-14 07:50:32] 2025-12-14 12:49:59,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 07:50:32] 2025-12-14 12:49:59,967 | INFO     | [job] retrieve thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:49:59,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 07:50:32] 2025-12-14 12:49:59,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,108 | INFO     | [job] job monitor thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,129 | INFO     | all job control threads have been joined
[2025-12-14 07:50:32] 2025-12-14 12:50:00,141 | INFO     | [data] control thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,239 | INFO     | [job] validate thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,245 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,246 | INFO     | all payload control threads have been joined
[2025-12-14 07:50:32] 2025-12-14 12:50:00,378 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,445 | INFO     | [payload] failed_post thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,608 | INFO     | [payload] validate_post thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:00,937 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:01,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:50:32] 2025-12-14 12:50:01,135 | INFO     | [job] control thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:01,255 | INFO     | [payload] control thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:01,452 | INFO     | [data] copytool_in thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:01,980 | INFO     | [data] copytool_out thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:02,136 | INFO     | [job] queue monitor thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:03,769 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 07:50:32] 2025-12-14 12:50:25,015 | INFO     | [monitor] cgroup control has ended
[2025-12-14 07:50:32] 2025-12-14 12:50:25,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314994849600)>', '<ExcThread(monitor, started 140314350180096)>']
[2025-12-14 07:50:32] 2025-12-14 12:50:29,457 | INFO     | PID=201918 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 07:50:32] 2025-12-14 12:50:29,457 | INFO     | .. there are 18 such processes running
[2025-12-14 07:50:32] 2025-12-14 12:50:29,458 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 07:50:32] 2025-12-14 12:50:29,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 07:50:32] 2025-12-14 12:50:29,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 07:50:32] 2025-12-14 12:50:29,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 07:50:32] 2025-12-14 12:50:29,458 | INFO     | [monitor] control thread has ended
[2025-12-14 07:50:32] 2025-12-14 12:50:30,644 | INFO     | all workflow threads have been joined
[2025-12-14 07:50:32] 2025-12-14 12:50:30,644 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 07:50:32] 2025-12-14 12:50:30,645 | INFO     | traces error code: 0
[2025-12-14 07:50:32] 2025-12-14 12:50:30,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 07:50:32] 2025-12-14 12:50:30,921 [wrapper] ==== pilot stdout END ====
[2025-12-14 07:50:32] 2025-12-14 12:50:30,938 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 07:50:32] 2025-12-14 12:50:30,956 [wrapper] pilotpid: 201918
[2025-12-14 07:50:32] 2025-12-14 12:50:30,975 [wrapper] Pilot exit status: 0
[2025-12-14 07:50:32] 2025-12-14 12:50:31,082 [wrapper] pandaids: 6929300615
[2025-12-14 07:50:32] 2025-12-14 12:50:31,391 [wrapper] cleanup supervisor_pilot 1783743 201919
[2025-12-14 07:50:32] 2025-12-14 12:50:31,407 [wrapper] Test setup, not cleaning
[2025-12-14 07:50:32] 2025-12-14 12:50:31,425 [wrapper] apfmon messages muted
[2025-12-14 07:50:32] 2025-12-14 12:50:31,446 [wrapper] ==== wrapper stdout END ====
[2025-12-14 07:50:32] 2025-12-14 12:50:31,470 [wrapper] ==== wrapper stderr END ====
[2025-12-14 07:50:32]  *** Error codes and diagnostics ***
[2025-12-14 07:50:32]     "exeErrorCode": 0,
[2025-12-14 07:50:32]     "exeErrorDiag": "",
[2025-12-14 07:50:32]     "pilotErrorCode": 0,
[2025-12-14 07:50:32]     "pilotErrorDiag": "",
[2025-12-14 07:50:32]  *** Listing of results directory ***
[2025-12-14 07:50:32] total 445356
[2025-12-14 07:50:32] -rwx------. 1 boincer umatlas     36322 Dec 13 06:39 runpilot2-wrapper.sh
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 06:43 pilot3.tar.gz
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 06:43 queuedata.json
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas       100 Dec 14 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 07:50:32] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 14 00:05 run_atlas
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas       105 Dec 14 00:05 job.xml
[2025-12-14 07:50:32] -rw-r--r--. 2 boincer umatlas 223445578 Dec 14 00:05 EVNT.47898761._000198.pool.root.1
[2025-12-14 07:50:32] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 00:05 start_atlas.sh
[2025-12-14 07:50:32] drwxrwx--x. 2 boincer umatlas      4096 Dec 14 00:05 shared
[2025-12-14 07:50:32] -rw-r--r--. 2 boincer umatlas    592392 Dec 14 00:05 input.tar.gz
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas         0 Dec 14 00:05 boinc_lockfile
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas      2504 Dec 14 00:05 pandaJob.out
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas        57 Dec 14 00:05 setup.sh.local
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas    991728 Dec 14 00:06 agis_schedconf.cvmfs.json
[2025-12-14 07:50:32] drwx------. 5 boincer umatlas      4096 Dec 14 00:06 pilot3
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas      6843 Dec 14 07:47 init_data.xml
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas 220790738 Dec 14 07:48 HITS.47898763._003072.pool.root.1
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas       531 Dec 14 07:48 boinc_task_state.xml
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas      1040 Dec 14 07:49 memory_monitor_summary.json
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas   1516240 Dec 14 07:49 agis_ddmendpoints.agis.ALL.json
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas    681866 Dec 14 07:49 log.47898763._003072.job.log.tgz.1
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas        95 Dec 14 07:49 pilot_heartbeat.json
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas      7820 Dec 14 07:49 heartbeat.json
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 07:50 boinc_mmap_file
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas        28 Dec 14 07:50 wrapper_checkpoint.txt
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas      5009 Dec 14 07:50 pilotlog.txt
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas   3264115 Dec 14 07:50 log.47898763._003072.job.log.1
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas       357 Dec 14 07:50 output.list
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas       620 Dec 14 07:50 runtime_log
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas   3962880 Dec 14 07:50 result.tar.gz
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas      9350 Dec 14 07:50 runtime_log.err
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas       658 Dec 14 07:50 N7wKDmL9co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0RTKDmStV3Hm.diag
[2025-12-14 07:50:32] -rw-r--r--. 1 boincer umatlas     21420 Dec 14 07:50 stderr.txt
[2025-12-14 07:50:32] HITS file was successfully produced:
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas 220790738 Dec 14 07:48 shared/HITS.pool.root.1
[2025-12-14 07:50:32]  *** Contents of shared directory: ***
[2025-12-14 07:50:32] total 438300
[2025-12-14 07:50:32] -rw-r--r--. 2 boincer umatlas 223445578 Dec 14 00:05 ATLAS.root_0
[2025-12-14 07:50:32] -rw-r--r--. 2 boincer umatlas     15847 Dec 14 00:05 start_atlas.sh
[2025-12-14 07:50:32] -rw-r--r--. 2 boincer umatlas    592392 Dec 14 00:05 input.tar.gz
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas 220790738 Dec 14 07:48 HITS.pool.root.1
[2025-12-14 07:50:32] -rw-------. 1 boincer umatlas   3962880 Dec 14 07:50 result.tar.gz
07:50:34 (197059): run_atlas exited; CPU time 58484.152101
07:50:34 (197059): called boinc_finish(0)

</stderr_txt>
]]>

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