Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:52:43 (69954): wrapper (7.7.26015): starting
02:52:43 (69954): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 02:52:43] Arguments: --nthreads 4
[2025-12-14 02:52:43] Threads: 4
[2025-12-14 02:52:43] Checking for CVMFS
[2025-12-14 02:52:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 02:52:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 02:52:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 02:52:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 02:52:44] 2.9.2.0 8281 14 52396 153979 2 186 19061517 36864001 0 130560 0 162733 100.000 2 2 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 02:52:44] CVMFS is ok
[2025-12-14 02:52:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 02:52:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 02:52:44] Further information can be found at the LHC@home message board.
[2025-12-14 02:52:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 02:52:44] Checking for apptainer binary...
[2025-12-14 02:52:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 02:52:44] Running /usr/bin/apptainer --version
[2025-12-14 02:52:44] apptainer version 1.4.1-1.1
[2025-12-14 02:52:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 02:52:44] thA325
[2025-12-14 02:52:44] apptainer works
[2025-12-14 02:52:44] Set ATHENA_PROC_NUMBER=4
[2025-12-14 02:52:44] Set ATHENA_CORE_NUMBER=4
[2025-12-14 02:52:44] Starting ATLAS job with PandaID=6929300725
[2025-12-14 02:52:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 02:56:59]  *** The last 200 lines of the pilot log: ***
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | INFO     | sufficient remaining disk space (242656215040 B)
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | INFO     | update_server=False
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | INFO     | aborting loop
[2025-12-14 02:56:59] 2025-12-14 01:55:56,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:56:59] 2025-12-14 01:55:56,818 | INFO     | all job control threads have been joined
[2025-12-14 02:56:59] 2025-12-14 01:55:56,818 | INFO     | all data control threads have been joined
[2025-12-14 02:56:59] 2025-12-14 01:55:57,012 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 02:56:59] 2025-12-14 01:55:57,028 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 02:56:59] 2025-12-14 01:55:57,232 | INFO     | [job] retrieve thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,232 | INFO     | [job] job monitor thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,232 | INFO     | [job] queue monitor thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,305 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,531 | INFO     | [payload] validate_post thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,645 | INFO     | [data] copytool_in thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,673 | INFO     | all payload control threads have been joined
[2025-12-14 02:56:59] 2025-12-14 01:55:57,824 | INFO     | [data] control thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,824 | INFO     | [job] control thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:57,917 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:58,198 | INFO     | [payload] failed_post thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:58,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:58,632 | INFO     | [job] validate thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:58,678 | INFO     | [payload] control thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:58,722 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:55:59,034 | INFO     | [data] copytool_out thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:56:01,019 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 02:56:59] 2025-12-14 01:56:27,240 | INFO     | PID=73746 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 02:56:59] 2025-12-14 01:56:27,240 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 02:56:59] 2025-12-14 01:56:27,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 02:56:59] 2025-12-14 01:56:27,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 02:56:59] 2025-12-14 01:56:52,444 | INFO     | [monitor] cgroup control has ended
[2025-12-14 02:56:59] 2025-12-14 01:56:54,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287611733824)>', '<ExcThread(monitor, started 140286365783808)>']
[2025-12-14 02:56:59] 2025-12-14 01:56:55,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 02:56:59] 2025-12-14 01:56:55,391 | INFO     | [monitor] control thread has ended
[2025-12-14 02:56:59] 2025-12-14 01:56:59,509 | INFO     | all workflow threads have been joined
[2025-12-14 02:56:59] 2025-12-14 01:56:59,509 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 02:56:59] 2025-12-14 01:56:59,509 | INFO     | traces error code: 0
[2025-12-14 02:56:59] 2025-12-14 01:56:59,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 02:56:59] 2025-12-14 01:56:59,577 [wrapper] ==== pilot stdout END ====
[2025-12-14 02:56:59] 2025-12-14 01:56:59,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 02:56:59] 2025-12-14 01:56:59,585 [wrapper] pilotpid: 73746
[2025-12-14 02:56:59] 2025-12-14 01:56:59,589 [wrapper] Pilot exit status: 0
[2025-12-14 02:56:59] 2025-12-14 01:56:59,599 [wrapper] pandaids: 6929300725
[2025-12-14 02:56:59] 2025-12-14 01:56:59,621 [wrapper] cleanup supervisor_pilot   73752 73747
[2025-12-14 02:56:59] 2025-12-14 01:56:59,625 [wrapper] Test setup, not cleaning
[2025-12-14 02:56:59] 2025-12-14 01:56:59,628 [wrapper] apfmon messages muted
[2025-12-14 02:56:59] 2025-12-14 01:56:59,632 [wrapper] ==== wrapper stdout END ====
[2025-12-14 02:56:59] 2025-12-14 01:56:59,635 [wrapper] ==== wrapper stderr END ====
[2025-12-14 02:56:59]  *** Error codes and diagnostics ***
[2025-12-14 02:56:59]     "exeErrorCode": 65,
[2025-12-14 02:56:59]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 02:56:59]     "pilotErrorCode": 1305,
[2025-12-14 02:56:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-14 02:56:59]  *** Listing of results directory ***
[2025-12-14 02:56:59] total 224704
[2025-12-14 02:56:59] -rwx------ 1 boinc boinc     36322 Dec 13 12:39 runpilot2-wrapper.sh
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:43 pilot3.tar.gz
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:44 queuedata.json
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc       100 Dec 14 02:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 02:56:59] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 02:52 run_atlas
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc       105 Dec 14 02:52 job.xml
[2025-12-14 02:56:59] -rw-r--r-- 2 boinc boinc 225953582 Dec 14 02:52 EVNT.47898761._000202.pool.root.1
[2025-12-14 02:56:59] -rw-r--r-- 2 boinc boinc    592393 Dec 14 02:52 input.tar.gz
[2025-12-14 02:56:59] -rw-r--r-- 2 boinc boinc     15847 Dec 14 02:52 start_atlas.sh
[2025-12-14 02:56:59] drwxrwx--x 2 boinc boinc      4096 Dec 14 02:52 shared
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc         0 Dec 14 02:52 boinc_setup_complete
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc      6368 Dec 14 02:52 init_data.xml
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc         0 Dec 14 02:52 boinc_lockfile
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc      2504 Dec 14 02:52 pandaJob.out
[2025-12-14 02:56:59] -rw------- 1 boinc boinc    991744 Dec 14 02:52 agis_schedconf.cvmfs.json
[2025-12-14 02:56:59] -rw------- 1 boinc boinc   1516240 Dec 14 02:52 agis_ddmendpoints.agis.ALL.json
[2025-12-14 02:56:59] drwx------ 5 boinc boinc      4096 Dec 14 02:52 pilot3
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc       523 Dec 14 02:53 boinc_task_state.xml
[2025-12-14 02:56:59] -rw------- 1 boinc boinc       953 Dec 14 02:53 memory_monitor_summary.json
[2025-12-14 02:56:59] -rw------- 1 boinc boinc     33926 Dec 14 02:53 log.47898763._003174.job.log.tgz.1
[2025-12-14 02:56:59] -rw------- 1 boinc boinc        95 Dec 14 02:55 pilot_heartbeat.json
[2025-12-14 02:56:59] -rw------- 1 boinc boinc      8363 Dec 14 02:55 heartbeat.json
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc      8192 Dec 14 02:56 boinc_mmap_file
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc        23 Dec 14 02:56 wrapper_checkpoint.txt
[2025-12-14 02:56:59] -rw------- 1 boinc boinc      4750 Dec 14 02:56 pilotlog.txt
[2025-12-14 02:56:59] -rw------- 1 boinc boinc     84966 Dec 14 02:56 log.47898763._003174.job.log.1
[2025-12-14 02:56:59] -rw------- 1 boinc boinc       188 Dec 14 02:56 output.list
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc       620 Dec 14 02:56 runtime_log
[2025-12-14 02:56:59] -rw------- 1 boinc boinc    143360 Dec 14 02:56 result.tar.gz
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc      8744 Dec 14 02:56 runtime_log.err
[2025-12-14 02:56:59] -rw------- 1 boinc boinc       648 Dec 14 02:56 YosLDmL9co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdSTKDm7cDnQm.diag
[2025-12-14 02:56:59] -rw-r--r-- 1 boinc boinc      7954 Dec 14 02:56 stderr.txt
[2025-12-14 02:56:59] No HITS result produced
[2025-12-14 02:56:59]  *** Contents of shared directory: ***
[2025-12-14 02:56:59] total 221400
[2025-12-14 02:56:59] -rw-r--r-- 2 boinc boinc 225953582 Dec 14 02:52 ATLAS.root_0
[2025-12-14 02:56:59] -rw-r--r-- 2 boinc boinc    592393 Dec 14 02:52 input.tar.gz
[2025-12-14 02:56:59] -rw-r--r-- 2 boinc boinc     15847 Dec 14 02:52 start_atlas.sh
[2025-12-14 02:56:59] -rw------- 1 boinc boinc    143360 Dec 14 02:56 result.tar.gz
02:57:01 (69954): run_atlas exited; CPU time 28.197116
02:57:01 (69954): called boinc_finish(0)

</stderr_txt>
]]>

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