Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:35:25 (25662): wrapper (7.7.26015): starting
20:35:25 (25662): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 20:35:25] Arguments: --nthreads 12
[2025-12-13 20:35:25] Threads: 12
[2025-12-13 20:35:25] Checking for CVMFS
[2025-12-13 20:35:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 20:35:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 20:35:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 20:35:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 20:35:25] 2.11.2.0 2914 312949 93016 153979 1 58 15278232 20275200 1 130560 1 138265100 99.963 18294483 14996 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 20:35:25] CVMFS is ok
[2025-12-13 20:35:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 20:35:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 20:35:25] Further information can be found at the LHC@home message board.
[2025-12-13 20:35:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 20:35:25] Checking for apptainer binary...
[2025-12-13 20:35:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 20:35:25] Running /usr/bin/apptainer --version
[2025-12-13 20:35:25] apptainer version 1.3.2-1.el7
[2025-12-13 20:35:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 20:35:27] c-205-5.aglt2.org
[2025-12-13 20:35:27] apptainer works
[2025-12-13 20:35:27] Set ATHENA_PROC_NUMBER=12
[2025-12-13 20:35:27] Set ATHENA_CORE_NUMBER=12
[2025-12-13 20:35:27] Starting ATLAS job with PandaID=6929348322
[2025-12-13 20:35:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 22:16:19]  *** The last 200 lines of the pilot log: ***
[2025-12-13 22:16:19]  status=None
[2025-12-13 22:16:19]  status_code=0
[2025-12-13 22:16:19]  storage_token=
[2025-12-13 22:16:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929348322/log.47898782._003300.job.log.tgz.1
[2025-12-13 22:16:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/f8/log.47898782._003300.job.log.tgz.1
[2025-12-13 22:16:19]  workdir=None
[2025-12-13 22:16:19] ]
[2025-12-13 22:16:19] 2025-12-14 03:15:38,487 | INFO     | transferring file log.47898782._003300.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929348322/log.47898782._003300.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 22:16:19] 2025-12-14 03:15:38,487 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929348322/log.47898782._003300.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898782._003300.job
[2025-12-13 22:16:19] 2025-12-14 03:15:38,511 | INFO     | adding to output.list: log.47898782._003300.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/f8/log.47898782._003300.job.log.tg
[2025-12-13 22:16:19] 2025-12-14 03:15:38,512 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 22:16:19] 2025-12-14 03:15:38,512 | INFO     | summary of transferred files:
[2025-12-13 22:16:19] 2025-12-14 03:15:38,512 | INFO     |  -- lfn=log.47898782._003300.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 22:16:19] 2025-12-14 03:15:38,512 | INFO     | stage-out finished correctly
[2025-12-13 22:16:19] 2025-12-14 03:15:38,745 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 22:16:19] 2025-12-14 03:15:40,217 | INFO     | time since job start (5998s) is within the limit (174528.0s)
[2025-12-13 22:16:19] 2025-12-14 03:15:41,495 | INFO     | job 6929348322 has state=finished
[2025-12-13 22:16:19] 2025-12-14 03:15:41,496 | INFO     | preparing for final server update for job 6929348322 in state='finished'
[2025-12-13 22:16:19] 2025-12-14 03:15:41,496 | INFO     | this job has now completed (state=finished)
[2025-12-13 22:16:19] 2025-12-14 03:15:41,497 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 22:16:19] 2025-12-14 03:15:41,497 | INFO     | log transfer has been attempted: DONE
[2025-12-13 22:16:19] 2025-12-14 03:15:41,497 | INFO     | job 6929348322 has finished - writing final server update
[2025-12-13 22:16:19] 2025-12-14 03:15:41,497 | INFO     | total number of processed events: 400 (read)
[2025-12-13 22:16:19] 2025-12-14 03:15:41,498 | INFO     | executing command: lscpu
[2025-12-13 22:16:19] 2025-12-14 03:15:41,526 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 22:16:19] 2025-12-14 03:15:41,810 | WARNING  | process 3491 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 22:16:19] 2025-12-14 03:15:41,811 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929348322/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 22:16:19] 2025-12-14 03:15:41,898 | INFO     | number of running child processes to parent process 3491: 1
[2025-12-13 22:16:19] 2025-12-14 03:15:41,898 | INFO     | maximum number of monitored processes: 6
[2025-12-13 22:16:19] 2025-12-14 03:15:42,223 | INFO     | time since job start (6000s) is within the limit (174528.0s)
[2025-12-13 22:16:19] 2025-12-14 03:15:43,339 | INFO     | PID=29339 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 22:16:19] 2025-12-14 03:15:44,339 | INFO     | time since job start (6002s) is within the limit (174528.0s)
[2025-12-13 22:16:19] 2025-12-14 03:15:44,401 | INFO     | monitor loop #445: job 0:6929348322 is in state 'finished'
[2025-12-13 22:16:19] 2025-12-14 03:15:44,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 22:16:19] 2025-12-14 03:15:46,344 | INFO     | time since job start (6004s) is within the limit (174528.0s)
[2025-12-13 22:16:19] 2025-12-14 03:15:46,904 | INFO     | monitor loop #446: job 0:6929348322 is in state 'finished'
[2025-12-13 22:16:19] 2025-12-14 03:15:46,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,579 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 22:16:19] 2025-12-14 03:15:47,582 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 22:16:19] 2025-12-14 03:15:47,585 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929348322/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,586 | INFO     | extracted standard info from prmon json
[2025-12-13 22:16:19] 2025-12-14 03:15:47,586 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 22:16:19] 2025-12-14 03:15:47,586 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 22:16:19] 2025-12-14 03:15:47,586 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 22:16:19] 2025-12-14 03:15:47,586 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 22:16:19] 2025-12-14 03:15:47,589 | INFO     | fitting pss+swap vs Time
[2025-12-13 22:16:19] 2025-12-14 03:15:47,589 | INFO     | sum of square deviations: 233641590.0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,589 | INFO     | sum of deviations: -14841067712.000006
[2025-12-13 22:16:19] 2025-12-14 03:15:47,589 | INFO     | mean x: 1765679222.0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,590 | INFO     | mean y: 2786637.2197802197
[2025-12-13 22:16:19] 2025-12-14 03:15:47,590 | INFO     | intersect: 112159893988.58429
[2025-12-13 22:16:19] 2025-12-14 03:15:47,590 | INFO     | chi2: 0.068652140755681
[2025-12-13 22:16:19] 2025-12-14 03:15:47,590 | INFO     | current memory leak: -63.52 B/s (using 91 data points, chi2=0.07)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,590 | INFO     | could have reported an average CPU frequency of 2122 MHz (7 samples)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,590 | INFO     | ..............................
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . Timing measurements:
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . get job = 0 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . initial setup = 2 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . payload setup = 7 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . stage-in = 0 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . payload execution = 5967 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . stage-out = 0 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | . log creation = 0 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,591 | INFO     | ..............................
[2025-12-13 22:16:19] 2025-12-14 03:15:47,670 | INFO     | 
[2025-12-13 22:16:19] 2025-12-14 03:15:47,670 | INFO     | job summary report
[2025-12-13 22:16:19] 2025-12-14 03:15:47,670 | INFO     | --------------------------------------------------
[2025-12-13 22:16:19] 2025-12-14 03:15:47,671 | INFO     | PanDA job id: 6929348322
[2025-12-13 22:16:19] 2025-12-14 03:15:47,671 | INFO     | task id: 47898782
[2025-12-13 22:16:19] 2025-12-14 03:15:47,671 | INFO     | errors: (none)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 22:16:19] 2025-12-14 03:15:47,671 | INFO     | pilot state: finished 
[2025-12-13 22:16:19] 2025-12-14 03:15:47,671 | INFO     | transexitcode: 0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | exeerrorcode: 0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | exeerrordiag: 
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | exitcode: 0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | exitmsg: OK
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | cpuconsumptiontime: 66568 s
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | nevents: 400
[2025-12-13 22:16:19] 2025-12-14 03:15:47,672 | INFO     | neventsw: 0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | pid: 3491
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | pgrp: 3491
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | corecount: 12
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | event service: False
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 5978: 2311059, 5979: 2311058, 5980: 2320296, 5989: 2320434}
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | --------------------------------------------------
[2025-12-13 22:16:19] 2025-12-14 03:15:47,673 | INFO     | 
[2025-12-13 22:16:19] 2025-12-14 03:15:47,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 22:16:19] 2025-12-14 03:15:47,698 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,699 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,699 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,700 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,700 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,700 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,700 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,700 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,700 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 22:16:19] 2025-12-14 03:15:47,702 | INFO     | job 6929348322 has completed (purged errors)
[2025-12-13 22:16:19] 2025-12-14 03:15:47,702 | INFO     | overall cleanup function is called
[2025-12-13 22:16:19] 2025-12-14 03:15:48,710 | INFO     | --- collectZombieJob: --- 10, [3491]
[2025-12-13 22:16:19] 2025-12-14 03:15:48,711 | INFO     | zombie collector waiting for pid 3491
[2025-12-13 22:16:19] 2025-12-14 03:15:48,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 22:16:19] 2025-12-14 03:15:48,711 | INFO     | collected zombie processes
[2025-12-13 22:16:19] 2025-12-14 03:15:48,711 | INFO     | will attempt to kill all subprocesses of pid=3491
[2025-12-13 22:16:19] 2025-12-14 03:15:48,800 | INFO     | process IDs to be killed: [3491] (in reverse order)
[2025-12-13 22:16:19] 2025-12-14 03:15:48,855 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 22:16:19] 2025-12-14 03:15:48,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 22:16:19] 2025-12-14 03:15:48,859 | INFO     | did not find any defunct processes belonging to 3491
[2025-12-13 22:16:19] 2025-12-14 03:15:48,861 | INFO     | did not find any defunct processes belonging to 3491
[2025-12-13 22:16:19] 2025-12-14 03:15:48,862 | INFO     | ready for new job
[2025-12-13 22:16:19] 2025-12-14 03:15:48,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 22:16:19] 2025-12-14 03:15:48,863 | INFO     | ***************************************
[2025-12-13 22:16:19] 2025-12-14 03:15:48,863 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 22:16:19] 2025-12-14 03:15:48,863 | INFO     | ***************************************
[2025-12-13 22:16:19] 2025-12-14 03:15:48,863 | INFO     | 
[2025-12-13 22:16:19] 2025-12-14 03:15:48,864 | INFO     | architecture information:
[2025-12-13 22:16:19] 2025-12-14 03:15:48,864 | INFO     | executing command: cat /etc/os-release
[2025-12-13 22:16:19] 2025-12-14 03:15:48,879 | INFO     | cat /etc/os-release:
[2025-12-13 22:16:19] NAME="CentOS Linux"
[2025-12-13 22:16:19] VERSION="7 (Core)"
[2025-12-13 22:16:19] ID="centos"
[2025-12-13 22:16:19] ID_LIKE="rhel fedora"
[2025-12-13 22:16:19] VERSION_ID="7"
[2025-12-13 22:16:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 22:16:19] ANSI_COLOR="0;31"
[2025-12-13 22:16:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 22:16:19] HOME_URL="https://www.centos.org/"
[2025-12-13 22:16:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 22:16:19] 
[2025-12-13 22:16:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 22:16:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 22:16:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 22:16:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 22:16:19] 
[2025-12-13 22:16:19] 2025-12-14 03:15:48,880 | INFO     | ***************************************
[2025-12-13 22:16:19] 2025-12-14 03:15:49,383 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 22:16:19] 2025-12-14 03:15:49,400 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-12-13 22:16:19] 2025-12-14 03:15:49,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 22:16:19] 2025-12-14 03:15:49,401 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 22:16:19] 2025-12-14 03:15:49,401 | INFO     | update_server=False
[2025-12-13 22:16:19] 2025-12-14 03:15:49,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 22:16:19] 2025-12-14 03:15:49,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 22:16:19] 2025-12-14 03:15:49,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 22:16:19] 2025-12-14 03:15:49,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 22:16:19] 2025-12-14 03:15:49,408 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 22:16:19] 2025-12-14 03:15:49,408 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 22:16:19] 2025-12-14 03:15:49,408 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 22:16:19] 2025-12-14 03:15:49,408 | INFO     | will abort loop
[2025-12-13 22:16:19] 2025-12-14 03:15:49,518 | INFO     | all job control threads have been joined
[2025-12-13 22:16:19] 2025-12-14 03:15:49,579 | INFO     | all payload control threads have been joined
[2025-12-13 22:16:19] 2025-12-14 03:15:50,132 | INFO     | all data control threads have been joined
[2025-12-13 22:16:19] 2025-12-14 03:15:50,407 | INFO     | [job] retrieve thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:50,407 | INFO     | [job] queue monitor thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:50,414 | INFO     | [job] job monitor thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:50,479 | INFO     | [data] copytool_in thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:50,521 | INFO     | [job] control thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:50,581 | INFO     | [payload] control thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,008 | INFO     | [payload] failed_post thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,081 | INFO     | [job] validate thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,138 | INFO     | [data] control thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,362 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,368 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,408 | INFO     | [data] copytool_out thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,567 | INFO     | [payload] validate_post thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:51,769 | INFO     | [monitor] cgroup control has ended
[2025-12-13 22:16:19] 2025-12-14 03:15:51,852 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:53,408 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 22:16:19] 2025-12-14 03:15:53,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838741858112)>', '<ExcThread(monitor, started 139837910783744)>']
[2025-12-13 22:16:19] 2025-12-14 03:15:59,014 | INFO     | all workflow threads have been joined
[2025-12-13 22:16:19] 2025-12-14 03:15:59,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 22:16:19] 2025-12-14 03:15:59,014 | INFO     | traces error code: 0
[2025-12-13 22:16:19] 2025-12-14 03:15:59,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 22:16:19] 2025-12-14 03:16:19,541 | INFO     | PID=29339 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 22:16:19] 2025-12-14 03:16:19,542 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 22:16:19] 2025-12-14 03:16:19,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 22:16:19] 2025-12-14 03:16:19,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 22:16:19] 2025-12-14 03:16:19,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 22:16:19] 2025-12-14 03:16:19,542 | INFO     | [monitor] control thread has ended
[2025-12-13 22:16:19] 2025-12-14 03:16:19,632 [wrapper] ==== pilot stdout END ====
[2025-12-13 22:16:19] 2025-12-14 03:16:19,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 22:16:19] 2025-12-14 03:16:19,639 [wrapper] pilotpid: 29339
[2025-12-13 22:16:19] 2025-12-14 03:16:19,643 [wrapper] Pilot exit status: 0
[2025-12-13 22:16:19] 2025-12-14 03:16:19,659 [wrapper] pandaids: 6929348322
[2025-12-13 22:16:19] 2025-12-14 03:16:19,701 [wrapper] cleanup supervisor_pilot  2897 29340
[2025-12-13 22:16:19] 2025-12-14 03:16:19,705 [wrapper] Test setup, not cleaning
[2025-12-13 22:16:19] 2025-12-14 03:16:19,709 [wrapper] apfmon messages muted
[2025-12-13 22:16:19] 2025-12-14 03:16:19,713 [wrapper] ==== wrapper stdout END ====
[2025-12-13 22:16:19] 2025-12-14 03:16:19,717 [wrapper] ==== wrapper stderr END ====
[2025-12-13 22:16:19]  *** Error codes and diagnostics ***
[2025-12-13 22:16:19]     "exeErrorCode": 0,
[2025-12-13 22:16:19]     "exeErrorDiag": "",
[2025-12-13 22:16:19]     "pilotErrorCode": 0,
[2025-12-13 22:16:19]     "pilotErrorDiag": "",
[2025-12-13 22:16:19]  *** Listing of results directory ***
[2025-12-13 22:16:19] total 410892
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 12:18 pilot3.tar.gz
[2025-12-13 22:16:19] -rwx------ 1 boincer umatlas     36322 Dec 13 12:23 runpilot2-wrapper.sh
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 12:25 queuedata.json
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas       100 Dec 13 20:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 22:16:19] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 20:35 run_atlas
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas       105 Dec 13 20:35 job.xml
[2025-12-13 22:16:19] -rw-r--r-- 2 boincer umatlas 214809278 Dec 13 20:35 EVNT.47898779._000139.pool.root.1
[2025-12-13 22:16:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 20:35 start_atlas.sh
[2025-12-13 22:16:19] drwxrwx--x 2 boincer umatlas      4096 Dec 13 20:35 shared
[2025-12-13 22:16:19] -rw-r--r-- 2 boincer umatlas    592393 Dec 13 20:35 input.tar.gz
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas         0 Dec 13 20:35 boinc_lockfile
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas      2522 Dec 13 20:35 pandaJob.out
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas        57 Dec 13 20:35 setup.sh.local
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas    991744 Dec 13 20:35 agis_schedconf.cvmfs.json
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas   1516240 Dec 13 20:35 agis_ddmendpoints.agis.ALL.json
[2025-12-13 22:16:19] drwx------ 5 boincer umatlas      4096 Dec 13 20:35 pilot3
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 22:09 init_data.xml
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas 199508021 Dec 13 22:15 HITS.47898782._003300.pool.root.1
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas      1046 Dec 13 22:15 memory_monitor_summary.json
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas    404778 Dec 13 22:15 log.47898782._003300.job.log.tgz.1
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas       529 Dec 13 22:15 boinc_task_state.xml
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas      7847 Dec 13 22:15 heartbeat.json
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas        27 Dec 13 22:16 wrapper_checkpoint.txt
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 22:16 boinc_mmap_file
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas        95 Dec 13 22:16 pilot_heartbeat.json
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas       745 Dec 13 22:16 pilotlog.txt
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas    853126 Dec 13 22:16 log.47898782._003300.job.log.1
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas       357 Dec 13 22:16 output.list
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas       620 Dec 13 22:16 runtime_log
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas   1280000 Dec 13 22:16 result.tar.gz
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 22:16 runtime_log.err
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas       658 Dec 13 22:16 kmiLDmoVio8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ6PKDm30OG0m.diag
[2025-12-13 22:16:19] -rw-r--r-- 1 boincer umatlas     22166 Dec 13 22:16 stderr.txt
[2025-12-13 22:16:19] HITS file was successfully produced:
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas 199508021 Dec 13 22:15 shared/HITS.pool.root.1
[2025-12-13 22:16:19]  *** Contents of shared directory: ***
[2025-12-13 22:16:19] total 406464
[2025-12-13 22:16:19] -rw-r--r-- 2 boincer umatlas 214809278 Dec 13 20:35 ATLAS.root_0
[2025-12-13 22:16:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 20:35 start_atlas.sh
[2025-12-13 22:16:19] -rw-r--r-- 2 boincer umatlas    592393 Dec 13 20:35 input.tar.gz
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas 199508021 Dec 13 22:15 HITS.pool.root.1
[2025-12-13 22:16:19] -rw------- 1 boincer umatlas   1280000 Dec 13 22:16 result.tar.gz
22:16:21 (25662): run_atlas exited; CPU time 66548.062111
22:16:21 (25662): called boinc_finish(0)

</stderr_txt>
]]>

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