Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:42:08 (170317): wrapper (7.7.26015): starting
17:42:08 (170317): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 17:42:08] Arguments: --nthreads 12
[2025-12-13 17:42:08] Threads: 12
[2025-12-13 17:42:08] Checking for CVMFS
[2025-12-13 17:42:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 17:42:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 17:42:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 17:42:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 17:42:11] 2.11.5.0 2492782 18464 270968 153979 2 228 45037911 45568001 22019 130560 0 116089432 99.808 75618389 24794 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-13 17:42:11] CVMFS is ok
[2025-12-13 17:42:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 17:42:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 17:42:11] Further information can be found at the LHC@home message board.
[2025-12-13 17:42:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 17:42:11] Checking for apptainer binary...
[2025-12-13 17:42:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 17:42:11] Running /usr/bin/apptainer --version
[2025-12-13 17:42:11] apptainer version 1.4.1-1.el9
[2025-12-13 17:42:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 17:42:12] wns0092.triumf.lcg
[2025-12-13 17:42:12] apptainer works
[2025-12-13 17:42:13] Set ATHENA_PROC_NUMBER=12
[2025-12-13 17:42:13] Set ATHENA_CORE_NUMBER=12
[2025-12-13 17:42:13] Starting ATLAS job with PandaID=6929502945
[2025-12-13 17:42:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:50:21]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | could have reported an average CPU frequency of 2614 MHz (4 samples)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | ..............................
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . Timing measurements:
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . get job = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . initial setup = 4 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . payload setup = 49 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . stage-in = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . payload execution = 99 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . stage-out = 1 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . log creation = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | ..............................
[2025-12-13 17:50:21] 2025-12-14 01:49:46,101 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 17:50:21] 2025-12-14 01:49:46,101 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929502945/pilotlog.txt
[2025-12-13 17:50:21] 2025-12-14 01:49:46,176 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-13 17:50:21] - Log from pilotlog.txt -
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929502945/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | INFO     | extracted standard info from prmon json
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | WARNING  | wrong length of table data, x=[1765676761.0], y=[1544.0] (must be same and length>=4)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | could have reported an average CPU frequency of 2614 MHz (4 samples)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | ..............................
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . Timing measurements:
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . get job = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . initial setup = 4 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . payload setup = 49 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . stage-in = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . payload execution = 99 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . stage-out = 1 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . log creation = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | ..............................
[2025-12-13 17:50:21] 2025-12-14 01:49:46,101 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 17:50:21] 2025-12-14 01:49:46,101 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929502945/pilotlog.txt
[2025-12-13 17:50:21] 2025-12-14 01:49:46,177 | WARNING  | 
[2025-12-13 17:50:21] [begin log extracts]
[2025-12-13 17:50:21] - Log from pilotlog.txt -
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929502945/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | INFO     | extracted standard info from prmon json
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:50:21] 2025-12-14 01:49:46,099 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | WARNING  | wrong length of table data, x=[1765676761.0], y=[1544.0] (must be same and length>=4)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | could have reported an average CPU frequency of 2614 MHz (4 samples)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | ..............................
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . Timing measurements:
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . get job = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . initial setup = 4 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . payload setup = 49 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . stage-in = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . payload execution = 99 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . stage-out = 1 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | . log creation = 0 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,100 | INFO     | ..............................
[2025-12-13 17:50:21] 2025-12-14 01:49:46,101 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 17:50:21] 2025-12-14 01:49:46,101 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929502945/pilotlog.txt
[2025-12-13 17:50:21] [end log extracts]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,177 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,178 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-13 17:50:21] 2025-12-14 01:49:46,257 | INFO     | time since job start (396s) is within the limit (174528.0s)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | 
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | job summary report
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | --------------------------------------------------
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | PanDA job id: 6929502945
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | task id: 47898878
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-13 17:46:56,768 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | pilot state: failed 
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | transexitcode: 65
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | exeerrorcode: 65
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | exitcode: 65
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | cpuconsumptiontime: 19 s
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | nevents: 0
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | neventsw: 0
[2025-12-13 17:50:21] 2025-12-14 01:49:46,654 | INFO     | pid: 181763
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | pgrp: 181763
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | corecount: 12
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | event service: False
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | sizes: {0: 2283935, 1: 2283963, 13: 2283963, 23: 2284019, 34: 2284047, 39: 2284337, 45: 2284493, 153: 2307653, 155: 2311973, 313: 2312111}
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | --------------------------------------------------
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | 
[2025-12-13 17:50:21] 2025-12-14 01:49:46,655 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | job 6929502945 has completed (purged errors)
[2025-12-13 17:50:21] 2025-12-14 01:49:46,746 | INFO     | overall cleanup function is called
[2025-12-13 17:50:21] 2025-12-14 01:49:47,752 | INFO     | --- collectZombieJob: --- 10, [181763]
[2025-12-13 17:50:21] 2025-12-14 01:49:47,753 | INFO     | zombie collector waiting for pid 181763
[2025-12-13 17:50:21] 2025-12-14 01:49:47,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:50:21] 2025-12-14 01:49:47,753 | INFO     | collected zombie processes
[2025-12-13 17:50:21] 2025-12-14 01:49:47,753 | INFO     | will attempt to kill all subprocesses of pid=181763
[2025-12-13 17:50:21] 2025-12-14 01:49:48,820 | INFO     | process IDs to be killed: [181763] (in reverse order)
[2025-12-13 17:50:21] 2025-12-14 01:49:49,094 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:50:21] 2025-12-14 01:49:49,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:50:21] 2025-12-14 01:49:49,109 | INFO     | did not find any defunct processes belonging to 181763
[2025-12-13 17:50:21] 2025-12-14 01:49:49,180 | INFO     | did not find any defunct processes belonging to 181763
[2025-12-13 17:50:21] 2025-12-14 01:49:49,180 | INFO     | ready for new job
[2025-12-13 17:50:21] 2025-12-14 01:49:49,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:50:21] 2025-12-14 01:49:49,181 | INFO     | ***************************************
[2025-12-13 17:50:21] 2025-12-14 01:49:49,181 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:50:21] 2025-12-14 01:49:49,181 | INFO     | ***************************************
[2025-12-13 17:50:21] 2025-12-14 01:49:49,181 | INFO     | 
[2025-12-13 17:50:21] 2025-12-14 01:49:49,185 | INFO     | architecture information:
[2025-12-13 17:50:21] 2025-12-14 01:49:49,196 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:50:21] 2025-12-14 01:49:49,264 | INFO     | cat /etc/os-release:
[2025-12-13 17:50:21] NAME="CentOS Linux"
[2025-12-13 17:50:21] VERSION="7 (Core)"
[2025-12-13 17:50:21] ID="centos"
[2025-12-13 17:50:21] ID_LIKE="rhel fedora"
[2025-12-13 17:50:21] VERSION_ID="7"
[2025-12-13 17:50:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:50:21] ANSI_COLOR="0;31"
[2025-12-13 17:50:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:50:21] HOME_URL="https://www.centos.org/"
[2025-12-13 17:50:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:50:21] 
[2025-12-13 17:50:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:50:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:50:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:50:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:50:21] 
[2025-12-13 17:50:21] 2025-12-14 01:49:49,264 | INFO     | ***************************************
[2025-12-13 17:50:21] 2025-12-14 01:49:49,768 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-13 17:50:21] 2025-12-14 01:49:49,816 | INFO     | sufficient remaining disk space (2175133548544 B)
[2025-12-13 17:50:21] 2025-12-14 01:49:49,816 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:50:21] 2025-12-14 01:49:49,816 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:50:21] 2025-12-14 01:49:49,816 | INFO     | update_server=False
[2025-12-13 17:50:21] 2025-12-14 01:49:49,816 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:50:21] 2025-12-14 01:49:49,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:50:21] 2025-12-14 01:49:50,015 | INFO     | all job control threads have been joined
[2025-12-13 17:50:21] 2025-12-14 01:49:50,020 | INFO     | all data control threads have been joined
[2025-12-13 17:50:21] 2025-12-14 01:49:50,088 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 17:50:21] 2025-12-14 01:49:50,089 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 17:50:21] 2025-12-14 01:49:50,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:50:21] 2025-12-14 01:49:50,089 | INFO     | will abort loop
[2025-12-13 17:50:21] 2025-12-14 01:49:50,823 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,021 | INFO     | [job] control thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,027 | INFO     | [data] control thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,103 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,212 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,329 | INFO     | all payload control threads have been joined
[2025-12-13 17:50:21] 2025-12-14 01:49:51,542 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,544 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:50:21] 2025-12-14 01:49:51,551 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:51,824 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:52,097 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:52,221 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:52,221 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:52,221 | INFO     | [job] validate thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:52,336 | INFO     | [payload] control thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:52,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:50:21] 2025-12-14 01:49:52,552 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:49:56,482 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:50:21] 2025-12-14 01:50:10,711 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:50:21] 2025-12-14 01:50:12,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801011550016)>', '<ExcThread(monitor, started 139800170456832)>']
[2025-12-13 17:50:21] 2025-12-14 01:50:17,801 | INFO     | all workflow threads have been joined
[2025-12-13 17:50:21] 2025-12-14 01:50:17,801 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:50:21] 2025-12-14 01:50:17,801 | INFO     | traces error code: 0
[2025-12-13 17:50:21] 2025-12-14 01:50:17,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:50:21] 2025-12-14 01:50:20,108 | INFO     | PID=174263 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 17:50:21] 2025-12-14 01:50:20,108 | INFO     | .. there are 49 such processes running
[2025-12-13 17:50:21] 2025-12-14 01:50:20,114 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:50:21] 2025-12-14 01:50:20,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:50:21] 2025-12-14 01:50:20,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:50:21] 2025-12-14 01:50:20,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:50:21] 2025-12-14 01:50:20,114 | CRITICAL | thread 'MainThread' is not alive
[2025-12-13 17:50:21] 2025-12-14 01:50:20,114 | INFO     | [monitor] control thread has ended
[2025-12-13 17:50:21] 2025-12-14 01:50:20,704 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:50:21] 2025-12-14 01:50:20,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:50:21] 2025-12-14 01:50:20,757 [wrapper] pilotpid: 174263
[2025-12-13 17:50:21] 2025-12-14 01:50:20,780 [wrapper] Pilot exit status: 0
[2025-12-13 17:50:21] 2025-12-14 01:50:20,864 [wrapper] pandaids: 6929502945
[2025-12-13 17:50:21] 2025-12-14 01:50:20,989 [wrapper] cleanup supervisor_pilot  174269 174264
[2025-12-13 17:50:21] 2025-12-14 01:50:21,021 [wrapper] Test setup, not cleaning
[2025-12-13 17:50:21] 2025-12-14 01:50:21,029 [wrapper] apfmon messages muted
[2025-12-13 17:50:21] 2025-12-14 01:50:21,031 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:50:21] 2025-12-14 01:50:21,033 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:50:21]  *** Error codes and diagnostics ***
[2025-12-13 17:50:21]     "exeErrorCode": 65,
[2025-12-13 17:50:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 17:50:21]     "pilotErrorCode": 1305,
[2025-12-13 17:50:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 17:50:21]  *** Listing of results directory ***
[2025-12-13 17:50:21] total 196220
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc    579449 Dec 13 09:18 pilot3.tar.gz
[2025-12-13 17:50:21] -rwx------. 1 boinc boinc     36322 Dec 13 09:22 runpilot2-wrapper.sh
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc      5112 Dec 13 09:24 queuedata.json
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc       100 Dec 13 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:50:21] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 17:42 run_atlas
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc       105 Dec 13 17:42 job.xml
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc      6596 Dec 13 17:42 init_data.xml
[2025-12-13 17:50:21] -rw-r--r--. 2 boinc boinc 196765987 Dec 13 17:42 EVNT.47898875._000017.pool.root.1
[2025-12-13 17:50:21] -rw-r--r--. 2 boinc boinc     15847 Dec 13 17:42 start_atlas.sh
[2025-12-13 17:50:21] drwxrwx--x. 2 boinc boinc      4096 Dec 13 17:42 shared
[2025-12-13 17:50:21] -rw-r--r--. 2 boinc boinc    592394 Dec 13 17:42 input.tar.gz
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc         0 Dec 13 17:42 boinc_lockfile
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc      2497 Dec 13 17:42 pandaJob.out
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc    991744 Dec 13 17:43 agis_schedconf.cvmfs.json
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc   1516240 Dec 13 17:43 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:50:21] drwx------. 5 boinc boinc      4096 Dec 13 17:43 pilot3
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc       525 Dec 13 17:46 boinc_task_state.xml
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc       952 Dec 13 17:47 memory_monitor_summary.json
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc     22585 Dec 13 17:47 log.47898878._000416.job.log.tgz.1
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc      8376 Dec 13 17:49 heartbeat.json
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc      8192 Dec 13 17:49 boinc_mmap_file
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc        23 Dec 13 17:49 wrapper_checkpoint.txt
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc        95 Dec 13 17:50 pilot_heartbeat.json
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc       892 Dec 13 17:50 pilotlog.txt
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc    105281 Dec 13 17:50 log.47898878._000416.job.log.1
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc       188 Dec 13 17:50 output.list
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc       620 Dec 13 17:50 runtime_log
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc    143360 Dec 13 17:50 result.tar.gz
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc      8636 Dec 13 17:50 runtime_log.err
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc       644 Dec 13 17:50 6p1NDm1Uio8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr7TKDmF3cohm.diag
[2025-12-13 17:50:21] -rw-r--r--. 1 boinc boinc     21804 Dec 13 17:50 stderr.txt
[2025-12-13 17:50:21] No HITS result produced
[2025-12-13 17:50:21]  *** Contents of shared directory: ***
[2025-12-13 17:50:21] total 192896
[2025-12-13 17:50:21] -rw-r--r--. 2 boinc boinc 196765987 Dec 13 17:42 ATLAS.root_0
[2025-12-13 17:50:21] -rw-r--r--. 2 boinc boinc     15847 Dec 13 17:42 start_atlas.sh
[2025-12-13 17:50:21] -rw-r--r--. 2 boinc boinc    592394 Dec 13 17:42 input.tar.gz
[2025-12-13 17:50:21] -rw-------. 1 boinc boinc    143360 Dec 13 17:50 result.tar.gz
17:50:23 (170317): run_atlas exited; CPU time 35.964100
17:50:23 (170317): called boinc_finish(0)

</stderr_txt>
]]>

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