Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:26:10 (28041): wrapper (7.7.26015): starting
19:26:10 (28041): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 19:26:10] Arguments: --nthreads 12
[2025-12-13 19:26:10] Threads: 12
[2025-12-13 19:26:10] Checking for CVMFS
[2025-12-13 19:26:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 19:26:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 19:26:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 19:26:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 19:26:10] 2.11.2.0 2925 312880 96444 153978 2 1 16228303 20275201 1 130560 1 138407407 99.967 18180197 15173 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 19:26:10] CVMFS is ok
[2025-12-13 19:26:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 19:26:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 19:26:10] Further information can be found at the LHC@home message board.
[2025-12-13 19:26:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 19:26:10] Checking for apptainer binary...
[2025-12-13 19:26:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 19:26:10] Running /usr/bin/apptainer --version
[2025-12-13 19:26:10] apptainer version 1.3.2-1.el7
[2025-12-13 19:26:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 19:26:12] c-205-9.aglt2.org
[2025-12-13 19:26:12] apptainer works
[2025-12-13 19:26:12] Set ATHENA_PROC_NUMBER=12
[2025-12-13 19:26:12] Set ATHENA_CORE_NUMBER=12
[2025-12-13 19:26:12] Starting ATLAS job with PandaID=6929343981
[2025-12-13 19:26:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 20:50:04]  *** The last 200 lines of the pilot log: ***
[2025-12-13 20:50:04]  replicas=None
[2025-12-13 20:50:04]  scope=mc23_13p6TeV
[2025-12-13 20:50:04]  status=None
[2025-12-13 20:50:04]  status_code=0
[2025-12-13 20:50:04]  storage_token=
[2025-12-13 20:50:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929343981/log.47886831._006101.job.log.tgz.1
[2025-12-13 20:50:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/9d/log.47886831._006101.job.log.tgz.1
[2025-12-13 20:50:04]  workdir=None
[2025-12-13 20:50:04] ]
[2025-12-13 20:50:04] 2025-12-14 01:49:24,741 | INFO     | transferring file log.47886831._006101.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929343981/log.47886831._006101.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 20:50:04] 2025-12-14 01:49:24,741 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929343981/log.47886831._006101.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._006101.job
[2025-12-13 20:50:04] 2025-12-14 01:49:24,764 | INFO     | adding to output.list: log.47886831._006101.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/9d/log.47886831._006101.job.log.tg
[2025-12-13 20:50:04] 2025-12-14 01:49:24,765 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 20:50:04] 2025-12-14 01:49:24,765 | INFO     | summary of transferred files:
[2025-12-13 20:50:04] 2025-12-14 01:49:24,765 | INFO     |  -- lfn=log.47886831._006101.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 20:50:04] 2025-12-14 01:49:24,765 | INFO     | stage-out finished correctly
[2025-12-13 20:50:04] 2025-12-14 01:49:25,380 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 20:50:04] 2025-12-14 01:49:25,460 | INFO     | job 6929343981 has state=finished
[2025-12-13 20:50:04] 2025-12-14 01:49:25,460 | INFO     | preparing for final server update for job 6929343981 in state='finished'
[2025-12-13 20:50:04] 2025-12-14 01:49:25,520 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-13 20:50:04] 2025-12-14 01:49:25,520 | INFO     | this job has now completed (state=finished)
[2025-12-13 20:50:04] 2025-12-14 01:49:25,520 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 20:50:04] 2025-12-14 01:49:25,520 | INFO     | log transfer has been attempted: DONE
[2025-12-13 20:50:04] 2025-12-14 01:49:25,521 | INFO     | job 6929343981 has finished - writing final server update
[2025-12-13 20:50:04] 2025-12-14 01:49:25,521 | INFO     | total number of processed events: 400 (read)
[2025-12-13 20:50:04] 2025-12-14 01:49:25,522 | INFO     | executing command: lscpu
[2025-12-13 20:50:04] 2025-12-14 01:49:25,548 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 20:50:04] 2025-12-14 01:49:25,981 | INFO     | monitor loop #372: job 0:6929343981 is in state 'finished'
[2025-12-13 20:50:04] 2025-12-14 01:49:25,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:50:04] 2025-12-14 01:49:26,702 | INFO     | time since job start (4977s) is within the limit (174528.0s)
[2025-12-13 20:50:04] 2025-12-14 01:49:28,484 | INFO     | monitor loop #373: job 0:6929343981 is in state 'finished'
[2025-12-13 20:50:04] 2025-12-14 01:49:28,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:50:04] 2025-12-14 01:49:28,708 | INFO     | time since job start (4979s) is within the limit (174528.0s)
[2025-12-13 20:50:04] 2025-12-14 01:49:30,714 | INFO     | time since job start (4981s) is within the limit (174528.0s)
[2025-12-13 20:50:04] 2025-12-14 01:49:30,987 | INFO     | monitor loop #374: job 0:6929343981 is in state 'finished'
[2025-12-13 20:50:04] 2025-12-14 01:49:30,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,654 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 20:50:04] 2025-12-14 01:49:31,658 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 20:50:04] 2025-12-14 01:49:31,660 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929343981/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,661 | INFO     | extracted standard info from prmon json
[2025-12-13 20:50:04] 2025-12-14 01:49:31,661 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 20:50:04] 2025-12-14 01:49:31,661 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 20:50:04] 2025-12-14 01:49:31,662 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 20:50:04] 2025-12-14 01:49:31,662 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 20:50:04] 2025-12-14 01:49:31,664 | INFO     | fitting pss+swap vs Time
[2025-12-13 20:50:04] 2025-12-14 01:49:31,664 | INFO     | sum of square deviations: 130793150.0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,664 | INFO     | sum of deviations: -8161596992.0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,664 | INFO     | mean x: 1765674580.0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,664 | INFO     | mean y: 2794952.2266666666
[2025-12-13 20:50:04] 2025-12-14 01:49:31,665 | INFO     | intersect: 110182298549.92169
[2025-12-13 20:50:04] 2025-12-14 01:49:31,665 | INFO     | chi2: 0.1681551651095361
[2025-12-13 20:50:04] 2025-12-14 01:49:31,665 | INFO     | current memory leak: -62.40 B/s (using 75 data points, chi2=0.17)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,665 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,665 | INFO     | ..............................
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . Timing measurements:
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . get job = 0 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . initial setup = 2 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . payload setup = 7 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . stage-in = 0 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . payload execution = 4947 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . stage-out = 0 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | . log creation = 0 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,666 | INFO     | ..............................
[2025-12-13 20:50:04] 2025-12-14 01:49:31,747 | INFO     | 
[2025-12-13 20:50:04] 2025-12-14 01:49:31,747 | INFO     | job summary report
[2025-12-13 20:50:04] 2025-12-14 01:49:31,747 | INFO     | --------------------------------------------------
[2025-12-13 20:50:04] 2025-12-14 01:49:31,748 | INFO     | PanDA job id: 6929343981
[2025-12-13 20:50:04] 2025-12-14 01:49:31,748 | INFO     | task id: 47886831
[2025-12-13 20:50:04] 2025-12-14 01:49:31,748 | INFO     | errors: (none)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 20:50:04] 2025-12-14 01:49:31,748 | INFO     | pilot state: finished 
[2025-12-13 20:50:04] 2025-12-14 01:49:31,748 | INFO     | transexitcode: 0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,749 | INFO     | exeerrorcode: 0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,749 | INFO     | exeerrordiag: 
[2025-12-13 20:50:04] 2025-12-14 01:49:31,749 | INFO     | exitcode: 0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,749 | INFO     | exitmsg: OK
[2025-12-13 20:50:04] 2025-12-14 01:49:31,749 | INFO     | cpuconsumptiontime: 51419 s
[2025-12-13 20:50:04] 2025-12-14 01:49:31,749 | INFO     | nevents: 400
[2025-12-13 20:50:04] 2025-12-14 01:49:31,750 | INFO     | neventsw: 0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,750 | INFO     | pid: 6191
[2025-12-13 20:50:04] 2025-12-14 01:49:31,750 | INFO     | pgrp: 6191
[2025-12-13 20:50:04] 2025-12-14 01:49:31,750 | INFO     | corecount: 12
[2025-12-13 20:50:04] 2025-12-14 01:49:31,750 | INFO     | event service: False
[2025-12-13 20:50:04] 2025-12-14 01:49:31,750 | INFO     | sizes: {0: 2283989, 5: 2284251, 11: 2284307, 4958: 2310540, 4959: 2319538, 4960: 2319594, 4966: 2319916}
[2025-12-13 20:50:04] 2025-12-14 01:49:31,751 | INFO     | --------------------------------------------------
[2025-12-13 20:50:04] 2025-12-14 01:49:31,751 | INFO     | 
[2025-12-13 20:50:04] 2025-12-14 01:49:31,751 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 20:50:04] 2025-12-14 01:49:31,776 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,776 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,776 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,776 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,777 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,777 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,777 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,777 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,778 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,778 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 20:50:04] 2025-12-14 01:49:31,779 | INFO     | job 6929343981 has completed (purged errors)
[2025-12-13 20:50:04] 2025-12-14 01:49:31,779 | INFO     | overall cleanup function is called
[2025-12-13 20:50:04] 2025-12-14 01:49:32,785 | INFO     | --- collectZombieJob: --- 10, [6191]
[2025-12-13 20:50:04] 2025-12-14 01:49:32,785 | INFO     | zombie collector waiting for pid 6191
[2025-12-13 20:50:04] 2025-12-14 01:49:32,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 20:50:04] 2025-12-14 01:49:32,785 | INFO     | collected zombie processes
[2025-12-13 20:50:04] 2025-12-14 01:49:32,786 | INFO     | will attempt to kill all subprocesses of pid=6191
[2025-12-13 20:50:04] 2025-12-14 01:49:32,875 | INFO     | process IDs to be killed: [6191] (in reverse order)
[2025-12-13 20:50:04] 2025-12-14 01:49:32,927 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 20:50:04] 2025-12-14 01:49:32,927 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 20:50:04] 2025-12-14 01:49:32,931 | INFO     | did not find any defunct processes belonging to 6191
[2025-12-13 20:50:04] 2025-12-14 01:49:32,934 | INFO     | did not find any defunct processes belonging to 6191
[2025-12-13 20:50:04] 2025-12-14 01:49:32,934 | INFO     | ready for new job
[2025-12-13 20:50:04] 2025-12-14 01:49:32,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 20:50:04] 2025-12-14 01:49:32,936 | INFO     | ***************************************
[2025-12-13 20:50:04] 2025-12-14 01:49:32,936 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 20:50:04] 2025-12-14 01:49:32,936 | INFO     | ***************************************
[2025-12-13 20:50:04] 2025-12-14 01:49:32,936 | INFO     | 
[2025-12-13 20:50:04] 2025-12-14 01:49:32,937 | INFO     | architecture information:
[2025-12-13 20:50:04] 2025-12-14 01:49:32,937 | INFO     | executing command: cat /etc/os-release
[2025-12-13 20:50:04] 2025-12-14 01:49:32,953 | INFO     | cat /etc/os-release:
[2025-12-13 20:50:04] NAME="CentOS Linux"
[2025-12-13 20:50:04] VERSION="7 (Core)"
[2025-12-13 20:50:04] ID="centos"
[2025-12-13 20:50:04] ID_LIKE="rhel fedora"
[2025-12-13 20:50:04] VERSION_ID="7"
[2025-12-13 20:50:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 20:50:04] ANSI_COLOR="0;31"
[2025-12-13 20:50:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 20:50:04] HOME_URL="https://www.centos.org/"
[2025-12-13 20:50:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 20:50:04] 
[2025-12-13 20:50:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 20:50:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 20:50:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 20:50:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 20:50:04] 
[2025-12-13 20:50:04] 2025-12-14 01:49:32,954 | INFO     | ***************************************
[2025-12-13 20:50:04] 2025-12-14 01:49:33,457 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 20:50:04] 2025-12-14 01:49:33,474 | INFO     | sufficient remaining disk space (29445062656 B)
[2025-12-13 20:50:04] 2025-12-14 01:49:33,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 20:50:04] 2025-12-14 01:49:33,474 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 20:50:04] 2025-12-14 01:49:33,475 | INFO     | update_server=False
[2025-12-13 20:50:04] 2025-12-14 01:49:33,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 20:50:04] 2025-12-14 01:49:33,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:50:04] 2025-12-14 01:49:33,475 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 20:50:04] 2025-12-14 01:49:33,491 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 20:50:04] 2025-12-14 01:49:33,491 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 20:50:04] 2025-12-14 01:49:33,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:50:04] 2025-12-14 01:49:33,491 | INFO     | will abort loop
[2025-12-13 20:50:04] 2025-12-14 01:49:34,224 | INFO     | all data control threads have been joined
[2025-12-13 20:50:04] 2025-12-14 01:49:34,480 | INFO     | [job] retrieve thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:34,481 | INFO     | [job] queue monitor thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:34,497 | INFO     | [job] job monitor thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:34,673 | INFO     | [payload] validate_post thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:34,737 | INFO     | all payload control threads have been joined
[2025-12-13 20:50:04] 2025-12-14 01:49:34,801 | INFO     | all job control threads have been joined
[2025-12-13 20:50:04] 2025-12-14 01:49:34,940 | INFO     | [data] copytool_in thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,159 | INFO     | [payload] failed_post thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,229 | INFO     | [data] control thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,276 | INFO     | [job] validate thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,409 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,481 | INFO     | [data] copytool_out thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,501 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,574 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,742 | INFO     | [payload] control thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,806 | INFO     | [job] control thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:35,968 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 20:50:04] 2025-12-14 01:49:36,761 | INFO     | [monitor] cgroup control has ended
[2025-12-13 20:50:04] 2025-12-14 01:49:39,973 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:44,521 | INFO     | job.realtimelogging is not enabled
[2025-12-13 20:50:04] 2025-12-14 01:49:45,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 20:50:04] 2025-12-14 01:49:46,649 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139832733546304)>', '<ExcThread(monitor, started 139831745160960)>']
[2025-12-13 20:50:04] 2025-12-14 01:49:51,674 | INFO     | all workflow threads have been joined
[2025-12-13 20:50:04] 2025-12-14 01:49:51,674 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 20:50:04] 2025-12-14 01:49:51,674 | INFO     | traces error code: 0
[2025-12-13 20:50:04] 2025-12-14 01:49:51,675 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 20:50:04] 2025-12-14 01:50:03,922 | INFO     | PID=32102 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 20:50:04] 2025-12-14 01:50:03,923 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 20:50:04] 2025-12-14 01:50:03,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 20:50:04] 2025-12-14 01:50:03,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 20:50:04] 2025-12-14 01:50:03,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 20:50:04] 2025-12-14 01:50:03,923 | INFO     | [monitor] control thread has ended
[2025-12-13 20:50:04] 2025-12-14 01:50:04,009 [wrapper] ==== pilot stdout END ====
[2025-12-13 20:50:04] 2025-12-14 01:50:04,013 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 20:50:04] 2025-12-14 01:50:04,017 [wrapper] pilotpid: 32102
[2025-12-13 20:50:04] 2025-12-14 01:50:04,021 [wrapper] Pilot exit status: 0
[2025-12-13 20:50:04] 2025-12-14 01:50:04,038 [wrapper] pandaids: 6929343981
[2025-12-13 20:50:04] 2025-12-14 01:50:04,076 [wrapper] cleanup supervisor_pilot  2379 32103
[2025-12-13 20:50:04] 2025-12-14 01:50:04,080 [wrapper] Test setup, not cleaning
[2025-12-13 20:50:04] 2025-12-14 01:50:04,084 [wrapper] apfmon messages muted
[2025-12-13 20:50:04] 2025-12-14 01:50:04,088 [wrapper] ==== wrapper stdout END ====
[2025-12-13 20:50:04] 2025-12-14 01:50:04,091 [wrapper] ==== wrapper stderr END ====
[2025-12-13 20:50:04]  *** Error codes and diagnostics ***
[2025-12-13 20:50:04]     "exeErrorCode": 0,
[2025-12-13 20:50:04]     "exeErrorDiag": "",
[2025-12-13 20:50:04]     "pilotErrorCode": 0,
[2025-12-13 20:50:04]     "pilotErrorDiag": "",
[2025-12-13 20:50:04]  *** Listing of results directory ***
[2025-12-13 20:50:04] total 344800
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 12:18 pilot3.tar.gz
[2025-12-13 20:50:04] -rwx------ 1 boincer umatlas     36322 Dec 13 12:20 runpilot2-wrapper.sh
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 12:21 queuedata.json
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas       100 Dec 13 19:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 20:50:04] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 19:26 run_atlas
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas       105 Dec 13 19:26 job.xml
[2025-12-13 20:50:04] -rw-r--r-- 2 boincer umatlas 194900572 Dec 13 19:26 EVNT.47886829._000244.pool.root.1
[2025-12-13 20:50:04] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 19:26 start_atlas.sh
[2025-12-13 20:50:04] drwxrwx--x 2 boincer umatlas      4096 Dec 13 19:26 shared
[2025-12-13 20:50:04] -rw-r--r-- 2 boincer umatlas    592417 Dec 13 19:26 input.tar.gz
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas         0 Dec 13 19:26 boinc_lockfile
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas      2537 Dec 13 19:26 pandaJob.out
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas        57 Dec 13 19:26 setup.sh.local
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas    991736 Dec 13 19:26 agis_schedconf.cvmfs.json
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas   1516240 Dec 13 19:26 agis_ddmendpoints.agis.ALL.json
[2025-12-13 20:50:04] drwx------ 5 boincer umatlas      4096 Dec 13 19:26 pilot3
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 20:48 init_data.xml
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas       530 Dec 13 20:48 boinc_task_state.xml
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas 152050987 Dec 13 20:48 HITS.47886831._006101.pool.root.1
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas      1046 Dec 13 20:49 memory_monitor_summary.json
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas    386180 Dec 13 20:49 log.47886831._006101.job.log.tgz.1
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas      7851 Dec 13 20:49 heartbeat.json
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas        27 Dec 13 20:49 wrapper_checkpoint.txt
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 20:49 boinc_mmap_file
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas       745 Dec 13 20:50 pilotlog.txt
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas        95 Dec 13 20:50 pilot_heartbeat.json
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas    716741 Dec 13 20:50 log.47886831._006101.job.log.1
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas       357 Dec 13 20:50 output.list
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas       620 Dec 13 20:50 runtime_log
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas   1126400 Dec 13 20:50 result.tar.gz
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas       658 Dec 13 20:50 wj5KDmQTio8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr0TKDmhKEkXm.diag
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 20:50 runtime_log.err
[2025-12-13 20:50:04] -rw-r--r-- 1 boincer umatlas     21854 Dec 13 20:50 stderr.txt
[2025-12-13 20:50:04] HITS file was successfully produced:
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas 152050987 Dec 13 20:48 shared/HITS.pool.root.1
[2025-12-13 20:50:04]  *** Contents of shared directory: ***
[2025-12-13 20:50:04] total 340524
[2025-12-13 20:50:04] -rw-r--r-- 2 boincer umatlas 194900572 Dec 13 19:26 ATLAS.root_0
[2025-12-13 20:50:04] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 19:26 start_atlas.sh
[2025-12-13 20:50:04] -rw-r--r-- 2 boincer umatlas    592417 Dec 13 19:26 input.tar.gz
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas 152050987 Dec 13 20:48 HITS.pool.root.1
[2025-12-13 20:50:04] -rw------- 1 boincer umatlas   1126400 Dec 13 20:50 result.tar.gz
20:50:05 (28041): run_atlas exited; CPU time 51410.333869
20:50:05 (28041): called boinc_finish(0)

</stderr_txt>
]]>

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