Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:54 (737208): wrapper (7.7.26015): starting
05:03:54 (737208): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 05:03:54] Arguments: --nthreads 4
[2025-12-14 05:03:54] Threads: 4
[2025-12-14 05:03:54] Checking for CVMFS
[2025-12-14 05:03:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 05:03:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 05:03:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 05:03:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 05:03:55] 2.9.2.0 362371 1274 82876 153982 0 57 19825909 36864000 0 130560 0 976225 99.991 46378 19964 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 05:03:55] CVMFS is ok
[2025-12-14 05:03:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 05:03:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 05:03:55] Further information can be found at the LHC@home message board.
[2025-12-14 05:03:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 05:03:55] Checking for apptainer binary...
[2025-12-14 05:03:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 05:03:55] Running /usr/bin/apptainer --version
[2025-12-14 05:03:55] apptainer version 1.4.1-1.1
[2025-12-14 05:03:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 05:03:55] thA319a
[2025-12-14 05:03:55] apptainer works
[2025-12-14 05:03:55] Set ATHENA_PROC_NUMBER=4
[2025-12-14 05:03:55] Set ATHENA_CORE_NUMBER=4
[2025-12-14 05:03:55] Starting ATLAS job with PandaID=6929503375
[2025-12-14 05:03:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 06:12:14]  *** The last 200 lines of the pilot log: ***
[2025-12-14 06:12:14] 2025-12-14 05:11:48,219 | INFO     | --- collectZombieJob: --- 10, [747590]
[2025-12-14 06:12:14] 2025-12-14 05:11:48,220 | INFO     | zombie collector waiting for pid 747590
[2025-12-14 06:12:14] 2025-12-14 05:11:48,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 06:12:14] 2025-12-14 05:11:48,220 | INFO     | collected zombie processes
[2025-12-14 06:12:14] 2025-12-14 05:11:48,220 | INFO     | will attempt to kill all subprocesses of pid=747590
[2025-12-14 06:12:14] 2025-12-14 05:11:48,265 | INFO     | process IDs to be killed: [747590] (in reverse order)
[2025-12-14 06:12:14] 2025-12-14 05:11:48,298 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 06:12:14] 2025-12-14 05:11:48,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 06:12:14] 2025-12-14 05:11:48,300 | INFO     | did not find any defunct processes belonging to 747590
[2025-12-14 06:12:14] 2025-12-14 05:11:48,301 | INFO     | did not find any defunct processes belonging to 747590
[2025-12-14 06:12:14] 2025-12-14 05:11:48,301 | INFO     | ready for new job
[2025-12-14 06:12:14] 2025-12-14 05:11:48,301 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 06:12:14] 2025-12-14 05:11:48,302 | INFO     | ***************************************
[2025-12-14 06:12:14] 2025-12-14 05:11:48,302 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 06:12:14] 2025-12-14 05:11:48,302 | INFO     | ***************************************
[2025-12-14 06:12:14] 2025-12-14 05:11:48,302 | INFO     | 
[2025-12-14 06:12:14] 2025-12-14 05:11:48,303 | INFO     | architecture information:
[2025-12-14 06:12:14] 2025-12-14 05:11:48,303 | INFO     | executing command: cat /etc/os-release
[2025-12-14 06:12:14] 2025-12-14 05:11:48,317 | INFO     | cat /etc/os-release:
[2025-12-14 06:12:14] NAME="CentOS Linux"
[2025-12-14 06:12:14] VERSION="7 (Core)"
[2025-12-14 06:12:14] ID="centos"
[2025-12-14 06:12:14] ID_LIKE="rhel fedora"
[2025-12-14 06:12:14] VERSION_ID="7"
[2025-12-14 06:12:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 06:12:14] ANSI_COLOR="0;31"
[2025-12-14 06:12:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 06:12:14] HOME_URL="https://www.centos.org/"
[2025-12-14 06:12:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 06:12:14] 
[2025-12-14 06:12:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 06:12:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 06:12:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 06:12:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 06:12:14] 
[2025-12-14 06:12:14] 2025-12-14 05:11:48,317 | INFO     | ***************************************
[2025-12-14 06:12:14] 2025-12-14 05:11:48,820 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 06:12:14] 2025-12-14 05:11:48,838 | INFO     | sufficient remaining disk space (341416345600 B)
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | INFO     | update_server=False
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 06:12:14] 2025-12-14 05:11:48,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 06:12:14] 2025-12-14 05:11:48,980 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 06:12:14] 2025-12-14 05:11:48,980 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 06:12:14] 2025-12-14 05:11:48,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 06:12:14] 2025-12-14 05:11:48,980 | INFO     | will abort loop
[2025-12-14 06:12:14] 2025-12-14 05:11:49,339 | INFO     | all data control threads have been joined
[2025-12-14 06:12:14] 2025-12-14 05:11:49,488 | INFO     | all payload control threads have been joined
[2025-12-14 06:12:14] 2025-12-14 05:11:49,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 06:12:14] 2025-12-14 05:11:49,766 | INFO     | all job control threads have been joined
[2025-12-14 06:12:14] 2025-12-14 05:11:49,844 | INFO     | [job] retrieve thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:49,845 | INFO     | [job] queue monitor thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:49,880 | INFO     | [data] copytool_in thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:49,986 | INFO     | [job] job monitor thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,128 | INFO     | [payload] validate_post thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,345 | INFO     | [data] control thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,494 | INFO     | [payload] control thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,578 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,688 | INFO     | [job] validate thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,745 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,772 | INFO     | [job] control thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:50,876 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:51,115 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:51,142 | INFO     | [payload] failed_post thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:51,731 | INFO     | [data] copytool_out thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:11:52,846 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 06:12:14] 2025-12-14 05:12:07,320 | INFO     | [monitor] cgroup control has ended
[2025-12-14 06:12:14] 2025-12-14 05:12:09,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570553878336)>', '<ExcThread(monitor, started 140569682622208)>']
[2025-12-14 06:12:14] 2025-12-14 05:12:09,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 06:12:14] 2025-12-14 05:12:09,942 | INFO     | [monitor] control thread has ended
[2025-12-14 06:12:14] 2025-12-14 05:12:14,239 | INFO     | all workflow threads have been joined
[2025-12-14 06:12:14] 2025-12-14 05:12:14,239 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 06:12:14] 2025-12-14 05:12:14,239 | INFO     | traces error code: 0
[2025-12-14 06:12:14] 2025-12-14 05:12:14,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 06:12:14] 2025-12-14 05:12:14,319 [wrapper] ==== pilot stdout END ====
[2025-12-14 06:12:14] 2025-12-14 05:12:14,323 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 06:12:14] 2025-12-14 05:12:14,328 [wrapper] pilotpid: 740995
[2025-12-14 06:12:14] 2025-12-14 05:12:14,332 [wrapper] Pilot exit status: 0
[2025-12-14 06:12:14] 2025-12-14 05:12:14,344 [wrapper] pandaids: 6929503375
[2025-12-14 06:12:14] 2025-12-14 05:12:14,366 [wrapper] cleanup supervisor_pilot  757157 740996
[2025-12-14 06:12:14] 2025-12-14 05:12:14,370 [wrapper] Test setup, not cleaning
[2025-12-14 06:12:14] 2025-12-14 05:12:14,374 [wrapper] apfmon messages muted
[2025-12-14 06:12:14] 2025-12-14 05:12:14,378 [wrapper] ==== wrapper stdout END ====
[2025-12-14 06:12:14] 2025-12-14 05:12:14,382 [wrapper] ==== wrapper stderr END ====
[2025-12-14 06:12:14]  *** Error codes and diagnostics ***
[2025-12-14 06:12:14]     "exeErrorCode": 0,
[2025-12-14 06:12:14]     "exeErrorDiag": "",
[2025-12-14 06:12:14]     "pilotErrorCode": 0,
[2025-12-14 06:12:14]     "pilotErrorDiag": "",
[2025-12-14 06:12:14]  *** Listing of results directory ***
[2025-12-14 06:12:14] total 376612
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc    579449 Dec 13 18:18 pilot3.tar.gz
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc      5112 Dec 13 18:19 queuedata.json
[2025-12-14 06:12:14] -rwx------ 1 boinc boinc     36322 Dec 13 18:20 runpilot2-wrapper.sh
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc       100 Dec 14 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 06:12:14] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 05:03 run_atlas
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc       105 Dec 14 05:03 job.xml
[2025-12-14 06:12:14] -rw-r--r-- 2 boinc boinc 200408544 Dec 14 05:03 EVNT.47898875._000030.pool.root.1
[2025-12-14 06:12:14] -rw-r--r-- 2 boinc boinc    592388 Dec 14 05:03 input.tar.gz
[2025-12-14 06:12:14] -rw-r--r-- 2 boinc boinc     15847 Dec 14 05:03 start_atlas.sh
[2025-12-14 06:12:14] drwxrwx--x 2 boinc boinc      4096 Dec 14 05:03 shared
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc         0 Dec 14 05:03 boinc_setup_complete
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc      6367 Dec 14 05:03 init_data.xml
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc         0 Dec 14 05:03 boinc_lockfile
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc      2496 Dec 14 05:03 pandaJob.out
[2025-12-14 06:12:14] -rw------- 1 boinc boinc    991736 Dec 14 05:04 agis_schedconf.cvmfs.json
[2025-12-14 06:12:14] -rw------- 1 boinc boinc   1516240 Dec 14 05:04 agis_ddmendpoints.agis.ALL.json
[2025-12-14 06:12:14] drwx------ 5 boinc boinc      4096 Dec 14 05:04 pilot3
[2025-12-14 06:12:14] -rw------- 1 boinc boinc 179635932 Dec 14 06:11 HITS.47898878._000728.pool.root.1
[2025-12-14 06:12:14] -rw------- 1 boinc boinc        95 Dec 14 06:11 pilot_heartbeat.json
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc       529 Dec 14 06:11 boinc_task_state.xml
[2025-12-14 06:12:14] -rw------- 1 boinc boinc      1018 Dec 14 06:11 memory_monitor_summary.json
[2025-12-14 06:12:14] -rw------- 1 boinc boinc    244278 Dec 14 06:11 log.47898878._000728.job.log.tgz.1
[2025-12-14 06:12:14] -rw------- 1 boinc boinc      7746 Dec 14 06:11 heartbeat.json
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc      8192 Dec 14 06:11 boinc_mmap_file
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc        27 Dec 14 06:11 wrapper_checkpoint.txt
[2025-12-14 06:12:14] -rw------- 1 boinc boinc      4742 Dec 14 06:12 pilotlog.txt
[2025-12-14 06:12:14] -rw------- 1 boinc boinc    605936 Dec 14 06:12 log.47898878._000728.job.log.1
[2025-12-14 06:12:14] -rw------- 1 boinc boinc       357 Dec 14 06:12 output.list
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc       620 Dec 14 06:12 runtime_log
[2025-12-14 06:12:14] -rw------- 1 boinc boinc    870400 Dec 14 06:12 result.tar.gz
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc      8902 Dec 14 06:12 runtime_log.err
[2025-12-14 06:12:14] -rw------- 1 boinc boinc       659 Dec 14 06:12 hgUKDm1Sio8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCrPKDmD5viMm.diag
[2025-12-14 06:12:14] -rw-r--r-- 1 boinc boinc     10755 Dec 14 06:12 stderr.txt
[2025-12-14 06:12:14] HITS file was successfully produced:
[2025-12-14 06:12:14] -rw------- 1 boinc boinc 179635932 Dec 14 06:11 shared/HITS.pool.root.1
[2025-12-14 06:12:14]  *** Contents of shared directory: ***
[2025-12-14 06:12:14] total 372596
[2025-12-14 06:12:14] -rw-r--r-- 2 boinc boinc 200408544 Dec 14 05:03 ATLAS.root_0
[2025-12-14 06:12:14] -rw-r--r-- 2 boinc boinc    592388 Dec 14 05:03 input.tar.gz
[2025-12-14 06:12:14] -rw-r--r-- 2 boinc boinc     15847 Dec 14 05:03 start_atlas.sh
[2025-12-14 06:12:14] -rw------- 1 boinc boinc 179635932 Dec 14 06:11 HITS.pool.root.1
[2025-12-14 06:12:14] -rw------- 1 boinc boinc    870400 Dec 14 06:12 result.tar.gz
06:12:15 (737208): run_atlas exited; CPU time 15137.301596
06:12:15 (737208): called boinc_finish(0)

</stderr_txt>
]]>

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