Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:13 (771840): wrapper (7.7.26015): starting
22:37:13 (771840): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 22:37:13] Arguments: --nthreads 9
[2025-12-13 22:37:13] Threads: 9
[2025-12-13 22:37:13] Checking for CVMFS
[2025-12-13 22:37:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 22:37:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 22:37:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 22:37:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 22:37:15] 2.13.2.0 5582 58290 199232 153982 3 557 23609075 39288833 9200 16776704 0 48057804 99.649 46600136 37677 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 22:37:15] CVMFS is ok
[2025-12-13 22:37:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 22:37:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 22:37:15] Further information can be found at the LHC@home message board.
[2025-12-13 22:37:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 22:37:15] Checking for apptainer binary...
[2025-12-13 22:37:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 22:37:15] Running /usr/bin/apptainer --version
[2025-12-13 22:37:15] apptainer version 1.4.4-1.el9
[2025-12-13 22:37:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 22:37:16] c-210-22.aglt2.org
[2025-12-13 22:37:16] apptainer works
[2025-12-13 22:37:16] Set ATHENA_PROC_NUMBER=9
[2025-12-13 22:37:16] Set ATHENA_CORE_NUMBER=9
[2025-12-13 22:37:16] Starting ATLAS job with PandaID=6929502980
[2025-12-13 22:37:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 06:27:15]  *** The last 200 lines of the pilot log: ***
[2025-12-14 06:27:15] 2025-12-14 09:02:20,108 | INFO     | time since job start (19448s) is within the limit (174528.0s)
[2025-12-14 06:27:15] 2025-12-14 09:02:21,531 | INFO     | monitor loop #1269: job 0:6929502980 is in state 'finished'
[2025-12-14 06:27:15] 2025-12-14 09:02:21,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 06:27:15] 2025-12-14 09:02:22,118 | INFO     | time since job start (19450s) is within the limit (174528.0s)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,052 | INFO     | monitor loop #1270: job 0:6929502980 is in state 'finished'
[2025-12-14 06:27:15] 2025-12-14 09:02:24,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,133 | INFO     | time since job start (19452s) is within the limit (174528.0s)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,802 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 06:27:15] 2025-12-14 09:02:24,813 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8980249999995
[2025-12-14 06:27:15] 2025-12-14 09:02:24,850 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6929502980/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,877 | INFO     | extracted standard info from prmon json
[2025-12-14 06:27:15] 2025-12-14 09:02:24,877 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 06:27:15] 2025-12-14 09:02:24,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 06:27:15] 2025-12-14 09:02:24,882 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 06:27:15] 2025-12-14 09:02:24,883 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 06:27:15] 2025-12-14 09:02:24,900 | INFO     | fitting pss+swap vs Time
[2025-12-14 06:27:15] 2025-12-14 09:02:24,912 | INFO     | sum of square deviations: 9783929081.6297
[2025-12-14 06:27:15] 2025-12-14 09:02:24,916 | INFO     | sum of deviations: -7372328885.797489
[2025-12-14 06:27:15] 2025-12-14 09:02:24,916 | INFO     | mean x: 1765693241.205696
[2025-12-14 06:27:15] 2025-12-14 09:02:24,916 | INFO     | mean y: 2570374.4430379746
[2025-12-14 06:27:15] 2025-12-14 09:02:24,916 | INFO     | intersect: 1333045194.629477
[2025-12-14 06:27:15] 2025-12-14 09:02:24,929 | INFO     | chi2: 3.1575857065178448
[2025-12-14 06:27:15] 2025-12-14 09:02:24,930 | INFO     | sum of square deviations: 9326776656.784555
[2025-12-14 06:27:15] 2025-12-14 09:02:24,946 | INFO     | sum of deviations: 13051100955.79421
[2025-12-14 06:27:15] 2025-12-14 09:02:24,946 | INFO     | mean x: 1765693088.70418
[2025-12-14 06:27:15] 2025-12-14 09:02:24,946 | INFO     | mean y: 2577100.389067524
[2025-12-14 06:27:15] 2025-12-14 09:02:24,946 | INFO     | intersect: -2468184193.2099743
[2025-12-14 06:27:15] 2025-12-14 09:02:24,947 | INFO     | chi2: 2.4730748143081356
[2025-12-14 06:27:15] 2025-12-14 09:02:24,947 | INFO     | current chi2=2.4730748143081356 (change=21.678299683101276 %)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,947 | INFO     | right removable region: 310
[2025-12-14 06:27:15] 2025-12-14 09:02:24,948 | INFO     | sum of square deviations: 9326736885.530504
[2025-12-14 06:27:15] 2025-12-14 09:02:24,960 | INFO     | sum of deviations: -75728405183.4663
[2025-12-14 06:27:15] 2025-12-14 09:02:24,960 | INFO     | mean x: 1765693393.7138264
[2025-12-14 06:27:15] 2025-12-14 09:02:24,960 | INFO     | mean y: 2593065.7363344054
[2025-12-14 06:27:15] 2025-12-14 09:02:24,961 | INFO     | intersect: 14339133957.800402
[2025-12-14 06:27:15] 2025-12-14 09:02:24,961 | INFO     | chi2: 1.079360966177492
[2025-12-14 06:27:15] 2025-12-14 09:02:24,961 | INFO     | current chi2=1.079360966177492 (change=65.81689092557362 %)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,962 | INFO     | sum of square deviations: 8884085716.614439
[2025-12-14 06:27:15] 2025-12-14 09:02:24,977 | INFO     | sum of deviations: -81303875917.1764
[2025-12-14 06:27:15] 2025-12-14 09:02:24,977 | INFO     | mean x: 1765693546.2091503
[2025-12-14 06:27:15] 2025-12-14 09:02:24,977 | INFO     | mean y: 2594970.705882353
[2025-12-14 06:27:15] 2025-12-14 09:02:24,977 | INFO     | intersect: 16161571095.877169
[2025-12-14 06:27:15] 2025-12-14 09:02:24,978 | INFO     | chi2: 1.044319407042506
[2025-12-14 06:27:15] 2025-12-14 09:02:24,978 | INFO     | current chi2=1.044319407042506 (change=3.246509762075636 %)
[2025-12-14 06:27:15] 2025-12-14 09:02:24,978 | INFO     | left removable region: 20
[2025-12-14 06:27:15] 2025-12-14 09:02:24,989 | INFO     | sum of square deviations: 7562073575.18623
[2025-12-14 06:27:15] 2025-12-14 09:02:24,991 | INFO     | sum of deviations: -35761606944.38622
[2025-12-14 06:27:15] 2025-12-14 09:02:24,991 | INFO     | mean x: 1765693668.1931036
[2025-12-14 06:27:15] 2025-12-14 09:02:24,992 | INFO     | mean y: 2593096.5068965517
[2025-12-14 06:27:15] 2025-12-14 09:02:24,992 | INFO     | intersect: 8352689444.8564625
[2025-12-14 06:27:15] 2025-12-14 09:02:25,004 | INFO     | chi2: 0.24676566991593518
[2025-12-14 06:27:15] 2025-12-14 09:02:25,005 | INFO     | current memory leak: -4.73 B/s (using 290 data points, chi2=0.25)
[2025-12-14 06:27:15] 2025-12-14 09:02:25,005 | INFO     | could have reported an average CPU frequency of 2599 MHz (14 samples)
[2025-12-14 06:27:15] 2025-12-14 09:02:25,006 | INFO     | ..............................
[2025-12-14 06:27:15] 2025-12-14 09:02:25,006 | INFO     | . Timing measurements:
[2025-12-14 06:27:15] 2025-12-14 09:02:25,006 | INFO     | . get job = 0 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,006 | INFO     | . initial setup = 5 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,006 | INFO     | . payload setup = 45 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,006 | INFO     | . stage-in = 0 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,011 | INFO     | . payload execution = 19298 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,011 | INFO     | . stage-out = 3 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,011 | INFO     | . log creation = 0 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,012 | INFO     | ..............................
[2025-12-14 06:27:15] 2025-12-14 09:02:25,917 | INFO     | 
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | job summary report
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | --------------------------------------------------
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | PanDA job id: 6929502980
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | task id: 47898878
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | errors: (none)
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | pilot state: finished 
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | transexitcode: 0
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | exeerrorcode: 0
[2025-12-14 06:27:15] 2025-12-14 09:02:25,918 | INFO     | exeerrordiag: 
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | exitcode: 0
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | exitmsg: OK
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | cpuconsumptiontime: 48244 s
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | nevents: 400
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | neventsw: 0
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | pid: 783948
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | pgrp: 783948
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | corecount: 9
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | event service: False
[2025-12-14 06:27:15] 2025-12-14 09:02:25,919 | INFO     | sizes: {0: 2283705, 1: 2283789, 2: 2283817, 3: 2283988, 14: 2284016, 24: 2284044, 30: 2284462, 35: 2284490, 19347: 2317810, 19348: 2317809, 19353: 2326863, 19356: 
[2025-12-14 06:27:15] 2025-12-14 09:02:25,920 | INFO     | --------------------------------------------------
[2025-12-14 06:27:15] 2025-12-14 09:02:25,920 | INFO     | 
[2025-12-14 06:27:15] 2025-12-14 09:02:25,920 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-14 06:27:15] 2025-12-14 09:02:26,021 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,022 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,022 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,022 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,023 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 06:27:15] 2025-12-14 09:02:26,024 | INFO     | job 6929502980 has completed (purged errors)
[2025-12-14 06:27:15] 2025-12-14 09:02:26,025 | INFO     | overall cleanup function is called
[2025-12-14 06:27:15] 2025-12-14 09:02:27,033 | INFO     | --- collectZombieJob: --- 10, [783948]
[2025-12-14 06:27:15] 2025-12-14 09:02:27,034 | INFO     | zombie collector waiting for pid 783948
[2025-12-14 06:27:15] 2025-12-14 09:02:27,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 06:27:15] 2025-12-14 09:02:27,034 | INFO     | collected zombie processes
[2025-12-14 06:27:15] 2025-12-14 09:02:27,034 | INFO     | will attempt to kill all subprocesses of pid=783948
[2025-12-14 06:27:15] 2025-12-14 09:02:27,884 | INFO     | process IDs to be killed: [783948] (in reverse order)
[2025-12-14 06:27:15] 2025-12-14 09:02:28,141 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 06:27:15] 2025-12-14 09:02:28,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 06:27:15] 2025-12-14 09:02:28,153 | INFO     | did not find any defunct processes belonging to 783948
[2025-12-14 06:27:15] 2025-12-14 09:02:28,186 | INFO     | did not find any defunct processes belonging to 783948
[2025-12-14 06:27:15] 2025-12-14 09:02:28,186 | INFO     | ready for new job
[2025-12-14 06:27:15] 2025-12-14 09:02:28,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 06:27:15] 2025-12-14 09:02:28,189 | INFO     | ***************************************
[2025-12-14 06:27:15] 2025-12-14 09:02:28,189 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 06:27:15] 2025-12-14 09:02:28,189 | INFO     | ***************************************
[2025-12-14 06:27:15] 2025-12-14 09:02:28,189 | INFO     | 
[2025-12-14 06:27:15] 2025-12-14 09:02:28,191 | INFO     | architecture information:
[2025-12-14 06:27:15] 2025-12-14 09:02:28,192 | INFO     | executing command: cat /etc/os-release
[2025-12-14 06:27:15] 2025-12-14 09:02:28,210 | INFO     | cat /etc/os-release:
[2025-12-14 06:27:15] NAME="CentOS Linux"
[2025-12-14 06:27:15] VERSION="7 (Core)"
[2025-12-14 06:27:15] ID="centos"
[2025-12-14 06:27:15] ID_LIKE="rhel fedora"
[2025-12-14 06:27:15] VERSION_ID="7"
[2025-12-14 06:27:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 06:27:15] ANSI_COLOR="0;31"
[2025-12-14 06:27:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 06:27:15] HOME_URL="https://www.centos.org/"
[2025-12-14 06:27:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 06:27:15] 
[2025-12-14 06:27:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 06:27:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 06:27:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 06:27:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 06:27:15] 
[2025-12-14 06:27:15] 2025-12-14 09:02:28,210 | INFO     | ***************************************
[2025-12-14 06:27:15] 2025-12-14 09:02:28,713 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-14 06:27:15] 2025-12-14 09:02:28,765 | INFO     | sufficient remaining disk space (52599717888 B)
[2025-12-14 06:27:15] 2025-12-14 09:02:28,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 06:27:15] 2025-12-14 09:02:28,766 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 06:27:15] 2025-12-14 09:02:28,766 | INFO     | update_server=False
[2025-12-14 06:27:15] 2025-12-14 09:02:28,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 06:27:15] 2025-12-14 09:02:28,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 06:27:15] 2025-12-14 09:02:29,023 | INFO     | all job control threads have been joined
[2025-12-14 06:27:15] 2025-12-14 09:02:29,072 | INFO     | all data control threads have been joined
[2025-12-14 06:27:15] 2025-12-14 09:02:29,095 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 06:27:15] 2025-12-14 09:02:29,096 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 06:27:15] 2025-12-14 09:02:29,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 06:27:15] 2025-12-14 09:02:29,096 | INFO     | will abort loop
[2025-12-14 06:27:15] 2025-12-14 09:02:29,772 | INFO     | [job] retrieve thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:29,782 | INFO     | [payload] failed_post thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:29,866 | INFO     | [payload] validate_post thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,029 | INFO     | [job] control thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,079 | INFO     | [data] control thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,098 | INFO     | all payload control threads have been joined
[2025-12-14 06:27:15] 2025-12-14 09:02:30,103 | INFO     | [job] job monitor thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,138 | INFO     | [job] validate thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 06:27:15] 2025-12-14 09:02:30,774 | INFO     | [data] copytool_out thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:30,849 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:31,104 | INFO     | [payload] control thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:31,109 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:31,138 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:31,184 | INFO     | [data] copytool_in thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:31,201 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 06:27:15] 2025-12-14 09:02:31,500 | INFO     | [job] queue monitor thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:35,246 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 06:27:15] 2025-12-14 09:02:46,805 | INFO     | [monitor] cgroup control has ended
[2025-12-14 06:27:15] 2025-12-14 09:02:46,968 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796913538880)>', '<ExcThread(monitor, started 139796286535424)>']
[2025-12-14 06:27:15] 2025-12-14 09:02:51,995 | INFO     | all workflow threads have been joined
[2025-12-14 06:27:15] 2025-12-14 09:02:51,996 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 06:27:15] 2025-12-14 09:02:51,996 | INFO     | traces error code: 0
[2025-12-14 06:27:15] 2025-12-14 09:02:51,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 06:27:15] 2025-12-14 09:02:57,615 | INFO     | PID=776635 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 06:27:15] 2025-12-14 09:02:57,615 | INFO     | .. there are 8 such processes running
[2025-12-14 06:27:15] 2025-12-14 09:02:57,616 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 06:27:15] 2025-12-14 09:02:57,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 06:27:15] 2025-12-14 09:02:57,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 06:27:15] 2025-12-14 09:02:57,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 06:27:15] 2025-12-14 09:02:57,617 | INFO     | [monitor] control thread has ended
[2025-12-14 06:27:15] 2025-12-14 09:02:57,830 [wrapper] ==== pilot stdout END ====
[2025-12-14 06:27:15] 2025-12-14 09:02:57,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 06:27:15] 2025-12-14 09:02:57,851 [wrapper] pilotpid: 776635
[2025-12-14 06:27:15] 2025-12-14 09:02:57,861 [wrapper] Pilot exit status: 0
[2025-12-14 06:27:15] 2025-12-14 09:02:57,928 [wrapper] pandaids: 6929502980
[2025-12-14 06:27:15] 2025-12-14 09:02:58,030 [wrapper] cleanup supervisor_pilot 1192868 776636
[2025-12-14 06:27:15] 2025-12-14 09:02:58,033 [wrapper] Test setup, not cleaning
[2025-12-14 06:27:15] 2025-12-14 09:02:58,038 [wrapper] apfmon messages muted
[2025-12-14 06:27:15] 2025-12-14 09:02:58,047 [wrapper] ==== wrapper stdout END ====
[2025-12-14 06:27:15] 2025-12-14 09:02:58,078 [wrapper] ==== wrapper stderr END ====
[2025-12-14 06:27:15]  *** Error codes and diagnostics ***
[2025-12-14 06:27:15]     "exeErrorCode": 0,
[2025-12-14 06:27:15]     "exeErrorDiag": "",
[2025-12-14 06:27:15]     "pilotErrorCode": 0,
[2025-12-14 06:27:15]     "pilotErrorDiag": "",
[2025-12-14 06:27:15]  *** Listing of results directory ***
[2025-12-14 06:27:15] total 377444
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 12:18 pilot3.tar.gz
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 12:19 queuedata.json
[2025-12-14 06:27:15] -rwx------. 1 boincer umatlas     36322 Dec 13 12:20 runpilot2-wrapper.sh
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas       100 Dec 13 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 06:27:15] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 22:37 run_atlas
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas       105 Dec 13 22:37 job.xml
[2025-12-14 06:27:15] -rw-r--r--. 2 boincer umatlas 196197311 Dec 13 22:37 EVNT.47898875._000019.pool.root.1
[2025-12-14 06:27:15] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 22:37 start_atlas.sh
[2025-12-14 06:27:15] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 22:37 shared
[2025-12-14 06:27:15] -rw-r--r--. 2 boincer umatlas    592387 Dec 13 22:37 input.tar.gz
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas         0 Dec 13 22:37 boinc_lockfile
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas      2494 Dec 13 22:37 pandaJob.out
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas        57 Dec 13 22:37 setup.sh.local
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas    991736 Dec 13 22:38 agis_schedconf.cvmfs.json
[2025-12-14 06:27:15] drwx------. 5 boincer umatlas      4096 Dec 13 22:38 pilot3
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas 180285419 Dec 14 04:00 HITS.47898878._000451.pool.root.1
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas       530 Dec 14 04:00 boinc_task_state.xml
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas      1042 Dec 14 04:01 memory_monitor_summary.json
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas   1516240 Dec 14 04:01 agis_ddmendpoints.agis.ALL.json
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas    526929 Dec 14 04:01 log.47898878._000451.job.log.tgz.1
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas      7810 Dec 14 04:02 heartbeat.json
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas        95 Dec 14 04:02 pilot_heartbeat.json
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas       821 Dec 14 04:02 pilotlog.txt
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas   2537665 Dec 14 04:02 log.47898878._000451.job.log.1
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas       357 Dec 14 04:02 output.list
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas       620 Dec 14 04:02 runtime_log
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas   3082240 Dec 14 04:02 result.tar.gz
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas      9343 Dec 14 04:02 runtime_log.err
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas       657 Dec 14 04:02 Bt8MDmzSio8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhxTKDm6P7gKo.diag
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas      6660 Dec 14 06:20 init_data.xml
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas        27 Dec 14 06:26 wrapper_checkpoint.txt
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 06:27 boinc_mmap_file
[2025-12-14 06:27:15] -rw-r--r--. 1 boincer umatlas      2138 Dec 14 06:27 stderr.txt
[2025-12-14 06:27:15] HITS file was successfully produced:
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas 180285419 Dec 14 04:00 shared/HITS.pool.root.1
[2025-12-14 06:27:15]  *** Contents of shared directory: ***
[2025-12-14 06:27:15] total 371272
[2025-12-14 06:27:15] -rw-r--r--. 2 boincer umatlas 196197311 Dec 13 22:37 ATLAS.root_0
[2025-12-14 06:27:15] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 22:37 start_atlas.sh
[2025-12-14 06:27:15] -rw-r--r--. 2 boincer umatlas    592387 Dec 13 22:37 input.tar.gz
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas 180285419 Dec 14 04:00 HITS.pool.root.1
[2025-12-14 06:27:15] -rw-------. 1 boincer umatlas   3082240 Dec 14 04:02 result.tar.gz
06:27:17 (771840): run_atlas exited; CPU time 48678.180253
06:27:17 (771840): called boinc_finish(0)

</stderr_txt>
]]>

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