Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:27:09 (25917): wrapper (7.7.26015): starting
05:27:09 (25917): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 05:27:09] Arguments: --nthreads 8
[2025-12-14 05:27:09] Threads: 8
[2025-12-14 05:27:09] Checking for CVMFS
[2025-12-14 05:27:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 05:27:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 05:27:11] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 05:27:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 05:27:12] 2.11.2.0 8605 110812 126656 153984 1 60 15569220 25165824 4412 130560 38 34564259 99.793 26553485 1912 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 05:27:12] CVMFS is ok
[2025-12-14 05:27:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 05:27:12] Checking for apptainer binary...
[2025-12-14 05:27:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 05:27:12] Running /usr/bin/apptainer --version
[2025-12-14 05:27:13] apptainer version 1.3.2-1.el7
[2025-12-14 05:27:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 05:27:22] cg-vwn213.simple-grid.lan
[2025-12-14 05:27:22] apptainer works
[2025-12-14 05:27:22] Set ATHENA_PROC_NUMBER=8
[2025-12-14 05:27:22] Set ATHENA_CORE_NUMBER=8
[2025-12-14 05:27:22] Starting ATLAS job with PandaID=6929308302
[2025-12-14 05:27:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 11:12:39]  *** The last 200 lines of the pilot log: ***
[2025-12-14 11:12:39] 2025-12-14 10:11:49,915 | INFO     | .. there are 9 such processes running
[2025-12-14 11:12:39] 2025-12-14 10:11:49,979 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 11:12:39] 2025-12-14 10:11:49,981 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 11:12:39] 2025-12-14 10:11:49,983 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929308302/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 11:12:39] 2025-12-14 10:11:49,984 | INFO     | extracted standard info from prmon json
[2025-12-14 11:12:39] 2025-12-14 10:11:49,984 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 11:12:39] 2025-12-14 10:11:49,984 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 11:12:39] 2025-12-14 10:11:49,984 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 11:12:39] 2025-12-14 10:11:49,985 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 11:12:39] 2025-12-14 10:11:49,998 | INFO     | fitting pss+swap vs Time
[2025-12-14 11:12:39] 2025-12-14 10:11:49,999 | INFO     | sum of square deviations: 10842205148.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,003 | INFO     | sum of deviations: 90040013434.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,003 | INFO     | mean x: 1765697048.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,003 | INFO     | mean y: 2467893.629969419
[2025-12-14 11:12:39] 2025-12-14 10:11:50,003 | INFO     | intersect: -14660913194.637016
[2025-12-14 11:12:39] 2025-12-14 10:11:50,004 | INFO     | chi2: 5.935818780391457
[2025-12-14 11:12:39] 2025-12-14 10:11:50,005 | INFO     | sum of square deviations: 10352419220.5
[2025-12-14 11:12:39] 2025-12-14 10:11:50,008 | INFO     | sum of deviations: 109929005819.49998
[2025-12-14 11:12:39] 2025-12-14 10:11:50,009 | INFO     | mean x: 1765696895.5
[2025-12-14 11:12:39] 2025-12-14 10:11:50,009 | INFO     | mean y: 2474003.201863354
[2025-12-14 11:12:39] 2025-12-14 10:11:50,009 | INFO     | intersect: -18746892706.806416
[2025-12-14 11:12:39] 2025-12-14 10:11:50,009 | INFO     | chi2: 5.201380987146219
[2025-12-14 11:12:39] 2025-12-14 10:11:50,010 | INFO     | current chi2=5.201380987146219 (change=12.37298206729961 %)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,010 | INFO     | right removable region: 321
[2025-12-14 11:12:39] 2025-12-14 10:11:50,010 | INFO     | sum of square deviations: 10352419220.5
[2025-12-14 11:12:39] 2025-12-14 10:11:50,014 | INFO     | sum of deviations: -19023079146.499996
[2025-12-14 11:12:39] 2025-12-14 10:11:50,014 | INFO     | mean x: 1765697200.5
[2025-12-14 11:12:39] 2025-12-14 10:11:50,014 | INFO     | mean y: 2501824.7732919254
[2025-12-14 11:12:39] 2025-12-14 10:11:50,014 | INFO     | intersect: 3247057215.9761124
[2025-12-14 11:12:39] 2025-12-14 10:11:50,015 | INFO     | chi2: 1.7068594732700644
[2025-12-14 11:12:39] 2025-12-14 10:11:50,015 | INFO     | current chi2=1.7068594732700644 (change=71.2447509531701 %)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,016 | INFO     | sum of square deviations: 9877610318.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,019 | INFO     | sum of deviations: -56512447465.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,019 | INFO     | mean x: 1765697353.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,019 | INFO     | mean y: 2513790.949526814
[2025-12-14 11:12:39] 2025-12-14 10:11:50,019 | INFO     | intersect: 10104540059.253065
[2025-12-14 11:12:39] 2025-12-14 10:11:50,020 | INFO     | chi2: 0.9634554717679773
[2025-12-14 11:12:39] 2025-12-14 10:11:50,020 | INFO     | current chi2=0.9634554717679773 (change=43.55390781397172 %)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,021 | INFO     | sum of square deviations: 9417545878.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,024 | INFO     | sum of deviations: -53100635694.5
[2025-12-14 11:12:39] 2025-12-14 10:11:50,024 | INFO     | mean x: 1765697505.5
[2025-12-14 11:12:39] 2025-12-14 10:11:50,025 | INFO     | mean y: 2512642.246794872
[2025-12-14 11:12:39] 2025-12-14 10:11:50,025 | INFO     | intersect: 9958361140.449663
[2025-12-14 11:12:39] 2025-12-14 10:11:50,025 | INFO     | chi2: 0.9481223494798008
[2025-12-14 11:12:39] 2025-12-14 10:11:50,025 | INFO     | current chi2=0.9481223494798008 (change=1.591471815510026 %)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,026 | INFO     | left removable region: 30
[2025-12-14 11:12:39] 2025-12-14 10:11:50,026 | INFO     | sum of square deviations: 7641036290.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,029 | INFO     | sum of deviations: -326781880.00000197
[2025-12-14 11:12:39] 2025-12-14 10:11:50,030 | INFO     | mean x: 1765697780.0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,030 | INFO     | mean y: 2508163.6082474226
[2025-12-14 11:12:39] 2025-12-14 10:11:50,030 | INFO     | intersect: 78021224.6854943
[2025-12-14 11:12:39] 2025-12-14 10:11:50,030 | INFO     | chi2: 0.060247935474833224
[2025-12-14 11:12:39] 2025-12-14 10:11:50,031 | INFO     | current memory leak: -0.04 B/s (using 291 data points, chi2=0.06)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,031 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | ..............................
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . Timing measurements:
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . get job = 0 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . initial setup = 9 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . payload setup = 119 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . stage-in = 0 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . payload execution = 20054 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . stage-out = 3 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | . log creation = 1 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,032 | INFO     | ..............................
[2025-12-14 11:12:39] 2025-12-14 10:11:50,168 | INFO     | 
[2025-12-14 11:12:39] 2025-12-14 10:11:50,168 | INFO     | job summary report
[2025-12-14 11:12:39] 2025-12-14 10:11:50,168 | INFO     | --------------------------------------------------
[2025-12-14 11:12:39] 2025-12-14 10:11:50,168 | INFO     | PanDA job id: 6929308302
[2025-12-14 11:12:39] 2025-12-14 10:11:50,168 | INFO     | task id: 47898836
[2025-12-14 11:12:39] 2025-12-14 10:11:50,168 | INFO     | errors: (none)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | pilot state: finished 
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | transexitcode: 0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | exeerrorcode: 0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | exeerrordiag: 
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | exitcode: 0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | exitmsg: OK
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | cpuconsumptiontime: 76893 s
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | nevents: 400
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | neventsw: 0
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | pid: 3848
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | pgrp: 3848
[2025-12-14 11:12:39] 2025-12-14 10:11:50,169 | INFO     | corecount: 8
[2025-12-14 11:12:39] 2025-12-14 10:11:50,170 | INFO     | event service: False
[2025-12-14 11:12:39] 2025-12-14 10:11:50,170 | INFO     | sizes: {0: 2283834, 1: 2284033, 12: 2284033, 23: 2284061, 33: 2284089, 44: 2284145, 55: 2284301, 66: 2284329, 76: 2284357, 85: 2284675, 87: 2284703, 20177: 2317542
[2025-12-14 11:12:39] 2025-12-14 10:11:50,170 | INFO     | --------------------------------------------------
[2025-12-14 11:12:39] 2025-12-14 10:11:50,170 | INFO     | 
[2025-12-14 11:12:39] 2025-12-14 10:11:50,170 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-14 11:12:39] 2025-12-14 10:11:50,708 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 11:12:39] 2025-12-14 10:11:50,710 | INFO     | job 6929308302 has completed (purged errors)
[2025-12-14 11:12:39] 2025-12-14 10:11:50,711 | INFO     | overall cleanup function is called
[2025-12-14 11:12:39] 2025-12-14 10:11:51,720 | INFO     | --- collectZombieJob: --- 10, [3848]
[2025-12-14 11:12:39] 2025-12-14 10:11:51,720 | INFO     | zombie collector waiting for pid 3848
[2025-12-14 11:12:39] 2025-12-14 10:11:51,720 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 11:12:39] 2025-12-14 10:11:51,720 | INFO     | collected zombie processes
[2025-12-14 11:12:39] 2025-12-14 10:11:51,720 | INFO     | will attempt to kill all subprocesses of pid=3848
[2025-12-14 11:12:39] 2025-12-14 10:11:51,841 | INFO     | process IDs to be killed: [3848] (in reverse order)
[2025-12-14 11:12:39] 2025-12-14 10:11:52,683 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 11:12:39] 2025-12-14 10:11:52,683 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 11:12:39] 2025-12-14 10:11:52,686 | INFO     | did not find any defunct processes belonging to 3848
[2025-12-14 11:12:39] 2025-12-14 10:11:52,700 | INFO     | did not find any defunct processes belonging to 3848
[2025-12-14 11:12:39] 2025-12-14 10:11:52,700 | INFO     | ready for new job
[2025-12-14 11:12:39] 2025-12-14 10:11:52,700 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 11:12:39] 2025-12-14 10:11:52,703 | INFO     | ***************************************
[2025-12-14 11:12:39] 2025-12-14 10:11:52,703 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 11:12:39] 2025-12-14 10:11:52,703 | INFO     | ***************************************
[2025-12-14 11:12:39] 2025-12-14 10:11:52,703 | INFO     | 
[2025-12-14 11:12:39] 2025-12-14 10:11:52,704 | INFO     | pilot is running in a VM
[2025-12-14 11:12:39] 2025-12-14 10:11:52,704 | INFO     | architecture information:
[2025-12-14 11:12:39] 2025-12-14 10:11:52,725 | INFO     | executing command: cat /etc/os-release
[2025-12-14 11:12:39] 2025-12-14 10:11:52,991 | INFO     | cat /etc/os-release:
[2025-12-14 11:12:39] NAME="CentOS Linux"
[2025-12-14 11:12:39] VERSION="7 (Core)"
[2025-12-14 11:12:39] ID="centos"
[2025-12-14 11:12:39] ID_LIKE="rhel fedora"
[2025-12-14 11:12:39] VERSION_ID="7"
[2025-12-14 11:12:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 11:12:39] ANSI_COLOR="0;31"
[2025-12-14 11:12:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 11:12:39] HOME_URL="https://www.centos.org/"
[2025-12-14 11:12:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 11:12:39] 
[2025-12-14 11:12:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 11:12:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 11:12:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 11:12:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 11:12:39] 
[2025-12-14 11:12:39] 2025-12-14 10:11:52,992 | INFO     | ***************************************
[2025-12-14 11:12:39] 2025-12-14 10:11:53,496 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-14 11:12:39] 2025-12-14 10:11:53,613 | INFO     | sufficient remaining disk space (497074307072 B)
[2025-12-14 11:12:39] 2025-12-14 10:11:53,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 11:12:39] 2025-12-14 10:11:53,614 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 11:12:39] 2025-12-14 10:11:53,614 | INFO     | update_server=False
[2025-12-14 11:12:39] 2025-12-14 10:11:53,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 11:12:39] 2025-12-14 10:11:53,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 11:12:39] 2025-12-14 10:11:54,011 | INFO     | all data control threads have been joined
[2025-12-14 11:12:39] 2025-12-14 10:11:54,236 | INFO     | all job control threads have been joined
[2025-12-14 11:12:39] 2025-12-14 10:11:54,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 11:12:39] 2025-12-14 10:11:54,576 | INFO     | aborting loop
[2025-12-14 11:12:39] 2025-12-14 10:11:54,620 | INFO     | [job] retrieve thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,017 | INFO     | [data] control thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,034 | INFO     | all payload control threads have been joined
[2025-12-14 11:12:39] 2025-12-14 10:11:55,073 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 11:12:39] 2025-12-14 10:11:55,242 | INFO     | [job] control thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,402 | INFO     | [payload] validate_post thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,564 | INFO     | [job] validate thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,564 | INFO     | [data] copytool_in thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,582 | INFO     | [job] job monitor thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,598 | INFO     | [payload] failed_post thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,646 | INFO     | [data] copytool_out thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:55,976 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:56,040 | INFO     | [payload] control thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:56,120 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:56,188 | INFO     | [job] queue monitor thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:11:56,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 11:12:39] 2025-12-14 10:12:00,543 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 11:12:39] 2025-12-14 10:12:22,107 | INFO     | PID=29678 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 11:12:39] 2025-12-14 10:12:22,108 | INFO     | .. there are 9 such processes running
[2025-12-14 11:12:39] 2025-12-14 10:12:22,109 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 11:12:39] 2025-12-14 10:12:22,109 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 11:12:39] 2025-12-14 10:12:22,109 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 11:12:39] 2025-12-14 10:12:28,147 | INFO     | [monitor] cgroup control has ended
[2025-12-14 11:12:39] 2025-12-14 10:12:29,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619254146880)>', '<ExcThread(monitor, started 140618797917952)>']
[2025-12-14 11:12:39] 2025-12-14 10:12:30,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 11:12:39] 2025-12-14 10:12:30,158 | INFO     | [monitor] control thread has ended
[2025-12-14 11:12:39] 2025-12-14 10:12:34,646 | INFO     | all workflow threads have been joined
[2025-12-14 11:12:39] 2025-12-14 10:12:34,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 11:12:39] 2025-12-14 10:12:34,646 | INFO     | traces error code: 0
[2025-12-14 11:12:39] 2025-12-14 10:12:34,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 11:12:39] 2025-12-14 10:12:34,983 [wrapper] ==== pilot stdout END ====
[2025-12-14 11:12:39] 2025-12-14 10:12:35,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 11:12:39] 2025-12-14 10:12:35,123 [wrapper] pilotpid: 29678
[2025-12-14 11:12:39] 2025-12-14 10:12:35,205 [wrapper] Pilot exit status: 0
[2025-12-14 11:12:39] 2025-12-14 10:12:35,617 [wrapper] pandaids: 6929308302
[2025-12-14 11:12:39] 2025-12-14 10:12:36,601 [wrapper] cleanup supervisor_pilot  6552 29679
[2025-12-14 11:12:39] 2025-12-14 10:12:36,670 [wrapper] Test setup, not cleaning
[2025-12-14 11:12:39] 2025-12-14 10:12:36,724 [wrapper] apfmon messages muted
[2025-12-14 11:12:39] 2025-12-14 10:12:36,739 [wrapper] ==== wrapper stdout END ====
[2025-12-14 11:12:39] 2025-12-14 10:12:36,831 [wrapper] ==== wrapper stderr END ====
[2025-12-14 11:12:39]  *** Error codes and diagnostics ***
[2025-12-14 11:12:39]     "exeErrorCode": 0,
[2025-12-14 11:12:39]     "exeErrorDiag": "",
[2025-12-14 11:12:39]     "pilotErrorCode": 0,
[2025-12-14 11:12:39]     "pilotErrorDiag": "",
[2025-12-14 11:12:39]  *** Listing of results directory ***
[2025-12-14 11:12:39] total 408128
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-14 11:12:39] -rwx------. 1 boinc boinc     36322 Dec 13 12:37 runpilot2-wrapper.sh
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc      5112 Dec 13 12:41 queuedata.json
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc       100 Dec 14 05:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 11:12:39] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 05:27 run_atlas
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc       105 Dec 14 05:27 job.xml
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc      6392 Dec 14 05:27 init_data.xml
[2025-12-14 11:12:39] -rw-r--r--. 2 boinc boinc 213245062 Dec 14 05:27 EVNT.47898833._000080.pool.root.1
[2025-12-14 11:12:39] -rw-r--r--. 2 boinc boinc     15847 Dec 14 05:27 start_atlas.sh
[2025-12-14 11:12:39] drwxrwx--x. 2 boinc boinc        68 Dec 14 05:27 shared
[2025-12-14 11:12:39] -rw-r--r--. 2 boinc boinc    592402 Dec 14 05:27 input.tar.gz
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc         0 Dec 14 05:27 boinc_lockfile
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc      2548 Dec 14 05:27 pandaJob.out
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc    991728 Dec 14 05:30 agis_schedconf.cvmfs.json
[2025-12-14 11:12:39] drwx------. 5 boinc boinc      4096 Dec 14 05:30 pilot3
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc 194260418 Dec 14 11:08 HITS.47898836._001500.pool.root.1
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc       531 Dec 14 11:09 boinc_task_state.xml
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc      1012 Dec 14 11:10 memory_monitor_summary.json
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc   1516240 Dec 14 11:10 agis_ddmendpoints.agis.ALL.json
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc    549114 Dec 14 11:10 log.47898836._001500.job.log.tgz.1
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc      7770 Dec 14 11:11 heartbeat.json
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc      8192 Dec 14 11:12 boinc_mmap_file
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc        28 Dec 14 11:12 wrapper_checkpoint.txt
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc        95 Dec 14 11:12 pilot_heartbeat.json
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc      4884 Dec 14 11:12 pilotlog.txt
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc   2710381 Dec 14 11:12 log.47898836._001500.job.log.1
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc       357 Dec 14 11:12 output.list
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc       620 Dec 14 11:12 runtime_log
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc   3276800 Dec 14 11:12 result.tar.gz
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc       656 Dec 14 11:12 rxMODmr7co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUFPKDmnG5gEo.diag
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc      8817 Dec 14 11:12 runtime_log.err
[2025-12-14 11:12:39] -rw-r--r--. 1 boinc boinc     20743 Dec 14 11:12 stderr.txt
[2025-12-14 11:12:39] HITS file was successfully produced:
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc 194260418 Dec 14 11:08 shared/HITS.pool.root.1
[2025-12-14 11:12:39]  *** Contents of shared directory: ***
[2025-12-14 11:12:39] total 401752
[2025-12-14 11:12:39] -rw-r--r--. 2 boinc boinc 213245062 Dec 14 05:27 ATLAS.root_0
[2025-12-14 11:12:39] -rw-r--r--. 2 boinc boinc     15847 Dec 14 05:27 start_atlas.sh
[2025-12-14 11:12:39] -rw-r--r--. 2 boinc boinc    592402 Dec 14 05:27 input.tar.gz
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc 194260418 Dec 14 11:08 HITS.pool.root.1
[2025-12-14 11:12:39] -rw-------. 1 boinc boinc   3276800 Dec 14 11:12 result.tar.gz
11:12:41 (25917): run_atlas exited; CPU time 77189.222481
11:12:41 (25917): called boinc_finish(0)

</stderr_txt>
]]>

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