Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:43:00 (20196): wrapper (7.7.26015): starting
18:43:00 (20196): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 18:43:00] Arguments: --nthreads 12
[2025-12-13 18:43:00] Threads: 12
[2025-12-13 18:43:00] Checking for CVMFS
[2025-12-13 18:43:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 18:43:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 18:43:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 18:43:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 18:43:01] 2.11.2.0 3103 102812 99016 153977 0 59 15963529 20275201 1 130560 0 44520575 99.928 5408195 33001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 18:43:01] CVMFS is ok
[2025-12-13 18:43:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 18:43:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 18:43:01] Further information can be found at the LHC@home message board.
[2025-12-13 18:43:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 18:43:01] Checking for apptainer binary...
[2025-12-13 18:43:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 18:43:01] Running /usr/bin/apptainer --version
[2025-12-13 18:43:01] apptainer version 1.3.2-1.el7
[2025-12-13 18:43:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 18:43:02] c-115-41.aglt2.org
[2025-12-13 18:43:02] apptainer works
[2025-12-13 18:43:02] Set ATHENA_PROC_NUMBER=12
[2025-12-13 18:43:02] Set ATHENA_CORE_NUMBER=12
[2025-12-13 18:43:02] Starting ATLAS job with PandaID=6929301727
[2025-12-13 18:43:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 20:19:31]  *** The last 200 lines of the pilot log: ***
[2025-12-13 20:19:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 20:19:31]  replicas=None
[2025-12-13 20:19:31]  scope=mc23_13p6TeV
[2025-12-13 20:19:31]  status=None
[2025-12-13 20:19:31]  status_code=0
[2025-12-13 20:19:31]  storage_token=
[2025-12-13 20:19:31]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929301727/log.47898763._003839.job.log.tgz.1
[2025-12-13 20:19:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/04/log.47898763._003839.job.log.tgz.1
[2025-12-13 20:19:31]  workdir=None
[2025-12-13 20:19:31] ]
[2025-12-13 20:19:31] 2025-12-14 01:18:17,066 | INFO     | transferring file log.47898763._003839.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929301727/log.47898763._003839.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 20:19:31] 2025-12-14 01:18:17,066 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929301727/log.47898763._003839.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._003839.job
[2025-12-13 20:19:31] 2025-12-14 01:18:17,088 | INFO     | adding to output.list: log.47898763._003839.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/04/log.47898763._003839.job.log.tg
[2025-12-13 20:19:31] 2025-12-14 01:18:17,089 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 20:19:31] 2025-12-14 01:18:17,089 | INFO     | summary of transferred files:
[2025-12-13 20:19:31] 2025-12-14 01:18:17,090 | INFO     |  -- lfn=log.47898763._003839.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 20:19:31] 2025-12-14 01:18:17,090 | INFO     | stage-out finished correctly
[2025-12-13 20:19:31] 2025-12-14 01:18:17,461 | INFO     | time since job start (5700s) is within the limit (174528.0s)
[2025-12-13 20:19:31] 2025-12-14 01:18:18,811 | INFO     | monitor loop #426: job 0:6929301727 is in state 'finished'
[2025-12-13 20:19:31] 2025-12-14 01:18:18,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:19:31] 2025-12-14 01:18:19,467 | INFO     | time since job start (5702s) is within the limit (174528.0s)
[2025-12-13 20:19:31] 2025-12-14 01:18:19,705 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 20:19:31] 2025-12-14 01:18:19,778 | INFO     | job 6929301727 has state=finished
[2025-12-13 20:19:31] 2025-12-14 01:18:19,778 | INFO     | preparing for final server update for job 6929301727 in state='finished'
[2025-12-13 20:19:31] 2025-12-14 01:18:19,779 | INFO     | this job has now completed (state=finished)
[2025-12-13 20:19:31] 2025-12-14 01:18:19,779 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 20:19:31] 2025-12-14 01:18:19,779 | INFO     | log transfer has been attempted: DONE
[2025-12-13 20:19:31] 2025-12-14 01:18:19,780 | INFO     | job 6929301727 has finished - writing final server update
[2025-12-13 20:19:31] 2025-12-14 01:18:19,780 | INFO     | total number of processed events: 400 (read)
[2025-12-13 20:19:31] 2025-12-14 01:18:19,781 | INFO     | executing command: lscpu
[2025-12-13 20:19:31] 2025-12-14 01:18:19,808 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 20:19:31] 2025-12-14 01:18:21,319 | INFO     | monitor loop #427: job 0:6929301727 is in state 'finished'
[2025-12-13 20:19:31] 2025-12-14 01:18:21,320 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:19:31] 2025-12-14 01:18:21,473 | INFO     | time since job start (5704s) is within the limit (174528.0s)
[2025-12-13 20:19:31] 2025-12-14 01:18:23,478 | INFO     | time since job start (5706s) is within the limit (174528.0s)
[2025-12-13 20:19:31] 2025-12-14 01:18:23,822 | INFO     | monitor loop #428: job 0:6929301727 is in state 'finished'
[2025-12-13 20:19:31] 2025-12-14 01:18:23,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,584 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 20:19:31] 2025-12-14 01:18:24,589 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1817.8333333333333
[2025-12-13 20:19:31] 2025-12-14 01:18:24,592 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929301727/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,593 | INFO     | extracted standard info from prmon json
[2025-12-13 20:19:31] 2025-12-14 01:18:24,593 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 20:19:31] 2025-12-14 01:18:24,594 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 20:19:31] 2025-12-14 01:18:24,594 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 20:19:31] 2025-12-14 01:18:24,594 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 20:19:31] 2025-12-14 01:18:24,596 | INFO     | fitting pss+swap vs Time
[2025-12-13 20:19:31] 2025-12-14 01:18:24,597 | INFO     | sum of square deviations: 197203697.5
[2025-12-13 20:19:31] 2025-12-14 01:18:24,597 | INFO     | sum of deviations: -10739146868.0
[2025-12-13 20:19:31] 2025-12-14 01:18:24,597 | INFO     | mean x: 1765672322.5
[2025-12-13 20:19:31] 2025-12-14 01:18:24,597 | INFO     | mean y: 2791025.511627907
[2025-12-13 20:19:31] 2025-12-14 01:18:24,598 | INFO     | intersect: 96156233544.45914
[2025-12-13 20:19:31] 2025-12-14 01:18:24,598 | INFO     | chi2: 0.10148089294348797
[2025-12-13 20:19:31] 2025-12-14 01:18:24,598 | INFO     | current memory leak: -54.46 B/s (using 86 data points, chi2=0.10)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,598 | INFO     | could have reported an average CPU frequency of 2171 MHz (7 samples)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,599 | INFO     | ..............................
[2025-12-13 20:19:31] 2025-12-14 01:18:24,599 | INFO     | . Timing measurements:
[2025-12-13 20:19:31] 2025-12-14 01:18:24,599 | INFO     | . get job = 0 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,599 | INFO     | . initial setup = 2 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,599 | INFO     | . payload setup = 6 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,599 | INFO     | . stage-in = 0 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,600 | INFO     | . payload execution = 5672 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,600 | INFO     | . stage-out = 0 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,600 | INFO     | . log creation = 0 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,600 | INFO     | ..............................
[2025-12-13 20:19:31] 2025-12-14 01:18:24,674 | INFO     | 
[2025-12-13 20:19:31] 2025-12-14 01:18:24,674 | INFO     | job summary report
[2025-12-13 20:19:31] 2025-12-14 01:18:24,674 | INFO     | --------------------------------------------------
[2025-12-13 20:19:31] 2025-12-14 01:18:24,674 | INFO     | PanDA job id: 6929301727
[2025-12-13 20:19:31] 2025-12-14 01:18:24,675 | INFO     | task id: 47898763
[2025-12-13 20:19:31] 2025-12-14 01:18:24,675 | INFO     | errors: (none)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,675 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 20:19:31] 2025-12-14 01:18:24,675 | INFO     | pilot state: finished 
[2025-12-13 20:19:31] 2025-12-14 01:18:24,675 | INFO     | transexitcode: 0
[2025-12-13 20:19:31] 2025-12-14 01:18:24,676 | INFO     | exeerrorcode: 0
[2025-12-13 20:19:31] 2025-12-14 01:18:24,676 | INFO     | exeerrordiag: 
[2025-12-13 20:19:31] 2025-12-14 01:18:24,676 | INFO     | exitcode: 0
[2025-12-13 20:19:31] 2025-12-14 01:18:24,677 | INFO     | exitmsg: OK
[2025-12-13 20:19:31] 2025-12-14 01:18:24,677 | INFO     | cpuconsumptiontime: 61407 s
[2025-12-13 20:19:31] 2025-12-14 01:18:24,677 | INFO     | nevents: 400
[2025-12-13 20:19:31] 2025-12-14 01:18:24,677 | INFO     | neventsw: 0
[2025-12-13 20:19:31] 2025-12-14 01:18:24,677 | INFO     | pid: 30399
[2025-12-13 20:19:31] 2025-12-14 01:18:24,677 | INFO     | pgrp: 30399
[2025-12-13 20:19:31] 2025-12-14 01:18:24,678 | INFO     | corecount: 12
[2025-12-13 20:19:31] 2025-12-14 01:18:24,679 | INFO     | event service: False
[2025-12-13 20:19:31] 2025-12-14 01:18:24,679 | INFO     | sizes: {0: 2283952, 5: 2284214, 11: 2284270, 5683: 2310880, 5684: 2319933, 5687: 2319933, 5692: 2320255}
[2025-12-13 20:19:31] 2025-12-14 01:18:24,679 | INFO     | --------------------------------------------------
[2025-12-13 20:19:31] 2025-12-14 01:18:24,680 | INFO     | 
[2025-12-13 20:19:31] 2025-12-14 01:18:24,680 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 20:19:31] 2025-12-14 01:18:24,694 | INFO     | PID=23940 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 20:19:31] 2025-12-14 01:18:24,703 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,703 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,703 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,703 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,703 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,704 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,704 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,704 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,704 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,704 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,704 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,705 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,705 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,705 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,706 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,706 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,706 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 20:19:31] 2025-12-14 01:18:24,706 | INFO     | job 6929301727 has completed (purged errors)
[2025-12-13 20:19:31] 2025-12-14 01:18:24,706 | INFO     | overall cleanup function is called
[2025-12-13 20:19:31] 2025-12-14 01:18:25,715 | INFO     | --- collectZombieJob: --- 10, [30399]
[2025-12-13 20:19:31] 2025-12-14 01:18:25,715 | INFO     | zombie collector waiting for pid 30399
[2025-12-13 20:19:31] 2025-12-14 01:18:25,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 20:19:31] 2025-12-14 01:18:25,715 | INFO     | collected zombie processes
[2025-12-13 20:19:31] 2025-12-14 01:18:25,715 | INFO     | will attempt to kill all subprocesses of pid=30399
[2025-12-13 20:19:31] 2025-12-14 01:18:25,804 | INFO     | process IDs to be killed: [30399] (in reverse order)
[2025-12-13 20:19:31] 2025-12-14 01:18:25,858 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 20:19:31] 2025-12-14 01:18:25,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 20:19:31] 2025-12-14 01:18:25,861 | INFO     | did not find any defunct processes belonging to 30399
[2025-12-13 20:19:31] 2025-12-14 01:18:25,863 | INFO     | did not find any defunct processes belonging to 30399
[2025-12-13 20:19:31] 2025-12-14 01:18:25,863 | INFO     | ready for new job
[2025-12-13 20:19:31] 2025-12-14 01:18:25,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 20:19:31] 2025-12-14 01:18:25,864 | INFO     | ***************************************
[2025-12-13 20:19:31] 2025-12-14 01:18:25,865 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 20:19:31] 2025-12-14 01:18:25,865 | INFO     | ***************************************
[2025-12-13 20:19:31] 2025-12-14 01:18:25,865 | INFO     | 
[2025-12-13 20:19:31] 2025-12-14 01:18:25,865 | INFO     | architecture information:
[2025-12-13 20:19:31] 2025-12-14 01:18:25,866 | INFO     | executing command: cat /etc/os-release
[2025-12-13 20:19:31] 2025-12-14 01:18:25,880 | INFO     | cat /etc/os-release:
[2025-12-13 20:19:31] NAME="CentOS Linux"
[2025-12-13 20:19:31] VERSION="7 (Core)"
[2025-12-13 20:19:31] ID="centos"
[2025-12-13 20:19:31] ID_LIKE="rhel fedora"
[2025-12-13 20:19:31] VERSION_ID="7"
[2025-12-13 20:19:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 20:19:31] ANSI_COLOR="0;31"
[2025-12-13 20:19:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 20:19:31] HOME_URL="https://www.centos.org/"
[2025-12-13 20:19:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 20:19:31] 
[2025-12-13 20:19:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 20:19:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 20:19:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 20:19:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 20:19:31] 
[2025-12-13 20:19:31] 2025-12-14 01:18:25,880 | INFO     | ***************************************
[2025-12-13 20:19:31] 2025-12-14 01:18:26,382 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 20:19:31] 2025-12-14 01:18:26,399 | INFO     | sufficient remaining disk space (18531483648 B)
[2025-12-13 20:19:31] 2025-12-14 01:18:26,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 20:19:31] 2025-12-14 01:18:26,400 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 20:19:31] 2025-12-14 01:18:26,400 | INFO     | update_server=False
[2025-12-13 20:19:31] 2025-12-14 01:18:26,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 20:19:31] 2025-12-14 01:18:26,401 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:19:31] 2025-12-14 01:18:26,401 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 20:19:31] 2025-12-14 01:18:27,268 | INFO     | all data control threads have been joined
[2025-12-13 20:19:31] 2025-12-14 01:18:27,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:19:31] 2025-12-14 01:18:27,335 | INFO     | aborting loop
[2025-12-13 20:19:31] 2025-12-14 01:18:27,406 | INFO     | [job] retrieve thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:27,407 | INFO     | [job] queue monitor thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:27,550 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:27,676 | INFO     | all payload control threads have been joined
[2025-12-13 20:19:31] 2025-12-14 01:18:27,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 20:19:31] 2025-12-14 01:18:27,747 | INFO     | [data] copytool_in thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:27,913 | INFO     | all job control threads have been joined
[2025-12-13 20:19:31] 2025-12-14 01:18:27,946 | INFO     | [payload] failed_post thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,270 | INFO     | [data] control thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,340 | INFO     | [job] job monitor thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,534 | INFO     | [payload] validate_post thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,681 | INFO     | [payload] control thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,687 | INFO     | [job] validate thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,689 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,887 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:28,918 | INFO     | [job] control thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:29,685 | INFO     | [data] copytool_out thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:30,407 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:37,209 | INFO     | job.realtimelogging is not enabled
[2025-12-13 20:19:31] 2025-12-14 01:18:38,214 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 20:19:31] 2025-12-14 01:18:56,890 | INFO     | PID=23940 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 20:19:31] 2025-12-14 01:18:56,891 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 20:19:31] 2025-12-14 01:18:56,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 20:19:31] 2025-12-14 01:18:56,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 20:19:31] 2025-12-14 01:19:25,645 | INFO     | [monitor] cgroup control has ended
[2025-12-13 20:19:31] 2025-12-14 01:19:25,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040419669824)>', '<ExcThread(monitor, started 140039153514240)>']
[2025-12-13 20:19:31] 2025-12-14 01:19:26,027 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 20:19:31] 2025-12-14 01:19:26,028 | INFO     | [monitor] control thread has ended
[2025-12-13 20:19:31] 2025-12-14 01:19:30,839 | INFO     | all workflow threads have been joined
[2025-12-13 20:19:31] 2025-12-14 01:19:30,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 20:19:31] 2025-12-14 01:19:30,845 | INFO     | traces error code: 0
[2025-12-13 20:19:31] 2025-12-14 01:19:30,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 20:19:31] 2025-12-14 01:19:30,942 [wrapper] ==== pilot stdout END ====
[2025-12-13 20:19:31] 2025-12-14 01:19:30,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 20:19:31] 2025-12-14 01:19:30,950 [wrapper] pilotpid: 23940
[2025-12-13 20:19:31] 2025-12-14 01:19:30,953 [wrapper] Pilot exit status: 0
[2025-12-13 20:19:31] 2025-12-14 01:19:30,969 [wrapper] pandaids: 6929301727
[2025-12-13 20:19:31] 2025-12-14 01:19:31,015 [wrapper] cleanup supervisor_pilot  9783 23941
[2025-12-13 20:19:31] 2025-12-14 01:19:31,019 [wrapper] Test setup, not cleaning
[2025-12-13 20:19:31] 2025-12-14 01:19:31,023 [wrapper] apfmon messages muted
[2025-12-13 20:19:31] 2025-12-14 01:19:31,027 [wrapper] ==== wrapper stdout END ====
[2025-12-13 20:19:31] 2025-12-14 01:19:31,031 [wrapper] ==== wrapper stderr END ====
[2025-12-13 20:19:31]  *** Error codes and diagnostics ***
[2025-12-13 20:19:31]     "exeErrorCode": 0,
[2025-12-13 20:19:31]     "exeErrorDiag": "",
[2025-12-13 20:19:31]     "pilotErrorCode": 0,
[2025-12-13 20:19:31]     "pilotErrorDiag": "",
[2025-12-13 20:19:31]  *** Listing of results directory ***
[2025-12-13 20:19:31] total 445396
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 06:35 pilot3.tar.gz
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 06:36 queuedata.json
[2025-12-13 20:19:31] -rwx------ 1 boincer umatlas     36322 Dec 13 06:36 runpilot2-wrapper.sh
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas       100 Dec 13 18:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 20:19:31] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 18:42 run_atlas
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas       105 Dec 13 18:42 job.xml
[2025-12-13 20:19:31] -rw-r--r-- 2 boincer umatlas 225173113 Dec 13 18:43 EVNT.47898761._000229.pool.root.1
[2025-12-13 20:19:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 18:43 start_atlas.sh
[2025-12-13 20:19:31] drwxrwx--x 2 boincer umatlas      4096 Dec 13 18:43 shared
[2025-12-13 20:19:31] -rw-r--r-- 2 boincer umatlas    592388 Dec 13 18:43 input.tar.gz
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas         0 Dec 13 18:43 boinc_lockfile
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 18:43 pandaJob.out
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas        57 Dec 13 18:43 setup.sh.local
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas    991736 Dec 13 18:43 agis_schedconf.cvmfs.json
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas   1516240 Dec 13 18:43 agis_ddmendpoints.agis.ALL.json
[2025-12-13 20:19:31] drwx------ 5 boincer umatlas      4096 Dec 13 18:43 pilot3
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas      5954 Dec 13 20:11 init_data.xml
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas 224551646 Dec 13 20:17 HITS.47898763._003839.pool.root.1
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas       529 Dec 13 20:18 boinc_task_state.xml
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas      1047 Dec 13 20:18 memory_monitor_summary.json
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas    403395 Dec 13 20:18 log.47898763._003839.job.log.tgz.1
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas      7851 Dec 13 20:18 heartbeat.json
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas        95 Dec 13 20:18 pilot_heartbeat.json
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 20:19 boinc_mmap_file
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas        27 Dec 13 20:19 wrapper_checkpoint.txt
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas      4818 Dec 13 20:19 pilotlog.txt
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas    816192 Dec 13 20:19 log.47898763._003839.job.log.1
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas       357 Dec 13 20:19 output.list
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas       620 Dec 13 20:19 runtime_log
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas   1239040 Dec 13 20:19 result.tar.gz
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 20:19 runtime_log.err
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas       659 Dec 13 20:19 0ZxKDmf6co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcFTKDmfO8Tgn.diag
[2025-12-13 20:19:31] -rw-r--r-- 1 boincer umatlas     22005 Dec 13 20:19 stderr.txt
[2025-12-13 20:19:31] HITS file was successfully produced:
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas 224551646 Dec 13 20:17 shared/HITS.pool.root.1
[2025-12-13 20:19:31]  *** Contents of shared directory: ***
[2025-12-13 20:19:31] total 441000
[2025-12-13 20:19:31] -rw-r--r-- 2 boincer umatlas 225173113 Dec 13 18:43 ATLAS.root_0
[2025-12-13 20:19:31] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 18:43 start_atlas.sh
[2025-12-13 20:19:31] -rw-r--r-- 2 boincer umatlas    592388 Dec 13 18:43 input.tar.gz
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas 224551646 Dec 13 20:17 HITS.pool.root.1
[2025-12-13 20:19:31] -rw------- 1 boincer umatlas   1239040 Dec 13 20:19 result.tar.gz
20:19:33 (20196): run_atlas exited; CPU time 61366.020100
20:19:33 (20196): called boinc_finish(0)

</stderr_txt>
]]>

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