Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
00:55:42 (1365164): wrapper (7.7.26015): starting
00:55:42 (1365164): wrapper: running run_atlas (--nthreads 12)
[2025-12-16 00:55:42] Arguments: --nthreads 12
[2025-12-16 00:55:42] Threads: 12
[2025-12-16 00:55:42] Checking for CVMFS
[2025-12-16 00:55:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-16 00:55:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-16 00:55:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-16 00:55:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-16 00:55:42] 2.13.3.0 11319 14031 60724 154064 0 236 3141050 4096000 17538 130560 0 2363473457 99.999 1504913 525 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-16 00:55:42] CVMFS is ok
[2025-12-16 00:55:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-16 00:55:42] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-16 00:55:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-16 00:55:42] Further information can be found at the LHC@home message board.
[2025-12-16 00:55:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-16 00:55:42] Checking for apptainer binary...
[2025-12-16 00:55:42] apptainer is not installed, using version from CVMFS
[2025-12-16 00:55:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-16 00:55:43] 7950x-linux
[2025-12-16 00:55:43] apptainer works
[2025-12-16 00:55:43] Set ATHENA_PROC_NUMBER=12
[2025-12-16 00:55:43] Set ATHENA_CORE_NUMBER=12
[2025-12-16 00:55:43] Starting ATLAS job with PandaID=6929301852
[2025-12-16 00:55:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc569/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-16 06:42:07]  *** The last 200 lines of the pilot log: ***
[2025-12-16 06:42:07] 2025-12-16 14:41:28,697 | INFO     | monitor loop #1486: job 0:6929301852 is in state 'finished'
[2025-12-16 06:42:07] 2025-12-16 14:41:28,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 06:42:07] 2025-12-16 14:41:29,523 | INFO     | time since job start (20725s) is within the limit (174528.0s)
[2025-12-16 06:42:07] 2025-12-16 14:41:31,200 | INFO     | monitor loop #1487: job 0:6929301852 is in state 'finished'
[2025-12-16 06:42:07] 2025-12-16 14:41:31,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 06:42:07] 2025-12-16 14:41:31,528 | INFO     | time since job start (20727s) is within the limit (174528.0s)
[2025-12-16 06:42:07] 2025-12-16 14:41:33,533 | INFO     | time since job start (20729s) is within the limit (174528.0s)
[2025-12-16 06:42:07] 2025-12-16 14:41:33,702 | INFO     | monitor loop #1488: job 0:6929301852 is in state 'finished'
[2025-12-16 06:42:07] 2025-12-16 14:41:33,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,007 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-16 06:42:07] 2025-12-16 14:41:34,010 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3999.9883437500007
[2025-12-16 06:42:07] 2025-12-16 14:41:34,014 | INFO     | using path: /var/lib/multiboinc/boinc569/slots/4/PanDA_Pilot-6929301852/memory_monitor_summary.json (trf name=prmon)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,015 | INFO     | extracted standard info from prmon json
[2025-12-16 06:42:07] 2025-12-16 14:41:34,015 | INFO     | extracted standard memory fields from prmon json
[2025-12-16 06:42:07] 2025-12-16 14:41:34,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-16 06:42:07] 2025-12-16 14:41:34,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-16 06:42:07] 2025-12-16 14:41:34,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-16 06:42:07] 2025-12-16 14:41:34,018 | INFO     | fitting pss+swap vs Time
[2025-12-16 06:42:07] 2025-12-16 14:41:34,018 | INFO     | sum of square deviations: 12080189290.0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,020 | INFO     | sum of deviations: 46936289264.99999
[2025-12-16 06:42:07] 2025-12-16 14:41:34,020 | INFO     | mean x: 1765885707.0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,020 | INFO     | mean y: 2652451.1415929203
[2025-12-16 06:42:07] 2025-12-16 14:41:34,020 | INFO     | intersect: -6858508443.190802
[2025-12-16 06:42:07] 2025-12-16 14:41:34,020 | INFO     | chi2: 1.1556453578275772
[2025-12-16 06:42:07] 2025-12-16 14:41:34,021 | INFO     | sum of square deviations: 11553509647.5
[2025-12-16 06:42:07] 2025-12-16 14:41:34,022 | INFO     | sum of deviations: 45871264614.50001
[2025-12-16 06:42:07] 2025-12-16 14:41:34,022 | INFO     | mean x: 1765885554.5
[2025-12-16 06:42:07] 2025-12-16 14:41:34,022 | INFO     | mean y: 2652142.739520958
[2025-12-16 06:42:07] 2025-12-16 14:41:34,022 | INFO     | intersect: -7008499102.278088
[2025-12-16 06:42:07] 2025-12-16 14:41:34,022 | INFO     | chi2: 1.155870615796685
[2025-12-16 06:42:07] 2025-12-16 14:41:34,023 | INFO     | current chi2=1.155870615796685 (change=-0.019491963307084158 %)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,023 | INFO     | right removable region: 333
[2025-12-16 06:42:07] 2025-12-16 14:41:34,023 | INFO     | sum of square deviations: 11553509647.5
[2025-12-16 06:42:07] 2025-12-16 14:41:34,024 | INFO     | sum of deviations: 4767153385.499997
[2025-12-16 06:42:07] 2025-12-16 14:41:34,024 | INFO     | mean x: 1765885859.5
[2025-12-16 06:42:07] 2025-12-16 14:41:34,024 | INFO     | mean y: 2664555.01497006
[2025-12-16 06:42:07] 2025-12-16 14:41:34,024 | INFO     | intersect: -725966744.9418856
[2025-12-16 06:42:07] 2025-12-16 14:41:34,025 | INFO     | chi2: 0.009819297939732732
[2025-12-16 06:42:07] 2025-12-16 14:41:34,025 | INFO     | current chi2=0.009819297939732732 (change=99.15031909458872 %)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,025 | INFO     | sum of square deviations: 11042365180.0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | sum of deviations: 6855340308.000001
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | mean x: 1765886012.0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | mean y: 2663930.452887538
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | intersect: -1093636487.0811188
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | chi2: 0.008204291749918362
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | current chi2=0.008204291749918362 (change=16.44726740879733 %)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | left removable region: 20
[2025-12-16 06:42:07] 2025-12-16 14:41:34,027 | INFO     | sum of square deviations: 9508390372.0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | sum of deviations: 12503453833.000004
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | mean x: 1765886134.0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | mean y: 2661748.9904153356
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | intersect: -2319463751.4332285
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | chi2: 0.0005008715797158492
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | current memory leak: 1.31 B/s (using 313 data points, chi2=0.00)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | could have reported an average CPU frequency of 3999 MHz (15 samples)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,029 | INFO     | ..............................
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . Timing measurements:
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . get job = 0 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . initial setup = 4 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . payload setup = 8 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . stage-in = 0 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . payload execution = 20682 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . stage-out = 3 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | . log creation = 0 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,030 | INFO     | ..............................
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | 
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | job summary report
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | --------------------------------------------------
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | PanDA job id: 6929301852
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | task id: 47898763
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | errors: (none)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | pilot state: finished 
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | transexitcode: 0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,088 | INFO     | exeerrorcode: 0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | exeerrordiag: 
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | exitcode: 0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | exitmsg: OK
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | cpuconsumptiontime: 32292 s
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | nevents: 400
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | neventsw: 0
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | pid: 1379902
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | pgrp: 1379902
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | corecount: 12
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | event service: False
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | sizes: {0: 2283795, 1: 2283994, 8: 2284256, 12: 2284284, 20694: 2317841, 20695: 2317840, 20698: 2327050, 20701: 2327106, 20712: 2327300}
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | --------------------------------------------------
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | 
[2025-12-16 06:42:07] 2025-12-16 14:41:34,089 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc569/slots/4
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | job 6929301852 has completed (purged errors)
[2025-12-16 06:42:07] 2025-12-16 14:41:34,147 | INFO     | overall cleanup function is called
[2025-12-16 06:42:07] 2025-12-16 14:41:35,158 | INFO     | --- collectZombieJob: --- 10, [1379902]
[2025-12-16 06:42:07] 2025-12-16 14:41:35,158 | INFO     | zombie collector waiting for pid 1379902
[2025-12-16 06:42:07] 2025-12-16 14:41:35,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-16 06:42:07] 2025-12-16 14:41:35,158 | INFO     | collected zombie processes
[2025-12-16 06:42:07] 2025-12-16 14:41:35,158 | INFO     | will attempt to kill all subprocesses of pid=1379902
[2025-12-16 06:42:07] 2025-12-16 14:41:35,548 | INFO     | process IDs to be killed: [1379902] (in reverse order)
[2025-12-16 06:42:07] 2025-12-16 14:41:35,749 | WARNING  | found no corresponding commands to process id(s)
[2025-12-16 06:42:07] 2025-12-16 14:41:35,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-16 06:42:07] 2025-12-16 14:41:35,757 | INFO     | did not find any defunct processes belonging to 1379902
[2025-12-16 06:42:07] 2025-12-16 14:41:35,764 | INFO     | did not find any defunct processes belonging to 1379902
[2025-12-16 06:42:07] 2025-12-16 14:41:35,765 | INFO     | ready for new job
[2025-12-16 06:42:07] 2025-12-16 14:41:35,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-16 06:42:07] 2025-12-16 14:41:35,767 | INFO     | ***************************************
[2025-12-16 06:42:07] 2025-12-16 14:41:35,767 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-16 06:42:07] 2025-12-16 14:41:35,767 | INFO     | ***************************************
[2025-12-16 06:42:07] 2025-12-16 14:41:35,767 | INFO     | 
[2025-12-16 06:42:07] 2025-12-16 14:41:35,769 | INFO     | architecture information:
[2025-12-16 06:42:07] 2025-12-16 14:41:35,770 | INFO     | executing command: cat /etc/os-release
[2025-12-16 06:42:07] 2025-12-16 14:41:35,811 | INFO     | cat /etc/os-release:
[2025-12-16 06:42:07] NAME="CentOS Linux"
[2025-12-16 06:42:07] VERSION="7 (Core)"
[2025-12-16 06:42:07] ID="centos"
[2025-12-16 06:42:07] ID_LIKE="rhel fedora"
[2025-12-16 06:42:07] VERSION_ID="7"
[2025-12-16 06:42:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-16 06:42:07] ANSI_COLOR="0;31"
[2025-12-16 06:42:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-16 06:42:07] HOME_URL="https://www.centos.org/"
[2025-12-16 06:42:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-16 06:42:07] 
[2025-12-16 06:42:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-16 06:42:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-16 06:42:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-16 06:42:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-16 06:42:07] 
[2025-12-16 06:42:07] 2025-12-16 14:41:35,811 | INFO     | ***************************************
[2025-12-16 06:42:07] 2025-12-16 14:41:36,314 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc569/slots/4
[2025-12-16 06:42:07] 2025-12-16 14:41:36,367 | INFO     | sufficient remaining disk space (112614965248 B)
[2025-12-16 06:42:07] 2025-12-16 14:41:36,368 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-16 06:42:07] 2025-12-16 14:41:36,368 | INFO     | current server update state: UPDATING_FINAL
[2025-12-16 06:42:07] 2025-12-16 14:41:36,368 | INFO     | update_server=False
[2025-12-16 06:42:07] 2025-12-16 14:41:36,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-16 06:42:07] 2025-12-16 14:41:36,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-16 06:42:07] 2025-12-16 14:41:36,722 | INFO     | all data control threads have been joined
[2025-12-16 06:42:07] 2025-12-16 14:41:36,900 | INFO     | all payload control threads have been joined
[2025-12-16 06:42:07] 2025-12-16 14:41:37,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-16 06:42:07] 2025-12-16 14:41:37,210 | INFO     | aborting loop
[2025-12-16 06:42:07] 2025-12-16 14:41:37,373 | INFO     | [job] retrieve thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:37,537 | INFO     | [payload] execute_payloads thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:37,691 | INFO     | [job] validate thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:37,698 | INFO     | all job control threads have been joined
[2025-12-16 06:42:07] 2025-12-16 14:41:37,727 | INFO     | [data] control thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:37,749 | INFO     | [payload] validate_post thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:37,905 | INFO     | [payload] control thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,177 | INFO     | [payload] validate_pre thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,194 | INFO     | [job] create_data_payload thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,215 | INFO     | [job] job monitor thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,373 | INFO     | [data] copytool_out thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,543 | INFO     | [monitor] cgroup control has ended
[2025-12-16 06:42:07] 2025-12-16 14:41:38,557 | INFO     | [data] copytool_in thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,561 | INFO     | [payload] failed_post thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:38,665 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-16 06:42:07] 2025-12-16 14:41:38,703 | INFO     | [job] control thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:39,098 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-16 06:42:07] 2025-12-16 14:41:40,103 | INFO     | [job] queue monitor thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:42,670 | INFO     | [data] queue_monitor thread has finished
[2025-12-16 06:42:07] 2025-12-16 14:41:43,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377620617024)>', '<ExcThread(monitor, started 140377264723712)>']
[2025-12-16 06:42:07] 2025-12-16 14:41:48,438 | INFO     | all workflow threads have been joined
[2025-12-16 06:42:07] 2025-12-16 14:41:48,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-16 06:42:07] 2025-12-16 14:41:48,438 | INFO     | traces error code: 0
[2025-12-16 06:42:07] 2025-12-16 14:41:48,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-16 06:42:07] 2025-12-16 14:42:06,969 | INFO     | PID=1371138 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-16 06:42:07] 2025-12-16 14:42:06,969 | INFO     | .. there are 20 such processes running
[2025-12-16 06:42:07] 2025-12-16 14:42:06,970 | INFO     | found 0 job(s) in 20 queues
[2025-12-16 06:42:07] 2025-12-16 14:42:06,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-16 06:42:07] 2025-12-16 14:42:06,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-16 06:42:07] 2025-12-16 14:42:06,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-16 06:42:07] 2025-12-16 14:42:06,970 | INFO     | [monitor] control thread has ended
[2025-12-16 06:42:07] 2025-12-16 14:42:07,089 [wrapper] ==== pilot stdout END ====
[2025-12-16 06:42:07] 2025-12-16 14:42:07,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-16 06:42:07] 2025-12-16 14:42:07,092 [wrapper] pilotpid: 1371138
[2025-12-16 06:42:07] 2025-12-16 14:42:07,100 [wrapper] Pilot exit status: 0
[2025-12-16 06:42:07] 2025-12-16 14:42:07,146 [wrapper] pandaids: 6929301852
[2025-12-16 06:42:07] 2025-12-16 14:42:07,211 [wrapper] cleanup supervisor_pilot 2262582 1371139
[2025-12-16 06:42:07] 2025-12-16 14:42:07,213 [wrapper] Test setup, not cleaning
[2025-12-16 06:42:07] 2025-12-16 14:42:07,215 [wrapper] apfmon messages muted
[2025-12-16 06:42:07] 2025-12-16 14:42:07,216 [wrapper] ==== wrapper stdout END ====
[2025-12-16 06:42:07] 2025-12-16 14:42:07,218 [wrapper] ==== wrapper stderr END ====
[2025-12-16 06:42:07]  *** Error codes and diagnostics ***
[2025-12-16 06:42:07]     "exeErrorCode": 0,
[2025-12-16 06:42:07]     "exeErrorDiag": "",
[2025-12-16 06:42:07]     "pilotErrorCode": 0,
[2025-12-16 06:42:07]     "pilotErrorDiag": "",
[2025-12-16 06:42:07]  *** Listing of results directory ***
[2025-12-16 06:42:07] total 438800
[2025-12-16 06:42:07] -rw-r--r-- 1 root root    579449 Dec 13 03:35 pilot3.tar.gz
[2025-12-16 06:42:07] -rw-r--r-- 1 root root      5112 Dec 13 03:36 queuedata.json
[2025-12-16 06:42:07] -rwx------ 1 4871 1028     36322 Dec 13 03:36 runpilot2-wrapper.sh
[2025-12-16 06:42:07] -rw-r--r-- 1 root root       100 Dec 16 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-16 06:42:07] -rwxr-xr-x 1 root root      7986 Dec 16 00:55 run_atlas
[2025-12-16 06:42:07] -rw-r--r-- 1 root root       105 Dec 16 00:55 job.xml
[2025-12-16 06:42:07] -rw-r--r-- 1 root root      7075 Dec 16 00:55 init_data.xml
[2025-12-16 06:42:07] -rw-r--r-- 2 root root 221865278 Dec 16 00:55 EVNT.47898761._000234.pool.root.1
[2025-12-16 06:42:07] -rw-r--r-- 2 root root     15847 Dec 16 00:55 start_atlas.sh
[2025-12-16 06:42:07] drwxrwx--x 2 root root      4096 Dec 16 00:55 shared
[2025-12-16 06:42:07] -rw-r--r-- 2 root root    592395 Dec 16 00:55 input.tar.gz
[2025-12-16 06:42:07] -rw-r--r-- 1 root root         0 Dec 16 00:55 boinc_lockfile
[2025-12-16 06:42:07] -rw-r--r-- 1 root root      2504 Dec 16 00:55 pandaJob.out
[2025-12-16 06:42:07] -rw------- 1 root root    994528 Dec 16 00:56 agis_schedconf.cvmfs.json
[2025-12-16 06:42:07] drwxr-xr-x 5  320  320      4096 Dec 16 00:56 pilot3
[2025-12-16 06:42:07] -rw-r--r-- 1 root root       530 Dec 16 06:40 boinc_task_state.xml
[2025-12-16 06:42:07] -rw------- 1 root root 216509298 Dec 16 06:40 HITS.47898763._003964.pool.root.1
[2025-12-16 06:42:07] -rw------- 1 root root      1034 Dec 16 06:41 memory_monitor_summary.json
[2025-12-16 06:42:07] -rw------- 1 root root   1516240 Dec 16 06:41 agis_ddmendpoints.agis.ALL.json
[2025-12-16 06:42:07] -rw------- 1 root root    613479 Dec 16 06:41 log.47898763._003964.job.log.tgz.1
[2025-12-16 06:42:07] -rw------- 1 root root      7766 Dec 16 06:41 heartbeat.json
[2025-12-16 06:42:07] -rw-r--r-- 1 root root        28 Dec 16 06:42 wrapper_checkpoint.txt
[2025-12-16 06:42:07] -rw-r--r-- 1 root root      8192 Dec 16 06:42 boinc_mmap_file
[2025-12-16 06:42:07] -rw------- 1 root root       823 Dec 16 06:42 pilotlog.txt
[2025-12-16 06:42:07] -rw------- 1 root root        95 Dec 16 06:42 pilot_heartbeat.json
[2025-12-16 06:42:07] -rw------- 1 root root   2907193 Dec 16 06:42 log.47898763._003964.job.log.1
[2025-12-16 06:42:07] -rw------- 1 root root       357 Dec 16 06:42 output.list
[2025-12-16 06:42:07] -rw-r--r-- 1 root root       620 Dec 16 06:42 runtime_log
[2025-12-16 06:42:07] -rw------- 1 root root   3543040 Dec 16 06:42 result.tar.gz
[2025-12-16 06:42:07] -rw-r--r-- 1 root root      9021 Dec 16 06:42 runtime_log.err
[2025-12-16 06:42:07] -rw------- 1 root root       658 Dec 16 06:42 A3BLDmr6co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiFTKDmnFNCYn.diag
[2025-12-16 06:42:07] -rw-r--r-- 1 root root     21530 Dec 16 06:42 stderr.txt
[2025-12-16 06:42:07] HITS file was successfully produced:
[2025-12-16 06:42:07] -rw------- 1 root root 216509298 Dec 16 06:40 shared/HITS.pool.root.1
[2025-12-16 06:42:07]  *** Contents of shared directory: ***
[2025-12-16 06:42:07] total 432168
[2025-12-16 06:42:07] -rw-r--r-- 2 root root 221865278 Dec 16 00:55 ATLAS.root_0
[2025-12-16 06:42:07] -rw-r--r-- 2 root root     15847 Dec 16 00:55 start_atlas.sh
[2025-12-16 06:42:07] -rw-r--r-- 2 root root    592395 Dec 16 00:55 input.tar.gz
[2025-12-16 06:42:07] -rw------- 1 root root 216509298 Dec 16 06:40 HITS.pool.root.1
[2025-12-16 06:42:07] -rw------- 1 root root   3543040 Dec 16 06:42 result.tar.gz
06:42:09 (1365164): run_atlas exited; CPU time 32675.557509
06:42:09 (1365164): called boinc_finish(0)

</stderr_txt>
]]>

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