Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:33:44 (8178): wrapper (7.7.26015): starting
17:33:44 (8178): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 17:33:44] Arguments: --nthreads 12
[2025-12-13 17:33:44] Threads: 12
[2025-12-13 17:33:44] Checking for CVMFS
[2025-12-13 17:33:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 17:33:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 17:33:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 17:33:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 17:33:45] 2.11.2.0 2925 312767 96556 153975 2 56 16075547 20275201 1 130560 1 138323733 99.966 18176091 15171 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 17:33:45] CVMFS is ok
[2025-12-13 17:33:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 17:33:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 17:33:45] Further information can be found at the LHC@home message board.
[2025-12-13 17:33:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 17:33:45] Checking for apptainer binary...
[2025-12-13 17:33:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 17:33:45] Running /usr/bin/apptainer --version
[2025-12-13 17:33:45] apptainer version 1.3.2-1.el7
[2025-12-13 17:33:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 17:33:46] c-205-9.aglt2.org
[2025-12-13 17:33:46] apptainer works
[2025-12-13 17:33:46] Set ATHENA_PROC_NUMBER=12
[2025-12-13 17:33:46] Set ATHENA_CORE_NUMBER=12
[2025-12-13 17:33:46] Starting ATLAS job with PandaID=6929288925
[2025-12-13 17:33:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 19:13:26]  *** The last 200 lines of the pilot log: ***
[2025-12-13 19:13:26]  status_code=0
[2025-12-13 19:13:26]  storage_token=
[2025-12-13 19:13:26]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929288925/log.47898782._002777.job.log.tgz.1
[2025-12-13 19:13:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/8e/log.47898782._002777.job.log.tgz.1
[2025-12-13 19:13:26]  workdir=None
[2025-12-13 19:13:26] ]
[2025-12-13 19:13:26] 2025-12-14 00:12:44,606 | INFO     | transferring file log.47898782._002777.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929288925/log.47898782._002777.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 19:13:26] 2025-12-14 00:12:44,606 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929288925/log.47898782._002777.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898782._002777.job
[2025-12-13 19:13:26] 2025-12-14 00:12:44,630 | INFO     | adding to output.list: log.47898782._002777.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/8e/log.47898782._002777.job.log.tg
[2025-12-13 19:13:26] 2025-12-14 00:12:44,631 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 19:13:26] 2025-12-14 00:12:44,632 | INFO     | summary of transferred files:
[2025-12-13 19:13:26] 2025-12-14 00:12:44,632 | INFO     |  -- lfn=log.47898782._002777.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 19:13:26] 2025-12-14 00:12:44,632 | INFO     | stage-out finished correctly
[2025-12-13 19:13:26] 2025-12-14 00:12:44,848 | INFO     | time since job start (5923s) is within the limit (174528.0s)
[2025-12-13 19:13:26] 2025-12-14 00:12:45,387 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 19:13:26] 2025-12-14 00:12:46,190 | INFO     | monitor loop #438: job 0:6929288925 is in state 'finished'
[2025-12-13 19:13:26] 2025-12-14 00:12:46,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 19:13:26] 2025-12-14 00:12:46,852 | INFO     | time since job start (5925s) is within the limit (174528.0s)
[2025-12-13 19:13:26] 2025-12-14 00:12:48,237 | INFO     | job 6929288925 has state=finished
[2025-12-13 19:13:26] 2025-12-14 00:12:48,237 | INFO     | preparing for final server update for job 6929288925 in state='finished'
[2025-12-13 19:13:26] 2025-12-14 00:12:48,238 | INFO     | this job has now completed (state=finished)
[2025-12-13 19:13:26] 2025-12-14 00:12:48,238 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 19:13:26] 2025-12-14 00:12:48,238 | INFO     | log transfer has been attempted: DONE
[2025-12-13 19:13:26] 2025-12-14 00:12:48,239 | INFO     | job 6929288925 has finished - writing final server update
[2025-12-13 19:13:26] 2025-12-14 00:12:48,239 | INFO     | total number of processed events: 400 (read)
[2025-12-13 19:13:26] 2025-12-14 00:12:48,240 | INFO     | executing command: lscpu
[2025-12-13 19:13:26] 2025-12-14 00:12:48,266 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 19:13:26] 2025-12-14 00:12:48,693 | INFO     | monitor loop #439: job 0:6929288925 is in state 'finished'
[2025-12-13 19:13:26] 2025-12-14 00:12:48,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 19:13:26] 2025-12-14 00:12:48,858 | INFO     | time since job start (5927s) is within the limit (174528.0s)
[2025-12-13 19:13:26] 2025-12-14 00:12:50,863 | INFO     | time since job start (5929s) is within the limit (174528.0s)
[2025-12-13 19:13:26] 2025-12-14 00:12:51,196 | INFO     | monitor loop #440: job 0:6929288925 is in state 'finished'
[2025-12-13 19:13:26] 2025-12-14 00:12:51,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 19:13:26] 2025-12-14 00:12:52,868 | INFO     | time since job start (5931s) is within the limit (174528.0s)
[2025-12-13 19:13:26] 2025-12-14 00:12:53,699 | INFO     | monitor loop #441: job 0:6929288925 is in state 'finished'
[2025-12-13 19:13:26] 2025-12-14 00:12:53,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 19:13:26] 2025-12-14 00:12:53,992 | INFO     | PID=11858 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 19:13:26] 2025-12-14 00:12:54,231 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 19:13:26] 2025-12-14 00:12:54,235 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-13 19:13:26] 2025-12-14 00:12:54,238 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929288925/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 19:13:26] 2025-12-14 00:12:54,239 | INFO     | extracted standard info from prmon json
[2025-12-13 19:13:26] 2025-12-14 00:12:54,239 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 19:13:26] 2025-12-14 00:12:54,239 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 19:13:26] 2025-12-14 00:12:54,239 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 19:13:26] 2025-12-14 00:12:54,239 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 19:13:26] 2025-12-14 00:12:54,241 | INFO     | fitting pss+swap vs Time
[2025-12-13 19:13:26] 2025-12-14 00:12:54,241 | INFO     | sum of square deviations: 226022842.5
[2025-12-13 19:13:26] 2025-12-14 00:12:54,242 | INFO     | sum of deviations: -10065935191.0
[2025-12-13 19:13:26] 2025-12-14 00:12:54,242 | INFO     | mean x: 1765668289.5
[2025-12-13 19:13:26] 2025-12-14 00:12:54,242 | INFO     | mean y: 2752780.6222222224
[2025-12-13 19:13:26] 2025-12-14 00:12:54,242 | INFO     | intersect: 78636851769.58095
[2025-12-13 19:13:26] 2025-12-14 00:12:54,242 | INFO     | chi2: 0.10135884342398871
[2025-12-13 19:13:26] 2025-12-14 00:12:54,242 | INFO     | current memory leak: -44.54 B/s (using 90 data points, chi2=0.10)
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | could have reported an average CPU frequency of 2128 MHz (7 samples)
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | ..............................
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | . Timing measurements:
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | . get job = 0 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | . initial setup = 2 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | . payload setup = 7 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | . stage-in = 0 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,243 | INFO     | . payload execution = 5895 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,244 | INFO     | . stage-out = 0 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,244 | INFO     | . log creation = 0 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,244 | INFO     | ..............................
[2025-12-13 19:13:26] 2025-12-14 00:12:54,323 | INFO     | 
[2025-12-13 19:13:26] 2025-12-14 00:12:54,324 | INFO     | job summary report
[2025-12-13 19:13:26] 2025-12-14 00:12:54,324 | INFO     | --------------------------------------------------
[2025-12-13 19:13:26] 2025-12-14 00:12:54,324 | INFO     | PanDA job id: 6929288925
[2025-12-13 19:13:26] 2025-12-14 00:12:54,324 | INFO     | task id: 47898782
[2025-12-13 19:13:26] 2025-12-14 00:12:54,324 | INFO     | errors: (none)
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | pilot state: finished 
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | transexitcode: 0
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | exeerrorcode: 0
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | exeerrordiag: 
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | exitcode: 0
[2025-12-13 19:13:26] 2025-12-14 00:12:54,325 | INFO     | exitmsg: OK
[2025-12-13 19:13:26] 2025-12-14 00:12:54,326 | INFO     | cpuconsumptiontime: 64722 s
[2025-12-13 19:13:26] 2025-12-14 00:12:54,326 | INFO     | nevents: 400
[2025-12-13 19:13:26] 2025-12-14 00:12:54,326 | INFO     | neventsw: 0
[2025-12-13 19:13:26] 2025-12-14 00:12:54,326 | INFO     | pid: 18293
[2025-12-13 19:13:26] 2025-12-14 00:12:54,326 | INFO     | pgrp: 18293
[2025-12-13 19:13:26] 2025-12-14 00:12:54,326 | INFO     | corecount: 12
[2025-12-13 19:13:26] 2025-12-14 00:12:54,327 | INFO     | event service: False
[2025-12-13 19:13:26] 2025-12-14 00:12:54,327 | INFO     | sizes: {0: 2283981, 5: 2284243, 11: 2284299, 5906: 2310996, 5907: 2319994, 5908: 2320050, 5916: 2320372}
[2025-12-13 19:13:26] 2025-12-14 00:12:54,327 | INFO     | --------------------------------------------------
[2025-12-13 19:13:26] 2025-12-14 00:12:54,327 | INFO     | 
[2025-12-13 19:13:26] 2025-12-14 00:12:54,327 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 19:13:26] 2025-12-14 00:12:54,352 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,352 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,352 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,352 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,355 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,355 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 19:13:26] 2025-12-14 00:12:54,355 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,355 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 19:13:26] 2025-12-14 00:12:54,355 | INFO     | job 6929288925 has completed (purged errors)
[2025-12-13 19:13:26] 2025-12-14 00:12:54,356 | INFO     | overall cleanup function is called
[2025-12-13 19:13:26] 2025-12-14 00:12:55,364 | INFO     | --- collectZombieJob: --- 10, [18293]
[2025-12-13 19:13:26] 2025-12-14 00:12:55,364 | INFO     | zombie collector waiting for pid 18293
[2025-12-13 19:13:26] 2025-12-14 00:12:55,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 19:13:26] 2025-12-14 00:12:55,365 | INFO     | collected zombie processes
[2025-12-13 19:13:26] 2025-12-14 00:12:55,365 | INFO     | will attempt to kill all subprocesses of pid=18293
[2025-12-13 19:13:26] 2025-12-14 00:12:55,456 | INFO     | process IDs to be killed: [18293] (in reverse order)
[2025-12-13 19:13:26] 2025-12-14 00:12:55,509 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 19:13:26] 2025-12-14 00:12:55,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 19:13:26] 2025-12-14 00:12:55,513 | INFO     | did not find any defunct processes belonging to 18293
[2025-12-13 19:13:26] 2025-12-14 00:12:55,517 | INFO     | did not find any defunct processes belonging to 18293
[2025-12-13 19:13:26] 2025-12-14 00:12:55,517 | INFO     | ready for new job
[2025-12-13 19:13:26] 2025-12-14 00:12:55,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 19:13:26] 2025-12-14 00:12:55,519 | INFO     | ***************************************
[2025-12-13 19:13:26] 2025-12-14 00:12:55,519 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 19:13:26] 2025-12-14 00:12:55,519 | INFO     | ***************************************
[2025-12-13 19:13:26] 2025-12-14 00:12:55,519 | INFO     | 
[2025-12-13 19:13:26] 2025-12-14 00:12:55,520 | INFO     | architecture information:
[2025-12-13 19:13:26] 2025-12-14 00:12:55,520 | INFO     | executing command: cat /etc/os-release
[2025-12-13 19:13:26] 2025-12-14 00:12:55,536 | INFO     | cat /etc/os-release:
[2025-12-13 19:13:26] NAME="CentOS Linux"
[2025-12-13 19:13:26] VERSION="7 (Core)"
[2025-12-13 19:13:26] ID="centos"
[2025-12-13 19:13:26] ID_LIKE="rhel fedora"
[2025-12-13 19:13:26] VERSION_ID="7"
[2025-12-13 19:13:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 19:13:26] ANSI_COLOR="0;31"
[2025-12-13 19:13:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 19:13:26] HOME_URL="https://www.centos.org/"
[2025-12-13 19:13:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 19:13:26] 
[2025-12-13 19:13:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 19:13:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 19:13:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 19:13:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 19:13:26] 
[2025-12-13 19:13:26] 2025-12-14 00:12:55,536 | INFO     | ***************************************
[2025-12-13 19:13:26] 2025-12-14 00:12:56,039 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 19:13:26] 2025-12-14 00:12:56,056 | INFO     | sufficient remaining disk space (29362225152 B)
[2025-12-13 19:13:26] 2025-12-14 00:12:56,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 19:13:26] 2025-12-14 00:12:56,057 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 19:13:26] 2025-12-14 00:12:56,057 | INFO     | update_server=False
[2025-12-13 19:13:26] 2025-12-14 00:12:56,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 19:13:26] 2025-12-14 00:12:56,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 19:13:26] 2025-12-14 00:12:56,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 19:13:26] 2025-12-14 00:12:56,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 19:13:26] 2025-12-14 00:12:56,203 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 19:13:26] 2025-12-14 00:12:56,203 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 19:13:26] 2025-12-14 00:12:56,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 19:13:26] 2025-12-14 00:12:56,203 | INFO     | will abort loop
[2025-12-13 19:13:26] 2025-12-14 00:12:56,221 | INFO     | all data control threads have been joined
[2025-12-13 19:13:26] 2025-12-14 00:12:57,062 | INFO     | [job] retrieve thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:57,064 | INFO     | [job] queue monitor thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:57,116 | INFO     | all payload control threads have been joined
[2025-12-13 19:13:26] 2025-12-14 00:12:57,208 | INFO     | [job] job monitor thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:57,227 | INFO     | [data] control thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:57,295 | INFO     | [data] copytool_in thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:57,338 | INFO     | [payload] validate_post thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:57,633 | INFO     | all job control threads have been joined
[2025-12-13 19:13:26] 2025-12-14 00:12:57,963 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,063 | INFO     | [data] copytool_out thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,093 | INFO     | [job] validate thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,122 | INFO     | [payload] control thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,128 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,131 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,162 | INFO     | [payload] failed_post thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:12:58,638 | INFO     | [job] control thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:13:00,064 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 19:13:26] 2025-12-14 00:13:10,500 | INFO     | [monitor] cgroup control has ended
[2025-12-13 19:13:26] 2025-12-14 00:13:10,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260570511168)>', '<ExcThread(monitor, started 140259983607552)>']
[2025-12-13 19:13:26] 2025-12-14 00:13:15,921 | INFO     | all workflow threads have been joined
[2025-12-13 19:13:26] 2025-12-14 00:13:15,921 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 19:13:26] 2025-12-14 00:13:15,922 | INFO     | traces error code: 0
[2025-12-13 19:13:26] 2025-12-14 00:13:15,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 19:13:26] 2025-12-14 00:13:26,187 | INFO     | PID=11858 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 19:13:26] 2025-12-14 00:13:26,188 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 19:13:26] 2025-12-14 00:13:26,188 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 19:13:26] 2025-12-14 00:13:26,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 19:13:26] 2025-12-14 00:13:26,189 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 19:13:26] 2025-12-14 00:13:26,189 | INFO     | [monitor] control thread has ended
[2025-12-13 19:13:26] 2025-12-14 00:13:26,287 [wrapper] ==== pilot stdout END ====
[2025-12-13 19:13:26] 2025-12-14 00:13:26,291 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 19:13:26] 2025-12-14 00:13:26,295 [wrapper] pilotpid: 11858
[2025-12-13 19:13:26] 2025-12-14 00:13:26,299 [wrapper] Pilot exit status: 0
[2025-12-13 19:13:26] 2025-12-14 00:13:26,316 [wrapper] pandaids: 6929288925
[2025-12-13 19:13:26] 2025-12-14 00:13:26,358 [wrapper] cleanup supervisor_pilot 17484 11859
[2025-12-13 19:13:26] 2025-12-14 00:13:26,362 [wrapper] Test setup, not cleaning
[2025-12-13 19:13:26] 2025-12-14 00:13:26,365 [wrapper] apfmon messages muted
[2025-12-13 19:13:26] 2025-12-14 00:13:26,369 [wrapper] ==== wrapper stdout END ====
[2025-12-13 19:13:26] 2025-12-14 00:13:26,373 [wrapper] ==== wrapper stderr END ====
[2025-12-13 19:13:26]  *** Error codes and diagnostics ***
[2025-12-13 19:13:26]     "exeErrorCode": 0,
[2025-12-13 19:13:26]     "exeErrorDiag": "",
[2025-12-13 19:13:26]     "pilotErrorCode": 0,
[2025-12-13 19:13:26]     "pilotErrorDiag": "",
[2025-12-13 19:13:26]  *** Listing of results directory ***
[2025-12-13 19:13:26] total 408244
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-13 19:13:26] -rwx------ 1 boincer umatlas     36322 Dec 13 05:06 runpilot2-wrapper.sh
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 05:11 queuedata.json
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas       100 Dec 13 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 19:13:26] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 17:33 run_atlas
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas       105 Dec 13 17:33 job.xml
[2025-12-13 19:13:26] -rw-r--r-- 2 boincer umatlas 212760883 Dec 13 17:33 EVNT.47898779._000118.pool.root.1
[2025-12-13 19:13:26] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 17:33 start_atlas.sh
[2025-12-13 19:13:26] drwxrwx--x 2 boincer umatlas      4096 Dec 13 17:33 shared
[2025-12-13 19:13:26] -rw-r--r-- 2 boincer umatlas    592397 Dec 13 17:33 input.tar.gz
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas         0 Dec 13 17:33 boinc_lockfile
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas      2523 Dec 13 17:33 pandaJob.out
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas        57 Dec 13 17:33 setup.sh.local
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas    991728 Dec 13 17:33 agis_schedconf.cvmfs.json
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas   1516240 Dec 13 17:34 agis_ddmendpoints.agis.ALL.json
[2025-12-13 19:13:26] drwx------ 5 boincer umatlas      4096 Dec 13 17:34 pilot3
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 19:10 init_data.xml
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas 198847125 Dec 13 19:12 HITS.47898782._002777.pool.root.1
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas       529 Dec 13 19:12 boinc_task_state.xml
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas      1045 Dec 13 19:12 memory_monitor_summary.json
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas    417427 Dec 13 19:12 log.47898782._002777.job.log.tgz.1
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas      7846 Dec 13 19:12 heartbeat.json
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 19:13 boinc_mmap_file
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas        27 Dec 13 19:13 wrapper_checkpoint.txt
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas        95 Dec 13 19:13 pilot_heartbeat.json
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas       745 Dec 13 19:13 pilotlog.txt
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas    843602 Dec 13 19:13 log.47898782._002777.job.log.1
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas       357 Dec 13 19:13 output.list
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas       620 Dec 13 19:13 runtime_log
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas   1280000 Dec 13 19:13 result.tar.gz
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 19:13 runtime_log.err
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas       658 Dec 13 19:13 d17MDm4gbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm55SKDmKiqa9m.diag
[2025-12-13 19:13:26] -rw-r--r-- 1 boincer umatlas     22242 Dec 13 19:13 stderr.txt
[2025-12-13 19:13:26] HITS file was successfully produced:
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas 198847125 Dec 13 19:12 shared/HITS.pool.root.1
[2025-12-13 19:13:26]  *** Contents of shared directory: ***
[2025-12-13 19:13:26] total 403816
[2025-12-13 19:13:26] -rw-r--r-- 2 boincer umatlas 212760883 Dec 13 17:33 ATLAS.root_0
[2025-12-13 19:13:26] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 17:33 start_atlas.sh
[2025-12-13 19:13:26] -rw-r--r-- 2 boincer umatlas    592397 Dec 13 17:33 input.tar.gz
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas 198847125 Dec 13 19:12 HITS.pool.root.1
[2025-12-13 19:13:26] -rw------- 1 boincer umatlas   1280000 Dec 13 19:13 result.tar.gz
19:13:27 (8178): run_atlas exited; CPU time 64706.035996
19:13:27 (8178): called boinc_finish(0)

</stderr_txt>
]]>

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