Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:56:17 (19246): wrapper (7.7.26015): starting
16:56:17 (19246): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 16:56:17] Arguments: --nthreads 8
[2025-12-13 16:56:17] Threads: 8
[2025-12-13 16:56:17] Checking for CVMFS
[2025-12-13 16:56:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:56:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:56:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:56:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:56:17] 2.11.2.0 26356 132629 141180 153973 2 59 9960426 18432000 1833 130560 0 97042436 99.976 5568250 23509 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 16:56:17] CVMFS is ok
[2025-12-13 16:56:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:56:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:56:17] Further information can be found at the LHC@home message board.
[2025-12-13 16:56:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:56:17] Checking for apptainer binary...
[2025-12-13 16:56:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:56:17] Running /usr/bin/apptainer --version
[2025-12-13 16:56:18] apptainer version 1.3.2-1.el7
[2025-12-13 16:56:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:56:18] c-206-6.aglt2.org
[2025-12-13 16:56:18] apptainer works
[2025-12-13 16:56:18] Set ATHENA_PROC_NUMBER=8
[2025-12-13 16:56:18] Set ATHENA_CORE_NUMBER=8
[2025-12-13 16:56:18] Starting ATLAS job with PandaID=6929334741
[2025-12-13 16:56:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 21:23:12]  *** The last 200 lines of the pilot log: ***
[2025-12-13 21:23:12] 2025-12-14 02:22:39,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 21:23:12] 2025-12-14 02:22:39,471 | INFO     | time since job start (15970s) is within the limit (174528.0s)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,328 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 21:23:12] 2025-12-14 02:22:41,332 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2350.375
[2025-12-13 21:23:12] 2025-12-14 02:22:41,335 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929334741/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,335 | INFO     | extracted standard info from prmon json
[2025-12-13 21:23:12] 2025-12-14 02:22:41,336 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 21:23:12] 2025-12-14 02:22:41,336 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 21:23:12] 2025-12-14 02:22:41,336 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 21:23:12] 2025-12-14 02:22:41,336 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 21:23:12] 2025-12-14 02:22:41,340 | INFO     | fitting pss+swap vs Time
[2025-12-13 21:23:12] 2025-12-14 02:22:41,340 | INFO     | sum of square deviations: 5576683165.5
[2025-12-13 21:23:12] 2025-12-14 02:22:41,342 | INFO     | sum of deviations: 13305537190.500004
[2025-12-13 21:23:12] 2025-12-14 02:22:41,342 | INFO     | mean x: 1765670974.5
[2025-12-13 21:23:12] 2025-12-14 02:22:41,342 | INFO     | mean y: 2473901.973282443
[2025-12-13 21:23:12] 2025-12-14 02:22:41,342 | INFO     | intersect: -4210281264.5271544
[2025-12-13 21:23:12] 2025-12-14 02:22:41,343 | INFO     | chi2: 2.1797363315855014
[2025-12-13 21:23:12] 2025-12-14 02:22:41,343 | INFO     | sum of square deviations: 5263458688.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,345 | INFO     | sum of deviations: 29914429524.00001
[2025-12-13 21:23:12] 2025-12-14 02:22:41,345 | INFO     | mean x: 1765670822.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,345 | INFO     | mean y: 2481857.7782101166
[2025-12-13 21:23:12] 2025-12-14 02:22:41,345 | INFO     | intersect: -10032561352.06453
[2025-12-13 21:23:12] 2025-12-14 02:22:41,345 | INFO     | chi2: 1.4080532007169515
[2025-12-13 21:23:12] 2025-12-14 02:22:41,345 | INFO     | current chi2=1.4080532007169515 (change=35.40259065679019 %)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,346 | INFO     | sum of square deviations: 4962187923.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,347 | INFO     | sum of deviations: 28944999864.500008
[2025-12-13 21:23:12] 2025-12-14 02:22:41,347 | INFO     | mean x: 1765670669.5
[2025-12-13 21:23:12] 2025-12-14 02:22:41,347 | INFO     | mean y: 2481367.4007936507
[2025-12-13 21:23:12] 2025-12-14 02:22:41,348 | INFO     | intersect: -10296874094.84278
[2025-12-13 21:23:12] 2025-12-14 02:22:41,348 | INFO     | chi2: 1.4085761880415624
[2025-12-13 21:23:12] 2025-12-14 02:22:41,348 | INFO     | current chi2=1.4085761880415624 (change=-0.037142582705296516 %)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,348 | INFO     | right removable region: 251
[2025-12-13 21:23:12] 2025-12-14 02:22:41,348 | INFO     | sum of square deviations: 5263458688.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,350 | INFO     | sum of deviations: -23215432643.000004
[2025-12-13 21:23:12] 2025-12-14 02:22:41,350 | INFO     | mean x: 1765671127.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,350 | INFO     | mean y: 2491516.7392996107
[2025-12-13 21:23:12] 2025-12-14 02:22:41,350 | INFO     | intersect: 7790302070.285037
[2025-12-13 21:23:12] 2025-12-14 02:22:41,351 | INFO     | chi2: 0.8775075428990317
[2025-12-13 21:23:12] 2025-12-14 02:22:41,351 | INFO     | current chi2=0.8775075428990317 (change=59.74249131954652 %)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,351 | INFO     | sum of square deviations: 4962187923.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | sum of deviations: -24359376074.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | mean x: 1765671279.5
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | mean y: 2492079.3174603176
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | intersect: 8670170810.516788
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | chi2: 0.8668419949867701
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | current chi2=0.8668419949867701 (change=1.2154366077613084 %)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,353 | INFO     | left removable region: 20
[2025-12-13 21:23:12] 2025-12-14 02:22:41,354 | INFO     | sum of square deviations: 3822136780.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,355 | INFO     | sum of deviations: 7015365023.999997
[2025-12-13 21:23:12] 2025-12-14 02:22:41,355 | INFO     | mean x: 1765671249.0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,355 | INFO     | mean y: 2491845.393939394
[2025-12-13 21:23:12] 2025-12-14 02:22:41,355 | INFO     | intersect: -3238320568.4718432
[2025-12-13 21:23:12] 2025-12-14 02:22:41,356 | INFO     | chi2: 0.0009592749034996341
[2025-12-13 21:23:12] 2025-12-14 02:22:41,356 | INFO     | current memory leak: 1.84 B/s (using 231 data points, chi2=0.00)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,356 | INFO     | could have reported an average CPU frequency of 2563 MHz (12 samples)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,356 | INFO     | ..............................
[2025-12-13 21:23:12] 2025-12-14 02:22:41,356 | INFO     | . Timing measurements:
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . get job = 0 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . initial setup = 2 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . payload setup = 4 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . stage-in = 0 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . payload execution = 15937 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . stage-out = 2 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | . log creation = 0 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,357 | INFO     | ..............................
[2025-12-13 21:23:12] 2025-12-14 02:22:41,451 | INFO     | 
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | job summary report
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | --------------------------------------------------
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | PanDA job id: 6929334741
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | task id: 47898763
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | errors: (none)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | pilot state: finished 
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | transexitcode: 0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | exeerrorcode: 0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,452 | INFO     | exeerrordiag: 
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | exitcode: 0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | exitmsg: OK
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | cpuconsumptiontime: 120767 s
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | nevents: 400
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | neventsw: 0
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | pid: 29385
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | pgrp: 29385
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | corecount: 8
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | event service: False
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | sizes: {0: 2283781, 1: 2283980, 4: 2284242, 11: 2284270, 15945: 2315619, 15949: 2324801, 15957: 2324939}
[2025-12-13 21:23:12] 2025-12-14 02:22:41,453 | INFO     | --------------------------------------------------
[2025-12-13 21:23:12] 2025-12-14 02:22:41,454 | INFO     | 
[2025-12-13 21:23:12] 2025-12-14 02:22:41,454 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,476 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 21:23:12] 2025-12-14 02:22:41,476 | INFO     | job 6929334741 has completed (purged errors)
[2025-12-13 21:23:12] 2025-12-14 02:22:41,476 | INFO     | overall cleanup function is called
[2025-12-13 21:23:12] 2025-12-14 02:22:42,483 | INFO     | --- collectZombieJob: --- 10, [29385]
[2025-12-13 21:23:12] 2025-12-14 02:22:42,483 | INFO     | zombie collector waiting for pid 29385
[2025-12-13 21:23:12] 2025-12-14 02:22:42,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 21:23:12] 2025-12-14 02:22:42,484 | INFO     | collected zombie processes
[2025-12-13 21:23:12] 2025-12-14 02:22:42,484 | INFO     | will attempt to kill all subprocesses of pid=29385
[2025-12-13 21:23:12] 2025-12-14 02:22:42,638 | INFO     | process IDs to be killed: [29385] (in reverse order)
[2025-12-13 21:23:12] 2025-12-14 02:22:42,694 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 21:23:12] 2025-12-14 02:22:42,695 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 21:23:12] 2025-12-14 02:22:42,697 | INFO     | did not find any defunct processes belonging to 29385
[2025-12-13 21:23:12] 2025-12-14 02:22:42,700 | INFO     | did not find any defunct processes belonging to 29385
[2025-12-13 21:23:12] 2025-12-14 02:22:42,700 | INFO     | ready for new job
[2025-12-13 21:23:12] 2025-12-14 02:22:42,700 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 21:23:12] 2025-12-14 02:22:42,701 | INFO     | ***************************************
[2025-12-13 21:23:12] 2025-12-14 02:22:42,702 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 21:23:12] 2025-12-14 02:22:42,702 | INFO     | ***************************************
[2025-12-13 21:23:12] 2025-12-14 02:22:42,702 | INFO     | 
[2025-12-13 21:23:12] 2025-12-14 02:22:42,703 | INFO     | architecture information:
[2025-12-13 21:23:12] 2025-12-14 02:22:42,703 | INFO     | executing command: cat /etc/os-release
[2025-12-13 21:23:12] 2025-12-14 02:22:42,715 | INFO     | cat /etc/os-release:
[2025-12-13 21:23:12] NAME="CentOS Linux"
[2025-12-13 21:23:12] VERSION="7 (Core)"
[2025-12-13 21:23:12] ID="centos"
[2025-12-13 21:23:12] ID_LIKE="rhel fedora"
[2025-12-13 21:23:12] VERSION_ID="7"
[2025-12-13 21:23:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 21:23:12] ANSI_COLOR="0;31"
[2025-12-13 21:23:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 21:23:12] HOME_URL="https://www.centos.org/"
[2025-12-13 21:23:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 21:23:12] 
[2025-12-13 21:23:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 21:23:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 21:23:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 21:23:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 21:23:12] 
[2025-12-13 21:23:12] 2025-12-14 02:22:42,716 | INFO     | ***************************************
[2025-12-13 21:23:12] 2025-12-14 02:22:43,219 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-13 21:23:12] 2025-12-14 02:22:43,234 | INFO     | sufficient remaining disk space (27946647552 B)
[2025-12-13 21:23:12] 2025-12-14 02:22:43,235 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 21:23:12] 2025-12-14 02:22:43,235 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 21:23:12] 2025-12-14 02:22:43,235 | INFO     | update_server=False
[2025-12-13 21:23:12] 2025-12-14 02:22:43,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 21:23:12] 2025-12-14 02:22:43,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 21:23:12] 2025-12-14 02:22:43,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 21:23:12] 2025-12-14 02:22:43,239 | INFO     | aborting loop
[2025-12-13 21:23:12] 2025-12-14 02:22:43,271 | INFO     | all job control threads have been joined
[2025-12-13 21:23:12] 2025-12-14 02:22:44,068 | INFO     | all data control threads have been joined
[2025-12-13 21:23:12] 2025-12-14 02:22:44,239 | INFO     | [job] queue monitor thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,241 | INFO     | [job] validate thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,241 | INFO     | [job] retrieve thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,244 | INFO     | [job] job monitor thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,276 | INFO     | [job] control thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,281 | INFO     | all payload control threads have been joined
[2025-12-13 21:23:12] 2025-12-14 02:22:44,532 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,598 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:44,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 21:23:12] 2025-12-14 02:22:44,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 21:23:12] 2025-12-14 02:22:44,956 | INFO     | [data] copytool_in thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:45,073 | INFO     | [data] control thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:45,141 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:45,286 | INFO     | [payload] control thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:45,389 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:45,604 | INFO     | [payload] validate_post thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:45,604 | INFO     | [payload] failed_post thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:46,647 | INFO     | [data] copytool_out thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:48,747 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 21:23:12] 2025-12-14 02:22:55,299 | INFO     | [monitor] cgroup control has ended
[2025-12-13 21:23:12] 2025-12-14 02:22:57,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140631131842368)>', '<ExcThread(monitor, started 140630684579584)>']
[2025-12-13 21:23:12] 2025-12-14 02:23:02,238 | INFO     | all workflow threads have been joined
[2025-12-13 21:23:12] 2025-12-14 02:23:02,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 21:23:12] 2025-12-14 02:23:02,244 | INFO     | traces error code: 0
[2025-12-13 21:23:12] 2025-12-14 02:23:02,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 21:23:12] 2025-12-14 02:23:12,666 | INFO     | PID=22932 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 21:23:12] 2025-12-14 02:23:12,667 | INFO     | .. there are 3 such processes running
[2025-12-13 21:23:12] 2025-12-14 02:23:12,667 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 21:23:12] 2025-12-14 02:23:12,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 21:23:12] 2025-12-14 02:23:12,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 21:23:12] 2025-12-14 02:23:12,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 21:23:12] 2025-12-14 02:23:12,668 | INFO     | [monitor] control thread has ended
[2025-12-13 21:23:12] 2025-12-14 02:23:12,786 [wrapper] ==== pilot stdout END ====
[2025-12-13 21:23:12] 2025-12-14 02:23:12,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 21:23:12] 2025-12-14 02:23:12,791 [wrapper] pilotpid: 22932
[2025-12-13 21:23:12] 2025-12-14 02:23:12,794 [wrapper] Pilot exit status: 0
[2025-12-13 21:23:12] 2025-12-14 02:23:12,804 [wrapper] pandaids: 6929334741
[2025-12-13 21:23:12] 2025-12-14 02:23:12,845 [wrapper] cleanup supervisor_pilot 29893 22933
[2025-12-13 21:23:12] 2025-12-14 02:23:12,847 [wrapper] Test setup, not cleaning
[2025-12-13 21:23:12] 2025-12-14 02:23:12,850 [wrapper] apfmon messages muted
[2025-12-13 21:23:12] 2025-12-14 02:23:12,852 [wrapper] ==== wrapper stdout END ====
[2025-12-13 21:23:12] 2025-12-14 02:23:12,854 [wrapper] ==== wrapper stderr END ====
[2025-12-13 21:23:12]  *** Error codes and diagnostics ***
[2025-12-13 21:23:12]     "exeErrorCode": 0,
[2025-12-13 21:23:12]     "exeErrorDiag": "",
[2025-12-13 21:23:12]     "pilotErrorCode": 0,
[2025-12-13 21:23:12]     "pilotErrorDiag": "",
[2025-12-13 21:23:12]  *** Listing of results directory ***
[2025-12-13 21:23:12] total 445192
[2025-12-13 21:23:12] -rwx------ 1 boincer umatlas     36322 Dec 13 08:48 runpilot2-wrapper.sh
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:50 pilot3.tar.gz
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:53 queuedata.json
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas       100 Dec 13 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 21:23:12] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 16:56 run_atlas
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas       105 Dec 13 16:56 job.xml
[2025-12-13 21:23:12] -rw-r--r-- 2 boincer umatlas 224750866 Dec 13 16:56 EVNT.47898761._000286.pool.root.1
[2025-12-13 21:23:12] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 16:56 start_atlas.sh
[2025-12-13 21:23:12] drwxrwx--x 2 boincer umatlas      4096 Dec 13 16:56 shared
[2025-12-13 21:23:12] -rw-r--r-- 2 boincer umatlas    592399 Dec 13 16:56 input.tar.gz
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas         0 Dec 13 16:56 boinc_lockfile
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 16:56 pandaJob.out
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas        57 Dec 13 16:56 setup.sh.local
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas    991736 Dec 13 16:56 agis_schedconf.cvmfs.json
[2025-12-13 21:23:12] drwx------ 5 boincer umatlas      4096 Dec 13 16:56 pilot3
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 21:21 init_data.xml
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas 221781704 Dec 13 21:21 HITS.47898763._005900.pool.root.1
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas       532 Dec 13 21:22 boinc_task_state.xml
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas      1055 Dec 13 21:22 memory_monitor_summary.json
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas   1516240 Dec 13 21:22 agis_ddmendpoints.agis.ALL.json
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas    499328 Dec 13 21:22 log.47898763._005900.job.log.tgz.1
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas      7855 Dec 13 21:22 heartbeat.json
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas        29 Dec 13 21:22 wrapper_checkpoint.txt
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 21:22 boinc_mmap_file
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas        95 Dec 13 21:23 pilot_heartbeat.json
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas       820 Dec 13 21:23 pilotlog.txt
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas   2216359 Dec 13 21:23 log.47898763._005900.job.log.1
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas       357 Dec 13 21:23 output.list
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas       620 Dec 13 21:23 runtime_log
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas   2734080 Dec 13 21:23 result.tar.gz
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas       662 Dec 13 21:23 XMFNDmYAfo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXpPKDmPolVNn.diag
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas      9338 Dec 13 21:23 runtime_log.err
[2025-12-13 21:23:12] -rw-r--r-- 1 boincer umatlas     21081 Dec 13 21:23 stderr.txt
[2025-12-13 21:23:12] HITS file was successfully produced:
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas 221781704 Dec 13 21:21 shared/HITS.pool.root.1
[2025-12-13 21:23:12]  *** Contents of shared directory: ***
[2025-12-13 21:23:12] total 439340
[2025-12-13 21:23:12] -rw-r--r-- 2 boincer umatlas 224750866 Dec 13 16:56 ATLAS.root_0
[2025-12-13 21:23:12] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 16:56 start_atlas.sh
[2025-12-13 21:23:12] -rw-r--r-- 2 boincer umatlas    592399 Dec 13 16:56 input.tar.gz
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas 221781704 Dec 13 21:21 HITS.pool.root.1
[2025-12-13 21:23:12] -rw------- 1 boincer umatlas   2734080 Dec 13 21:23 result.tar.gz
21:23:14 (19246): run_atlas exited; CPU time 120993.588245
21:23:14 (19246): called boinc_finish(0)

</stderr_txt>
]]>

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