Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:51:44 (6850): wrapper (7.7.26015): starting
05:51:44 (6850): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 05:51:44] Arguments: --nthreads 8
[2025-12-14 05:51:44] Threads: 8
[2025-12-14 05:51:44] Checking for CVMFS
[2025-12-14 05:51:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 05:51:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 05:51:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 05:51:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 05:51:46] 2.11.2.0 29536 113594 126864 153984 2 61 21665326 25165825 4296 130560 12 32854997 99.863 20764927 1963 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 05:51:46] CVMFS is ok
[2025-12-14 05:51:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 05:51:46] Checking for apptainer binary...
[2025-12-14 05:51:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 05:51:46] Running /usr/bin/apptainer --version
[2025-12-14 05:51:47] apptainer version 1.3.2-1.el7
[2025-12-14 05:51:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 05:52:00] cg-vwn448.simple-grid.lan
[2025-12-14 05:52:00] apptainer works
[2025-12-14 05:52:00] Set ATHENA_PROC_NUMBER=8
[2025-12-14 05:52:00] Set ATHENA_CORE_NUMBER=8
[2025-12-14 05:52:00] Starting ATLAS job with PandaID=6929334729
[2025-12-14 05:52:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 12:10:20]  *** The last 200 lines of the pilot log: ***
[2025-12-14 12:10:20] 2025-12-14 11:09:26,946 | INFO     | time since job start (22435s) is within the limit (174528.0s)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,833 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 12:10:20] 2025-12-14 11:09:27,834 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 12:10:20] 2025-12-14 11:09:27,836 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6929334729/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,836 | INFO     | extracted standard info from prmon json
[2025-12-14 12:10:20] 2025-12-14 11:09:27,837 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 12:10:20] 2025-12-14 11:09:27,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 12:10:20] 2025-12-14 11:09:27,837 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 12:10:20] 2025-12-14 11:09:27,837 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 12:10:20] 2025-12-14 11:09:27,846 | INFO     | fitting pss+swap vs Time
[2025-12-14 12:10:20] 2025-12-14 11:09:27,846 | INFO     | sum of square deviations: 14346910860.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,851 | INFO     | sum of deviations: 138499405659.99997
[2025-12-14 12:10:20] 2025-12-14 11:09:27,851 | INFO     | mean x: 1765699534.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,851 | INFO     | mean y: 2468534.3509749305
[2025-12-14 12:10:20] 2025-12-14 11:09:27,852 | INFO     | intersect: -17042896730.652065
[2025-12-14 12:10:20] 2025-12-14 11:09:27,852 | INFO     | chi2: 5.222976530562487
[2025-12-14 12:10:20] 2025-12-14 11:09:27,853 | INFO     | sum of square deviations: 13755764892.5
[2025-12-14 12:10:20] 2025-12-14 11:09:27,857 | INFO     | sum of deviations: 160079253202.50003
[2025-12-14 12:10:20] 2025-12-14 11:09:27,857 | INFO     | mean x: 1765699381.5
[2025-12-14 12:10:20] 2025-12-14 11:09:27,858 | INFO     | mean y: 2474031.7598870057
[2025-12-14 12:10:20] 2025-12-14 11:09:27,858 | INFO     | intersect: -20545408298.26927
[2025-12-14 12:10:20] 2025-12-14 11:09:27,858 | INFO     | chi2: 4.471366828917635
[2025-12-14 12:10:20] 2025-12-14 11:09:27,858 | INFO     | current chi2=4.471366828917635 (change=14.390447616350063 %)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,859 | INFO     | right removable region: 353
[2025-12-14 12:10:20] 2025-12-14 11:09:27,859 | INFO     | sum of square deviations: 13755764892.5
[2025-12-14 12:10:20] 2025-12-14 11:09:27,863 | INFO     | sum of deviations: 21737489964.50001
[2025-12-14 12:10:20] 2025-12-14 11:09:27,864 | INFO     | mean x: 1765699686.5
[2025-12-14 12:10:20] 2025-12-14 11:09:27,864 | INFO     | mean y: 2498626.45480226
[2025-12-14 12:10:20] 2025-12-14 11:09:27,864 | INFO     | intersect: -2787740921.514018
[2025-12-14 12:10:20] 2025-12-14 11:09:27,864 | INFO     | chi2: 1.270493781592401
[2025-12-14 12:10:20] 2025-12-14 11:09:27,865 | INFO     | current chi2=1.270493781592401 (change=75.67490923694471 %)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,865 | INFO     | sum of square deviations: 13181084350.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,869 | INFO     | sum of deviations: -6934640673.999998
[2025-12-14 12:10:20] 2025-12-14 11:09:27,870 | INFO     | mean x: 1765699839.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,870 | INFO     | mean y: 2506187.011461318
[2025-12-14 12:10:20] 2025-12-14 11:09:27,870 | INFO     | intersect: 931450543.6724253
[2025-12-14 12:10:20] 2025-12-14 11:09:27,870 | INFO     | chi2: 0.869261779992824
[2025-12-14 12:10:20] 2025-12-14 11:09:27,871 | INFO     | current chi2=0.869261779992824 (change=31.580792241004445 %)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,871 | INFO     | sum of square deviations: 12622636670.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,876 | INFO     | sum of deviations: -21011340962.5
[2025-12-14 12:10:20] 2025-12-14 11:09:27,876 | INFO     | mean x: 1765699991.5
[2025-12-14 12:10:20] 2025-12-14 11:09:27,876 | INFO     | mean y: 2510030.2005813955
[2025-12-14 12:10:20] 2025-12-14 11:09:27,876 | INFO     | intersect: 2941652265.599317
[2025-12-14 12:10:20] 2025-12-14 11:09:27,877 | INFO     | chi2: 0.7939066470335215
[2025-12-14 12:10:20] 2025-12-14 11:09:27,877 | INFO     | current chi2=0.7939066470335215 (change=8.668865316950262 %)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,877 | INFO     | left removable region: 30
[2025-12-14 12:10:20] 2025-12-14 11:09:27,878 | INFO     | sum of square deviations: 10449170802.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,882 | INFO     | sum of deviations: -2160380026.000001
[2025-12-14 12:10:20] 2025-12-14 11:09:27,882 | INFO     | mean x: 1765700266.0
[2025-12-14 12:10:20] 2025-12-14 11:09:27,882 | INFO     | mean y: 2517526.6996904025
[2025-12-14 12:10:20] 2025-12-14 11:09:27,882 | INFO     | intersect: 367578416.10913205
[2025-12-14 12:10:20] 2025-12-14 11:09:27,883 | INFO     | chi2: 0.00559821277503104
[2025-12-14 12:10:20] 2025-12-14 11:09:27,883 | INFO     | current memory leak: -0.21 B/s (using 323 data points, chi2=0.01)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | ..............................
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . Timing measurements:
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . get job = 0 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . initial setup = 10 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . payload setup = 122 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . stage-in = 0 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . payload execution = 22013 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,884 | INFO     | . stage-out = 5 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,885 | INFO     | . log creation = 1 s
[2025-12-14 12:10:20] 2025-12-14 11:09:27,885 | INFO     | ..............................
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | 
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | job summary report
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | --------------------------------------------------
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | PanDA job id: 6929334729
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | task id: 47898763
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | errors: (none)
[2025-12-14 12:10:20] 2025-12-14 11:09:28,085 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | pilot state: finished 
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | transexitcode: 0
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | exeerrorcode: 0
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | exeerrordiag: 
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | exitcode: 0
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | exitmsg: OK
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | cpuconsumptiontime: 82531 s
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | nevents: 400
[2025-12-14 12:10:20] 2025-12-14 11:09:28,086 | INFO     | neventsw: 0
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | pid: 17228
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | pgrp: 17228
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | corecount: 8
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | event service: False
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | sizes: {0: 2283726, 1: 2283981, 12: 2283981, 23: 2284009, 34: 2284037, 44: 2284065, 55: 2284221, 66: 2284249, 77: 2284277, 87: 2284333, 89: 2284623, 98: 2284931, 2
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | --------------------------------------------------
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | 
[2025-12-14 12:10:20] 2025-12-14 11:09:28,087 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-12-14 12:10:20] 2025-12-14 11:09:28,623 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,623 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,623 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | job 6929334729 has completed (purged errors)
[2025-12-14 12:10:20] 2025-12-14 11:09:28,625 | INFO     | overall cleanup function is called
[2025-12-14 12:10:20] 2025-12-14 11:09:29,635 | INFO     | --- collectZombieJob: --- 10, [17228]
[2025-12-14 12:10:20] 2025-12-14 11:09:29,635 | INFO     | zombie collector waiting for pid 17228
[2025-12-14 12:10:20] 2025-12-14 11:09:29,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 12:10:20] 2025-12-14 11:09:29,635 | INFO     | collected zombie processes
[2025-12-14 12:10:20] 2025-12-14 11:09:29,635 | INFO     | will attempt to kill all subprocesses of pid=17228
[2025-12-14 12:10:20] 2025-12-14 11:09:29,736 | INFO     | process IDs to be killed: [17228] (in reverse order)
[2025-12-14 12:10:20] 2025-12-14 11:09:30,549 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 12:10:20] 2025-12-14 11:09:30,549 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 12:10:20] 2025-12-14 11:09:30,552 | INFO     | did not find any defunct processes belonging to 17228
[2025-12-14 12:10:20] 2025-12-14 11:09:30,561 | INFO     | did not find any defunct processes belonging to 17228
[2025-12-14 12:10:20] 2025-12-14 11:09:30,561 | INFO     | ready for new job
[2025-12-14 12:10:20] 2025-12-14 11:09:30,561 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 12:10:20] 2025-12-14 11:09:30,564 | INFO     | ***************************************
[2025-12-14 12:10:20] 2025-12-14 11:09:30,564 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 12:10:20] 2025-12-14 11:09:30,564 | INFO     | ***************************************
[2025-12-14 12:10:20] 2025-12-14 11:09:30,564 | INFO     | 
[2025-12-14 12:10:20] 2025-12-14 11:09:30,565 | INFO     | pilot is running in a VM
[2025-12-14 12:10:20] 2025-12-14 11:09:30,565 | INFO     | architecture information:
[2025-12-14 12:10:20] 2025-12-14 11:09:30,571 | INFO     | executing command: cat /etc/os-release
[2025-12-14 12:10:20] 2025-12-14 11:09:30,785 | INFO     | cat /etc/os-release:
[2025-12-14 12:10:20] NAME="CentOS Linux"
[2025-12-14 12:10:20] VERSION="7 (Core)"
[2025-12-14 12:10:20] ID="centos"
[2025-12-14 12:10:20] ID_LIKE="rhel fedora"
[2025-12-14 12:10:20] VERSION_ID="7"
[2025-12-14 12:10:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 12:10:20] ANSI_COLOR="0;31"
[2025-12-14 12:10:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 12:10:20] HOME_URL="https://www.centos.org/"
[2025-12-14 12:10:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 12:10:20] 
[2025-12-14 12:10:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 12:10:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 12:10:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 12:10:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 12:10:20] 
[2025-12-14 12:10:20] 2025-12-14 11:09:30,785 | INFO     | ***************************************
[2025-12-14 12:10:20] 2025-12-14 11:09:31,289 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-12-14 12:10:20] 2025-12-14 11:09:31,514 | INFO     | sufficient remaining disk space (497297653760 B)
[2025-12-14 12:10:20] 2025-12-14 11:09:31,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 12:10:20] 2025-12-14 11:09:31,515 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 12:10:20] 2025-12-14 11:09:31,515 | INFO     | update_server=False
[2025-12-14 12:10:20] 2025-12-14 11:09:31,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 12:10:20] 2025-12-14 11:09:31,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:10:20] 2025-12-14 11:09:31,737 | INFO     | aborting loop
[2025-12-14 12:10:20] 2025-12-14 11:09:32,115 | INFO     | all data control threads have been joined
[2025-12-14 12:10:20] 2025-12-14 11:09:32,306 | INFO     | all payload control threads have been joined
[2025-12-14 12:10:20] 2025-12-14 11:09:32,521 | INFO     | [job] retrieve thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:32,744 | INFO     | [job] job monitor thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:32,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 12:10:20] 2025-12-14 11:09:32,996 | INFO     | all job control threads have been joined
[2025-12-14 12:10:20] 2025-12-14 11:09:33,003 | INFO     | [payload] validate_post thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,073 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,105 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 12:10:20] 2025-12-14 11:09:33,121 | INFO     | [data] control thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,195 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,312 | INFO     | [payload] control thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,437 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,468 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,492 | INFO     | [data] copytool_in thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:33,886 | INFO     | [job] validate thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:34,002 | INFO     | [job] control thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:34,018 | INFO     | [payload] failed_post thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:34,111 | INFO     | [job] queue monitor thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:34,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 12:10:20] 2025-12-14 11:09:34,902 | INFO     | [data] copytool_out thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:09:38,452 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 12:10:20] 2025-12-14 11:10:00,146 | INFO     | PID=10651 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 12:10:20] 2025-12-14 11:10:00,146 | INFO     | .. there are 9 such processes running
[2025-12-14 12:10:20] 2025-12-14 11:10:00,146 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 12:10:20] 2025-12-14 11:10:00,147 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 12:10:20] 2025-12-14 11:10:00,147 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 12:10:20] 2025-12-14 11:10:09,458 | INFO     | [monitor] cgroup control has ended
[2025-12-14 12:10:20] 2025-12-14 11:10:10,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140307700811584)>', '<ExcThread(monitor, started 140307052099328)>']
[2025-12-14 12:10:20] 2025-12-14 11:10:11,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 12:10:20] 2025-12-14 11:10:11,213 | INFO     | [monitor] control thread has ended
[2025-12-14 12:10:20] 2025-12-14 11:10:15,561 | INFO     | all workflow threads have been joined
[2025-12-14 12:10:20] 2025-12-14 11:10:15,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 12:10:20] 2025-12-14 11:10:15,561 | INFO     | traces error code: 0
[2025-12-14 12:10:20] 2025-12-14 11:10:15,561 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 12:10:20] 2025-12-14 11:10:15,890 [wrapper] ==== pilot stdout END ====
[2025-12-14 12:10:20] 2025-12-14 11:10:16,021 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 12:10:20] 2025-12-14 11:10:16,107 [wrapper] pilotpid: 10651
[2025-12-14 12:10:20] 2025-12-14 11:10:16,153 [wrapper] Pilot exit status: 0
[2025-12-14 12:10:20] 2025-12-14 11:10:16,589 [wrapper] pandaids: 6929334729
[2025-12-14 12:10:20] 2025-12-14 11:10:17,283 [wrapper] cleanup supervisor_pilot  4149 10652
[2025-12-14 12:10:20] 2025-12-14 11:10:17,379 [wrapper] Test setup, not cleaning
[2025-12-14 12:10:20] 2025-12-14 11:10:17,490 [wrapper] apfmon messages muted
[2025-12-14 12:10:20] 2025-12-14 11:10:17,583 [wrapper] ==== wrapper stdout END ====
[2025-12-14 12:10:20] 2025-12-14 11:10:17,675 [wrapper] ==== wrapper stderr END ====
[2025-12-14 12:10:20]  *** Error codes and diagnostics ***
[2025-12-14 12:10:20]     "exeErrorCode": 0,
[2025-12-14 12:10:20]     "exeErrorDiag": "",
[2025-12-14 12:10:20]     "pilotErrorCode": 0,
[2025-12-14 12:10:20]     "pilotErrorDiag": "",
[2025-12-14 12:10:20]  *** Listing of results directory ***
[2025-12-14 12:10:20] total 450200
[2025-12-14 12:10:20] -rwx------. 1 boinc boinc     36322 Dec 13 14:48 runpilot2-wrapper.sh
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc    579449 Dec 13 14:50 pilot3.tar.gz
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc      5112 Dec 13 14:53 queuedata.json
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc       100 Dec 14 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 12:10:20] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 05:51 run_atlas
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc       105 Dec 14 05:51 job.xml
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc      6393 Dec 14 05:51 init_data.xml
[2025-12-14 12:10:20] -rw-r--r--. 2 boinc boinc 224750866 Dec 14 05:51 EVNT.47898761._000286.pool.root.1
[2025-12-14 12:10:20] -rw-r--r--. 2 boinc boinc     15847 Dec 14 05:51 start_atlas.sh
[2025-12-14 12:10:20] drwxrwx--x. 2 boinc boinc        68 Dec 14 05:51 shared
[2025-12-14 12:10:20] -rw-r--r--. 2 boinc boinc    592398 Dec 14 05:51 input.tar.gz
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc         0 Dec 14 05:51 boinc_lockfile
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc      2504 Dec 14 05:52 pandaJob.out
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc    991728 Dec 14 05:55 agis_schedconf.cvmfs.json
[2025-12-14 12:10:20] drwx------. 5 boinc boinc      4096 Dec 14 05:55 pilot3
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc 225244682 Dec 14 12:06 HITS.47898763._005888.pool.root.1
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc       531 Dec 14 12:07 boinc_task_state.xml
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc      1019 Dec 14 12:07 memory_monitor_summary.json
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc   1516240 Dec 14 12:07 agis_ddmendpoints.agis.ALL.json
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc    562693 Dec 14 12:07 log.47898763._005888.job.log.tgz.1
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc        95 Dec 14 12:09 pilot_heartbeat.json
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc      7776 Dec 14 12:09 heartbeat.json
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc      8192 Dec 14 12:10 boinc_mmap_file
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc        28 Dec 14 12:10 wrapper_checkpoint.txt
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc      4885 Dec 14 12:10 pilotlog.txt
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc   2987354 Dec 14 12:10 log.47898763._005888.job.log.1
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc       357 Dec 14 12:10 output.list
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc       620 Dec 14 12:10 runtime_log
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc   3573760 Dec 14 12:10 result.tar.gz
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc      8833 Dec 14 12:10 runtime_log.err
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc       658 Dec 14 12:10 fPvMDmYAfo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLpPKDmIygX9n.diag
[2025-12-14 12:10:20] -rw-r--r--. 1 boinc boinc     20787 Dec 14 12:10 stderr.txt
[2025-12-14 12:10:20] HITS file was successfully produced:
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc 225244682 Dec 14 12:06 shared/HITS.pool.root.1
[2025-12-14 12:10:20]  *** Contents of shared directory: ***
[2025-12-14 12:10:20] total 443540
[2025-12-14 12:10:20] -rw-r--r--. 2 boinc boinc 224750866 Dec 14 05:51 ATLAS.root_0
[2025-12-14 12:10:20] -rw-r--r--. 2 boinc boinc     15847 Dec 14 05:51 start_atlas.sh
[2025-12-14 12:10:20] -rw-r--r--. 2 boinc boinc    592398 Dec 14 05:51 input.tar.gz
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc 225244682 Dec 14 12:06 HITS.pool.root.1
[2025-12-14 12:10:20] -rw-------. 1 boinc boinc   3573760 Dec 14 12:10 result.tar.gz
12:10:21 (6850): run_atlas exited; CPU time 82847.609726
12:10:21 (6850): called boinc_finish(0)

</stderr_txt>
]]>

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